Wall clock time and date at job start Tue Mar 31 2020 19:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.50706 * 109.46853 * 120.00029 * 2 1 3 5 5 N 1.34661 * 125.80064 * 300.02241 * 4 2 1 6 6 H 0.97002 * 124.85257 * 359.95731 * 5 4 2 7 7 C 1.36444 * 110.29735 * 179.97438 * 5 4 2 8 8 C 1.34496 * 108.85660 * 359.70637 * 7 5 4 9 9 C 1.36766 * 125.80035 * 120.00272 * 4 2 1 10 10 C 1.47261 * 126.94566 * 0.02562 * 9 4 2 11 11 O 1.21631 * 119.99774 * 322.19257 * 10 9 4 12 12 N 1.34773 * 120.00275 * 142.19598 * 10 9 4 13 13 C 1.47154 * 120.98231 * 354.39941 * 12 10 9 14 14 C 1.53299 * 108.38261 * 230.55534 * 13 12 10 15 15 O 1.42959 * 109.22477 * 307.69762 * 14 13 12 16 16 C 1.42963 * 114.16506 * 62.58254 * 15 14 13 17 17 H 1.08998 * 109.55437 * 57.36713 * 16 15 14 18 18 C 1.53000 * 109.51217 * 177.49513 * 16 15 14 19 19 H 1.08994 * 109.47037 * 184.74317 * 18 16 15 20 20 C 1.53004 * 109.47048 * 304.74818 * 18 16 15 21 21 N 1.46503 * 109.47043 * 64.74565 * 18 16 15 22 22 C 1.36933 * 119.99940 * 155.00341 * 21 18 16 23 23 H 1.08002 * 120.00519 * 359.97438 * 22 21 18 24 24 C 1.38817 * 119.99828 * 180.27377 * 22 21 18 25 25 N 1.31618 * 120.00397 * 359.72354 * 24 22 21 26 26 Si 1.86809 * 119.99834 * 179.72344 * 24 22 21 27 27 H 1.48502 * 109.47076 * 359.97438 * 26 24 22 28 28 H 1.48490 * 109.46922 * 120.00251 * 26 24 22 29 29 H 1.48501 * 109.46850 * 240.00263 * 26 24 22 30 30 C 1.47150 * 120.98148 * 174.41968 * 12 10 9 31 31 H 1.09008 * 109.46974 * 300.00010 * 1 2 3 32 32 H 1.08992 * 109.47093 * 60.00049 * 1 2 3 33 33 H 1.08998 * 109.46937 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47585 * 239.99557 * 2 1 3 35 35 H 1.08992 * 109.47070 * 299.99965 * 3 2 1 36 36 H 1.08994 * 109.47135 * 59.99858 * 3 2 1 37 37 H 1.09004 * 109.46732 * 179.97438 * 3 2 1 38 38 H 1.08005 * 125.57442 * 179.97438 * 7 5 4 39 39 H 1.07997 * 126.83118 * 180.26598 * 8 7 5 40 40 H 1.09003 * 109.68154 * 350.28083 * 13 12 10 41 41 H 1.09002 * 109.68094 * 110.83147 * 13 12 10 42 42 H 1.09007 * 109.50898 * 67.62429 * 14 13 12 43 43 H 1.08999 * 109.50587 * 187.77379 * 14 13 12 44 44 H 1.08997 * 109.46518 * 299.99636 * 20 18 16 45 45 H 1.08998 * 109.47144 * 59.99824 * 20 18 16 46 46 H 1.08996 * 109.46989 * 180.02562 * 20 18 16 47 47 H 0.97000 * 119.99753 * 334.99690 * 21 18 16 48 48 H 0.96994 * 120.00524 * 180.02562 * 25 24 22 49 49 H 1.09005 * 109.68438 * 9.72455 * 30 12 10 50 50 H 1.09000 * 109.71774 * 249.18444 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7796 -0.3539 2.5043 6 1 1.2413 0.4079 2.7703 7 6 2.3894 -1.2171 3.3672 8 6 3.0434 -2.1530 2.6563 9 6 2.8219 -1.8271 1.2433 10 6 3.3398 -2.5584 0.0748 11 8 2.6453 -2.6939 -0.9146 12 7 4.5832 -3.0777 0.1015 13 6 5.4859 -2.8238 1.2356 14 6 6.8302 -2.3358 0.6835 15 8 7.2960 -3.2579 -0.3046 16 6 6.4425 -3.3737 -1.4456 17 1 6.3136 -2.3940 -1.9056 18 6 7.0695 -4.3349 -2.4574 19 1 6.4614 -4.3580 -3.3617 20 6 8.4820 -3.8599 -2.8046 21 7 7.1349 -5.6790 -1.8784 22 6 7.1613 -6.7765 -2.6969 23 1 7.1334 -6.6513 -3.7693 24 6 7.2175 -8.0504 -2.1481 25 7 7.2510 -8.2032 -0.8413 26 14 7.2456 -9.5479 -3.2645 27 1 7.1992 -9.1092 -4.6825 28 1 8.4911 -10.3202 -3.0253 29 1 6.0682 -10.4047 -2.9732 30 6 5.0783 -3.9149 -1.0026 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 3.1301 1.4424 0.0005 38 1 2.3496 -1.1609 4.4451 39 1 3.6195 -2.9782 3.0479 40 1 5.0558 -2.0598 1.8832 41 1 5.6334 -3.7442 1.8006 42 1 6.7027 -1.3518 0.2320 43 1 7.5558 -2.2738 1.4946 44 1 8.4332 -2.8598 -3.2353 45 1 9.0900 -3.8368 -1.9002 46 1 8.9285 -4.5444 -3.5257 47 1 7.1596 -5.7915 -0.9153 48 1 7.2906 -9.0932 -0.4578 49 1 4.3784 -3.8734 -1.8373 50 1 5.1847 -4.9454 -0.6637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282912987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:21 Heat of formation + Delta-G solvation = -23.369505 kcal Electronic energy + Delta-G solvation = -30334.935076 eV Core-core repulsion = 26363.301059 eV Total energy + Delta-G solvation = -3971.634017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56841 -39.73096 -37.94387 -35.59057 -35.27380 -34.25703 -32.24495 -31.31494 -29.93739 -28.80999 -28.29784 -27.47356 -27.41064 -24.30749 -23.41036 -23.19174 -22.17389 -21.08695 -20.59512 -19.55311 -18.39204 -17.70754 -17.22010 -16.28426 -16.10519 -15.49934 -15.37843 -14.86725 -14.64855 -14.55931 -14.36827 -14.34815 -14.07113 -13.65182 -13.34936 -13.18272 -13.17411 -12.99376 -12.92930 -12.53460 -12.46247 -12.25240 -11.82265 -11.63242 -11.47122 -11.35683 -11.23363 -11.13271 -11.06923 -10.78885 -10.70853 -10.35565 -10.17510 -9.90031 -9.75615 -9.56151 -9.49073 -8.88142 -8.85630 -8.38252 -8.11167 -6.85329 -5.67615 -2.95602 1.79547 2.31008 2.91255 3.27269 3.46105 3.49586 3.55310 3.57259 4.13077 4.37679 4.59720 4.66696 4.77434 4.86093 4.96952 5.02741 5.14833 5.24239 5.25888 5.30186 5.32844 5.45843 5.48263 5.52358 5.56546 5.61467 5.68620 5.71528 5.74228 5.83309 5.85917 5.96065 5.96842 5.99838 6.05955 6.17201 6.31569 6.49182 6.55320 6.59952 6.73171 6.77049 6.84282 6.88650 7.22570 7.25550 7.60376 7.69462 7.79235 8.47501 8.50676 9.62899 10.20329 10.57468 11.54834 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.002907 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.922124 B = 9629.122233 C = 9783.996724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.146 4.146 4 C 0.103 3.897 5 N -0.551 5.551 6 H 0.413 0.587 7 C -0.017 4.017 8 C -0.167 4.167 9 C -0.222 4.222 10 C 0.591 3.409 11 O -0.549 6.549 12 N -0.606 5.606 13 C 0.070 3.930 14 C 0.048 3.952 15 O -0.361 6.361 16 C 0.079 3.921 17 H 0.053 0.947 18 C 0.182 3.818 19 H 0.059 0.941 20 C -0.159 4.159 21 N -0.718 5.718 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 C 0.087 3.913 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.100 0.900 44 H 0.032 0.968 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.389 0.611 48 H 0.253 0.747 49 H 0.095 0.905 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 22.251 9.441 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.203 4.203 4 C -0.014 4.014 5 N -0.146 5.146 6 H 0.249 0.751 7 C -0.145 4.145 8 C -0.191 4.191 9 C -0.232 4.232 10 C 0.380 3.620 11 O -0.428 6.428 12 N -0.338 5.338 13 C -0.054 4.054 14 C -0.030 4.030 15 O -0.279 6.279 16 C 0.020 3.980 17 H 0.071 0.929 18 C 0.072 3.928 19 H 0.077 0.923 20 C -0.219 4.219 21 N -0.360 5.360 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 C -0.035 4.035 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.186 0.814 39 H 0.165 0.835 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.224 0.776 48 H 0.063 0.937 49 H 0.113 0.887 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.513 22.022 8.858 25.960 hybrid contribution -0.310 -0.545 0.181 0.652 sum -10.823 21.477 9.039 25.692 Atomic orbital electron populations 1.21801 0.93976 1.02636 1.01555 1.19996 0.96109 0.95409 0.94574 1.21867 1.01636 0.94989 1.01842 1.20105 0.99089 0.96708 0.85505 1.41452 1.42193 1.25676 1.05295 0.75109 1.21711 1.02685 0.94363 0.95725 1.22106 1.04757 1.01197 0.91076 1.20138 1.08752 1.00868 0.93403 1.17434 0.80684 0.77864 0.85993 1.90743 1.57598 1.60133 1.34345 1.48002 1.13333 1.50910 1.21598 1.22636 0.90835 1.02535 0.89358 1.22894 0.95130 0.92388 0.92589 1.88087 1.47238 1.62694 1.29897 1.22889 0.89520 0.98423 0.87212 0.92893 1.20262 0.94275 0.85447 0.92858 0.92292 1.22321 0.99850 0.98372 1.01360 1.42418 1.88165 0.98816 1.06614 1.19290 1.42247 0.85116 0.90079 0.91171 1.24712 1.03187 0.97338 0.95657 1.69678 1.57752 1.21475 1.08981 0.86161 0.77063 0.83530 0.79716 1.20603 1.22029 1.22002 1.22414 0.95383 0.95501 0.90206 0.93403 0.91746 0.91805 0.87273 0.91668 0.93208 0.92212 0.81403 0.83494 0.88283 0.90523 0.93552 0.88209 0.94932 0.92484 0.92889 0.77588 0.93698 0.88652 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.04 -0.41 3.22 -91.77 -0.30 -0.71 16 3 C -0.15 -1.10 9.18 37.16 0.34 -0.76 16 4 C 0.10 1.12 5.68 -81.88 -0.46 0.65 16 5 N -0.55 -4.26 5.90 -9.10 -0.05 -4.31 16 6 H 0.41 1.93 8.96 -40.82 -0.37 1.56 16 7 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 8 C -0.17 -1.80 8.71 -37.49 -0.33 -2.13 16 9 C -0.22 -2.97 5.35 -103.35 -0.55 -3.52 16 10 C 0.59 9.92 7.39 -12.59 -0.09 9.83 16 11 O -0.55 -10.83 15.02 5.25 0.08 -10.75 16 12 N -0.61 -9.88 3.02 -173.59 -0.52 -10.40 16 13 C 0.07 0.93 5.62 -3.53 -0.02 0.91 16 14 C 0.05 0.64 6.98 37.31 0.26 0.90 16 15 O -0.36 -6.39 9.24 -35.23 -0.33 -6.72 16 16 C 0.08 1.42 2.57 -26.58 -0.07 1.35 16 17 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.18 3.75 2.80 -67.93 -0.19 3.56 16 19 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 20 C -0.16 -3.04 9.30 37.16 0.35 -2.69 16 21 N -0.72 -18.12 4.24 -53.42 -0.23 -18.35 16 22 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 26 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 C 0.09 1.63 5.84 -3.53 -0.02 1.61 16 31 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.41 6.37 -51.93 -0.33 1.08 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.15 1.49 7.40 -52.49 -0.39 1.10 16 40 H 0.10 1.10 4.94 -51.93 -0.26 0.84 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.39 10.59 7.08 -40.82 -0.29 10.30 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 49 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 50 H 0.10 2.13 6.94 -51.93 -0.36 1.77 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -34.10 396.79 -8.77 -42.87 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.21 Total: 10.96 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.19 Total: 0.60 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.08 Total: -60.70 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.25 Total: -17.47 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.10 -8.77 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.505 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds