Wall clock time and date at job start Tue Mar 31 2020 19:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.50706 * 109.46853 * 120.00029 * 2 1 3 5 5 N 1.34661 * 125.80064 * 300.02241 * 4 2 1 6 6 H 0.97002 * 124.85257 * 359.95731 * 5 4 2 7 7 C 1.36444 * 110.29735 * 179.97438 * 5 4 2 8 8 C 1.34496 * 108.85660 * 359.70637 * 7 5 4 9 9 C 1.36766 * 125.80035 * 120.00272 * 4 2 1 10 10 C 1.47261 * 126.94566 * 0.02562 * 9 4 2 11 11 O 1.21631 * 119.99774 * 322.19257 * 10 9 4 12 12 N 1.34773 * 120.00275 * 142.19598 * 10 9 4 13 13 C 1.47154 * 120.98231 * 354.39941 * 12 10 9 14 14 C 1.53299 * 108.38261 * 230.55534 * 13 12 10 15 15 O 1.42959 * 109.22477 * 307.69762 * 14 13 12 16 16 C 1.42963 * 114.16506 * 62.58254 * 15 14 13 17 17 H 1.08998 * 109.55437 * 57.36713 * 16 15 14 18 18 C 1.53000 * 109.51217 * 177.49513 * 16 15 14 19 19 H 1.08994 * 109.47037 * 184.74317 * 18 16 15 20 20 C 1.53004 * 109.47048 * 304.74818 * 18 16 15 21 21 N 1.46503 * 109.47043 * 64.74565 * 18 16 15 22 22 C 1.36933 * 119.99940 * 155.00341 * 21 18 16 23 23 H 1.08002 * 120.00519 * 359.97438 * 22 21 18 24 24 C 1.38817 * 119.99828 * 180.27377 * 22 21 18 25 25 N 1.31618 * 120.00397 * 359.72354 * 24 22 21 26 26 Si 1.86809 * 119.99834 * 179.72344 * 24 22 21 27 27 H 1.48502 * 109.47076 * 359.97438 * 26 24 22 28 28 H 1.48490 * 109.46922 * 120.00251 * 26 24 22 29 29 H 1.48501 * 109.46850 * 240.00263 * 26 24 22 30 30 C 1.47150 * 120.98148 * 174.41968 * 12 10 9 31 31 H 1.09008 * 109.46974 * 300.00010 * 1 2 3 32 32 H 1.08992 * 109.47093 * 60.00049 * 1 2 3 33 33 H 1.08998 * 109.46937 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47585 * 239.99557 * 2 1 3 35 35 H 1.08992 * 109.47070 * 299.99965 * 3 2 1 36 36 H 1.08994 * 109.47135 * 59.99858 * 3 2 1 37 37 H 1.09004 * 109.46732 * 179.97438 * 3 2 1 38 38 H 1.08005 * 125.57442 * 179.97438 * 7 5 4 39 39 H 1.07997 * 126.83118 * 180.26598 * 8 7 5 40 40 H 1.09003 * 109.68154 * 350.28083 * 13 12 10 41 41 H 1.09002 * 109.68094 * 110.83147 * 13 12 10 42 42 H 1.09007 * 109.50898 * 67.62429 * 14 13 12 43 43 H 1.08999 * 109.50587 * 187.77379 * 14 13 12 44 44 H 1.08997 * 109.46518 * 299.99636 * 20 18 16 45 45 H 1.08998 * 109.47144 * 59.99824 * 20 18 16 46 46 H 1.08996 * 109.46989 * 180.02562 * 20 18 16 47 47 H 0.97000 * 119.99753 * 334.99690 * 21 18 16 48 48 H 0.96994 * 120.00524 * 180.02562 * 25 24 22 49 49 H 1.09005 * 109.68438 * 9.72455 * 30 12 10 50 50 H 1.09000 * 109.71774 * 249.18444 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7796 -0.3539 2.5043 6 1 1.2413 0.4079 2.7703 7 6 2.3894 -1.2171 3.3672 8 6 3.0434 -2.1530 2.6563 9 6 2.8219 -1.8271 1.2433 10 6 3.3398 -2.5584 0.0748 11 8 2.6453 -2.6939 -0.9146 12 7 4.5832 -3.0777 0.1015 13 6 5.4859 -2.8238 1.2356 14 6 6.8302 -2.3358 0.6835 15 8 7.2960 -3.2579 -0.3046 16 6 6.4425 -3.3737 -1.4456 17 1 6.3136 -2.3940 -1.9056 18 6 7.0695 -4.3349 -2.4574 19 1 6.4614 -4.3580 -3.3617 20 6 8.4820 -3.8599 -2.8046 21 7 7.1349 -5.6790 -1.8784 22 6 7.1613 -6.7765 -2.6969 23 1 7.1334 -6.6513 -3.7693 24 6 7.2175 -8.0504 -2.1481 25 7 7.2510 -8.2032 -0.8413 26 14 7.2456 -9.5479 -3.2645 27 1 7.1992 -9.1092 -4.6825 28 1 8.4911 -10.3202 -3.0253 29 1 6.0682 -10.4047 -2.9732 30 6 5.0783 -3.9149 -1.0026 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 3.1301 1.4424 0.0005 38 1 2.3496 -1.1609 4.4451 39 1 3.6195 -2.9782 3.0479 40 1 5.0558 -2.0598 1.8832 41 1 5.6334 -3.7442 1.8006 42 1 6.7027 -1.3518 0.2320 43 1 7.5558 -2.2738 1.4946 44 1 8.4332 -2.8598 -3.2353 45 1 9.0900 -3.8368 -1.9002 46 1 8.9285 -4.5444 -3.5257 47 1 7.1596 -5.7915 -0.9153 48 1 7.2906 -9.0932 -0.4578 49 1 4.3784 -3.8734 -1.8373 50 1 5.1847 -4.9454 -0.6637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282912987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:21 Heat of formation + Delta-G solvation = -46.385875 kcal Electronic energy + Delta-G solvation = -30335.933141 eV Core-core repulsion = 26363.301059 eV Total energy + Delta-G solvation = -3972.632082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40310 -41.01325 -39.30907 -37.09565 -36.24010 -35.58801 -34.16246 -32.37331 -31.35780 -30.10056 -29.62974 -28.66797 -28.08697 -25.97971 -25.14167 -24.34238 -23.02440 -22.23333 -21.40911 -21.12683 -19.62169 -19.21352 -18.48810 -17.61398 -17.35074 -16.88998 -16.65720 -16.24501 -15.97324 -15.84332 -15.41287 -15.25541 -15.13780 -15.04125 -14.93758 -14.54831 -14.17387 -14.11693 -13.88803 -13.79598 -13.46093 -13.40416 -13.09157 -13.05604 -12.87707 -12.78242 -12.52259 -12.47353 -12.16073 -12.12225 -12.08790 -11.86345 -11.77832 -11.67116 -11.45509 -11.06315 -10.94554 -10.86136 -9.76834 -9.49211 -9.11658 -8.93679 -7.88862 -5.16222 0.82791 1.48058 1.48903 1.54567 1.58558 1.87844 2.28566 2.41473 2.58706 2.82383 3.45177 3.63654 3.69396 3.78628 3.93503 3.95610 4.01767 4.13538 4.17808 4.21377 4.28904 4.34715 4.41934 4.46497 4.54362 4.57233 4.64018 4.69408 4.78179 4.82377 4.83870 4.87155 4.87794 4.99038 5.03836 5.07697 5.11469 5.15662 5.23171 5.30783 5.34547 5.42666 5.55126 5.62650 5.77993 6.01288 6.27354 6.33501 6.44579 6.69140 7.19458 7.39573 8.14906 8.40715 9.34705 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.002907 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.922124 B = 9629.122233 C = 9783.996724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.139 4.139 4 C 0.108 3.892 5 N -0.533 5.533 6 H 0.432 0.568 7 C 0.012 3.988 8 C -0.193 4.193 9 C -0.261 4.261 10 C 0.583 3.417 11 O -0.592 6.592 12 N -0.608 5.608 13 C 0.073 3.927 14 C 0.044 3.956 15 O -0.382 6.382 16 C 0.095 3.905 17 H 0.073 0.927 18 C 0.173 3.827 19 H 0.058 0.942 20 C -0.146 4.146 21 N -0.727 5.727 22 C -0.234 4.234 23 H 0.075 0.925 24 C -0.076 4.076 25 N -0.967 5.967 26 Si 0.968 3.032 27 H -0.266 1.266 28 H -0.294 1.294 29 H -0.297 1.297 30 C 0.097 3.903 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.212 0.788 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.129 0.871 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.039 0.961 47 H 0.377 0.623 48 H 0.248 0.752 49 H 0.076 0.924 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 25.287 10.970 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.011 4.011 5 N -0.129 5.129 6 H 0.272 0.728 7 C -0.116 4.116 8 C -0.217 4.217 9 C -0.271 4.271 10 C 0.375 3.625 11 O -0.475 6.475 12 N -0.340 5.340 13 C -0.050 4.050 14 C -0.033 4.033 15 O -0.301 6.301 16 C 0.035 3.965 17 H 0.091 0.909 18 C 0.064 3.936 19 H 0.076 0.924 20 C -0.206 4.206 21 N -0.368 5.368 22 C -0.366 4.366 23 H 0.093 0.907 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.798 3.202 27 H -0.191 1.191 28 H -0.222 1.222 29 H -0.225 1.225 30 C -0.026 4.026 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.228 0.772 39 H 0.165 0.835 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.147 0.853 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.209 0.791 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.055 25.126 10.389 29.351 hybrid contribution -0.210 -1.369 -0.247 1.407 sum -11.265 23.757 10.142 28.181 Atomic orbital electron populations 1.21774 0.92719 1.01626 1.03412 1.19960 0.97110 0.96480 0.92795 1.21822 1.00961 0.93315 1.03531 1.20135 0.98001 0.95977 0.86953 1.41439 1.41497 1.25947 1.04008 0.72789 1.22278 0.99806 0.92287 0.97244 1.22196 1.06774 1.02731 0.89996 1.20041 1.11328 1.02506 0.93263 1.18088 0.80235 0.77514 0.86626 1.90701 1.58586 1.61847 1.36319 1.48070 1.13923 1.50324 1.21639 1.22793 0.90539 1.03021 0.88602 1.23202 0.95635 0.92018 0.92427 1.88046 1.47448 1.64182 1.30441 1.22576 0.88394 0.98243 0.87239 0.90913 1.20499 0.95510 0.84058 0.93498 0.92420 1.22134 0.97941 0.99863 1.00644 1.42526 1.88210 1.00210 1.05821 1.19662 1.40229 0.86076 0.90608 0.90662 1.25486 1.04212 1.00125 0.96968 1.69836 1.59806 1.21557 1.10658 0.85141 0.76437 0.79947 0.78679 1.19072 1.22159 1.22480 1.22017 0.95897 0.94202 0.90523 0.90660 0.90797 0.94206 0.91158 0.90854 0.90658 0.93207 0.77183 0.83483 0.85540 0.91387 0.92037 0.85316 0.91505 0.93471 0.94216 0.79060 0.94280 0.90533 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 2 C -0.04 -0.84 3.22 -11.54 -0.04 -0.88 16 3 C -0.14 -1.78 9.18 71.98 0.66 -1.12 16 4 C 0.11 2.19 5.68 41.78 0.24 2.43 16 5 N -0.53 -6.30 5.90 -182.71 -1.08 -7.37 16 6 H 0.43 1.95 8.96 -92.71 -0.83 1.12 16 7 C 0.01 0.14 11.89 83.12 0.99 1.13 16 8 C -0.19 -3.84 8.71 23.62 0.21 -3.64 16 9 C -0.26 -6.94 5.35 -19.04 -0.10 -7.04 16 10 C 0.58 20.55 7.39 86.62 0.64 21.19 16 11 O -0.59 -25.09 15.02 -4.13 -0.06 -25.15 16 12 N -0.61 -20.65 3.02 -821.37 -2.48 -23.13 16 13 C 0.07 1.91 5.62 86.35 0.49 2.39 16 14 C 0.04 1.12 6.98 72.08 0.50 1.62 16 15 O -0.38 -13.46 9.24 -148.98 -1.38 -14.84 16 16 C 0.09 3.46 2.57 30.70 0.08 3.54 16 17 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 18 C 0.17 7.25 2.80 44.99 0.13 7.37 16 19 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 20 C -0.15 -5.49 9.30 71.98 0.67 -4.82 16 21 N -0.73 -37.97 4.24 -322.93 -1.37 -39.34 16 22 C -0.23 -13.34 9.93 84.04 0.83 -12.51 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 24 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 25 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 26 Si 0.97 47.85 29.55 68.60 2.03 49.88 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 30 C 0.10 3.88 5.84 86.36 0.50 4.39 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.92 6.37 -2.39 -0.02 1.91 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.15 2.83 7.40 -2.91 -0.02 2.81 16 40 H 0.13 2.64 4.94 -2.39 -0.01 2.63 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 1.86 7.57 -2.39 -0.02 1.84 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.38 21.45 7.08 -92.71 -0.66 20.80 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.08 3.29 7.06 -2.38 -0.02 3.27 16 50 H 0.06 2.76 6.94 -2.39 -0.02 2.75 16 Total: -1.00 -78.95 396.79 2.33 -76.63 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.54 Total: 35.46 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.92 Total: 8.57 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -4.65 Total: -130.55 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.44 Total: -39.99 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -78.95 2.33 -76.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.240 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds