Wall clock time and date at job start Tue Mar 31 2020 19:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47571 * 2 1 4 4 O 1.42901 * 109.46823 * 119.99797 * 2 1 3 5 5 C 1.35685 * 116.99899 * 150.00016 * 4 2 1 6 6 C 1.38892 * 119.62339 * 180.02562 * 5 4 2 7 7 C 1.39577 * 118.94708 * 179.97438 * 6 5 4 8 8 C 1.48153 * 120.89201 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00191 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00235 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46997 * 35.00167 * 11 10 8 13 13 C 1.52995 * 109.47289 * 274.99969 * 11 10 8 14 14 C 1.53001 * 109.47177 * 154.99444 * 11 10 8 15 15 C 1.52995 * 109.47588 * 295.00575 * 14 11 10 16 16 C 1.52998 * 109.47258 * 179.97438 * 15 14 11 17 17 N 1.46505 * 109.46718 * 179.97438 * 16 15 14 18 18 C 1.36940 * 119.99306 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00268 * 359.97438 * 18 17 16 20 20 C 1.38821 * 119.99653 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99601 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00058 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46840 * 59.99742 * 22 20 18 24 24 H 1.48500 * 109.47312 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46950 * 299.99756 * 22 20 18 26 26 C 1.39969 * 118.21593 * 0.02562 * 7 6 5 27 27 C 1.37976 * 119.13210 * 359.97438 * 26 7 6 28 28 N 1.31902 * 120.98222 * 359.73074 * 27 26 7 29 29 H 1.09007 * 109.47226 * 300.00655 * 1 2 3 30 30 H 1.09008 * 109.47099 * 59.99927 * 1 2 3 31 31 H 1.08992 * 109.47624 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47195 * 239.99884 * 2 1 3 33 33 H 1.09003 * 109.46440 * 299.99665 * 3 2 1 34 34 H 1.08997 * 109.46956 * 59.99737 * 3 2 1 35 35 H 1.08992 * 109.47400 * 180.02562 * 3 2 1 36 36 H 1.07991 * 120.52645 * 0.02562 * 6 5 4 37 37 H 0.96992 * 119.99555 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.46842 * 299.99900 * 13 11 10 39 39 H 1.08995 * 109.47587 * 59.99803 * 13 11 10 40 40 H 1.09005 * 109.47212 * 179.97438 * 13 11 10 41 41 H 1.09006 * 109.46975 * 55.00199 * 14 11 10 42 42 H 1.09003 * 109.47319 * 175.00067 * 14 11 10 43 43 H 1.09006 * 109.46656 * 299.99820 * 15 14 11 44 44 H 1.08995 * 109.47215 * 59.99106 * 15 14 11 45 45 H 1.09001 * 109.46804 * 299.99349 * 16 15 14 46 46 H 1.08997 * 109.47000 * 59.99829 * 16 15 14 47 47 H 0.96997 * 120.00268 * 0.02562 * 17 16 15 48 48 H 0.97003 * 119.99342 * 180.02562 * 21 20 18 49 49 H 1.08003 * 120.43083 * 180.02562 * 26 7 6 50 50 H 1.08010 * 119.50589 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1987 -1.3130 1.0654 6 6 3.7128 -1.9859 2.1663 7 6 4.9403 -2.6392 2.0461 8 6 5.5288 -3.3695 3.1929 9 8 4.9416 -3.4056 4.2562 10 7 6.7156 -3.9938 3.0570 11 6 7.2978 -4.7154 4.1912 12 1 6.5016 -5.1748 4.7769 13 6 8.0790 -3.7375 5.0711 14 6 8.2423 -5.8022 3.6737 15 6 7.4397 -6.8481 2.8974 16 6 8.3843 -7.9345 2.3794 17 7 7.6155 -8.9363 1.6366 18 6 8.2530 -10.0107 1.0757 19 1 9.3223 -10.1193 1.1806 20 6 7.5247 -10.9598 0.3714 21 7 6.2214 -10.8271 0.2432 22 14 8.3940 -12.4257 -0.3931 23 1 9.0708 -13.2099 0.6709 24 1 7.4000 -13.2854 -1.0846 25 1 9.4022 -11.9476 -1.3729 26 6 5.6008 -2.5851 0.8132 27 6 5.0198 -1.8943 -0.2303 28 7 3.8551 -1.2933 -0.0818 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 3.1709 -2.0039 3.1003 37 1 7.1841 -3.9652 2.2082 38 1 8.8752 -3.2781 4.4854 39 1 7.4062 -2.9632 5.4398 40 1 8.5118 -4.2743 5.9153 41 1 8.9866 -5.3536 3.0157 42 1 8.7428 -6.2799 4.5160 43 1 6.6954 -7.2967 3.5554 44 1 6.9392 -6.3704 2.0552 45 1 9.1282 -7.4855 1.7213 46 1 8.8850 -8.4123 3.2214 47 1 6.6552 -8.8382 1.5414 48 1 5.7125 -11.4904 -0.2487 49 1 6.5524 -3.0784 0.6803 50 1 5.5244 -1.8483 -1.1842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283259749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:16 Heat of formation + Delta-G solvation = -44.225502 kcal Electronic energy + Delta-G solvation = -28097.326209 eV Core-core repulsion = 24124.787808 eV Total energy + Delta-G solvation = -3972.538401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17354 -39.92161 -38.36307 -36.83329 -34.89222 -33.68011 -33.24752 -32.40488 -31.10069 -30.29999 -29.38516 -27.62837 -25.83127 -25.25786 -23.67619 -23.10326 -22.29837 -21.01943 -20.79586 -20.59366 -19.01494 -17.54130 -17.02679 -16.81257 -16.23309 -16.04405 -15.88923 -15.13644 -14.94984 -14.76908 -14.62057 -14.39625 -14.15858 -13.95018 -13.79476 -13.58667 -13.41590 -13.01464 -12.77018 -12.68622 -12.66646 -12.30792 -12.27817 -12.21716 -12.12989 -11.34567 -11.31451 -11.21626 -11.13572 -10.85500 -10.82425 -10.52441 -10.45570 -10.34776 -10.20985 -10.04210 -9.85419 -9.68953 -9.22519 -8.86383 -8.83639 -6.91718 -5.75828 -3.04737 0.41945 0.83832 2.53708 2.68483 3.01239 3.43895 3.47976 3.49453 3.55266 3.93311 4.28339 4.50138 4.54748 4.61453 4.62182 4.65348 4.73863 4.77882 4.89995 4.99214 5.10258 5.18157 5.32169 5.37775 5.38583 5.39381 5.45436 5.48657 5.53168 5.57222 5.59068 5.72223 5.74256 5.75840 5.81090 5.91323 6.02855 6.03707 6.07153 6.17381 6.33580 6.37910 6.39343 6.84984 6.88319 6.95171 7.28246 7.48085 7.69309 7.97025 8.43197 9.53805 10.12825 10.46998 11.47030 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.002199 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.818166 B =12729.622074 C =14573.144035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 C -0.168 4.168 4 O -0.299 6.299 5 C 0.322 3.678 6 C -0.135 4.135 7 C -0.050 4.050 8 C 0.560 3.440 9 O -0.528 6.528 10 N -0.710 5.710 11 C 0.141 3.859 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.123 4.123 15 C -0.127 4.127 16 C 0.153 3.847 17 N -0.734 5.734 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.181 4.181 27 C 0.140 3.860 28 N -0.527 5.527 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.153 0.847 37 H 0.402 0.598 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.256 0.744 49 H 0.143 0.857 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 26.506 1.838 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.143 3.857 6 C -0.156 4.156 7 C -0.061 4.061 8 C 0.346 3.654 9 O -0.404 6.404 10 N -0.362 5.362 11 C 0.037 3.963 12 H 0.110 0.890 13 C -0.221 4.221 14 C -0.161 4.161 15 C -0.164 4.164 16 C 0.025 3.975 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.202 4.202 27 C -0.015 4.015 28 N -0.251 5.251 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.171 0.829 37 H 0.238 0.762 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.161 0.839 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.837 26.810 2.102 27.324 hybrid contribution 0.787 -1.238 -0.511 1.553 sum -4.049 25.573 1.590 25.940 Atomic orbital electron populations 1.21916 0.92741 1.03214 1.03004 1.22383 0.94577 0.92699 0.87910 1.22218 1.02090 0.95621 1.02638 1.86322 1.31331 1.64267 1.38755 1.19632 0.86379 0.90328 0.89336 1.21119 0.95997 0.98915 0.99586 1.20141 0.94584 0.97083 0.94294 1.18053 0.81102 0.79017 0.87234 1.90787 1.61103 1.60586 1.27942 1.45991 1.21089 1.53237 1.15881 1.21126 0.96346 0.91889 0.86970 0.89023 1.22176 1.00224 0.99856 0.99831 1.21864 0.97720 0.95524 1.01040 1.21744 0.98853 0.96217 0.99633 1.20645 0.93450 0.89315 0.94059 1.42375 1.07278 1.24779 1.63418 1.19196 0.92185 0.99611 1.26201 0.91257 1.24766 0.95627 0.99308 1.01433 1.69659 1.05042 1.36922 1.46631 0.86252 0.78231 0.82585 0.79028 1.21267 1.21672 1.21270 1.22182 1.02286 1.02534 0.93186 1.22390 0.89338 0.90949 0.98823 1.67141 1.10469 1.23142 1.24396 0.91590 0.90422 0.91655 0.89107 0.91037 0.91959 0.92020 0.82881 0.76239 0.92422 0.92258 0.91318 0.91325 0.90040 0.91870 0.92091 0.96573 0.96481 0.78332 0.93457 0.83914 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 2 C 0.08 0.69 3.11 -26.73 -0.08 0.60 16 3 C -0.17 -1.21 9.53 37.16 0.35 -0.86 16 4 O -0.30 -3.32 9.76 -18.76 -0.18 -3.50 16 5 C 0.32 3.73 7.45 -17.16 -0.13 3.60 16 6 C -0.13 -1.60 9.61 -38.84 -0.37 -1.97 16 7 C -0.05 -0.57 5.91 -104.68 -0.62 -1.19 16 8 C 0.56 7.12 7.76 -12.19 -0.09 7.03 16 9 O -0.53 -8.43 16.10 5.35 0.09 -8.34 16 10 N -0.71 -7.51 4.49 -54.65 -0.25 -7.75 16 11 C 0.14 1.53 2.57 -67.94 -0.17 1.36 16 12 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 13 C -0.16 -1.52 9.48 37.15 0.35 -1.17 16 14 C -0.12 -1.37 4.75 -26.73 -0.13 -1.50 16 15 C -0.13 -1.94 5.22 -26.73 -0.14 -2.08 16 16 C 0.15 3.01 6.26 -4.04 -0.03 2.99 16 17 N -0.73 -18.86 5.60 -59.91 -0.34 -19.20 16 18 C -0.24 -6.83 9.99 -15.05 -0.15 -6.98 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.18 -1.61 9.61 -39.03 -0.38 -1.99 16 27 C 0.14 1.23 11.16 -17.62 -0.20 1.04 16 28 N -0.53 -5.64 8.61 -13.38 -0.12 -5.75 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.83 6.97 -51.93 -0.36 0.46 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.15 1.84 7.74 -52.49 -0.41 1.44 16 37 H 0.40 3.39 6.74 -40.82 -0.28 3.11 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.14 0.91 6.53 -52.48 -0.34 0.56 16 50 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 415.16 15.07 6.26 6.26 Total: -1.00 -34.38 415.16 -8.74 -43.12 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.38 Total: 7.88 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.52 Total: -2.31 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.03 Total: -60.62 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.10 Total: -11.85 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.38 -8.74 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283259749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.109 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds