Wall clock time and date at job start Tue Mar 31 2020 19:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47571 * 2 1 4 4 O 1.42901 * 109.46823 * 119.99797 * 2 1 3 5 5 C 1.35685 * 116.99899 * 150.00016 * 4 2 1 6 6 C 1.38892 * 119.62339 * 180.02562 * 5 4 2 7 7 C 1.39577 * 118.94708 * 179.97438 * 6 5 4 8 8 C 1.48153 * 120.89201 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00191 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00235 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46997 * 35.00167 * 11 10 8 13 13 C 1.52995 * 109.47289 * 274.99969 * 11 10 8 14 14 C 1.53001 * 109.47177 * 154.99444 * 11 10 8 15 15 C 1.52995 * 109.47588 * 295.00575 * 14 11 10 16 16 C 1.52998 * 109.47258 * 179.97438 * 15 14 11 17 17 N 1.46505 * 109.46718 * 179.97438 * 16 15 14 18 18 C 1.36940 * 119.99306 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00268 * 359.97438 * 18 17 16 20 20 C 1.38821 * 119.99653 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99601 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00058 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46840 * 59.99742 * 22 20 18 24 24 H 1.48500 * 109.47312 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46950 * 299.99756 * 22 20 18 26 26 C 1.39969 * 118.21593 * 0.02562 * 7 6 5 27 27 C 1.37976 * 119.13210 * 359.97438 * 26 7 6 28 28 N 1.31902 * 120.98222 * 359.73074 * 27 26 7 29 29 H 1.09007 * 109.47226 * 300.00655 * 1 2 3 30 30 H 1.09008 * 109.47099 * 59.99927 * 1 2 3 31 31 H 1.08992 * 109.47624 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47195 * 239.99884 * 2 1 3 33 33 H 1.09003 * 109.46440 * 299.99665 * 3 2 1 34 34 H 1.08997 * 109.46956 * 59.99737 * 3 2 1 35 35 H 1.08992 * 109.47400 * 180.02562 * 3 2 1 36 36 H 1.07991 * 120.52645 * 0.02562 * 6 5 4 37 37 H 0.96992 * 119.99555 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.46842 * 299.99900 * 13 11 10 39 39 H 1.08995 * 109.47587 * 59.99803 * 13 11 10 40 40 H 1.09005 * 109.47212 * 179.97438 * 13 11 10 41 41 H 1.09006 * 109.46975 * 55.00199 * 14 11 10 42 42 H 1.09003 * 109.47319 * 175.00067 * 14 11 10 43 43 H 1.09006 * 109.46656 * 299.99820 * 15 14 11 44 44 H 1.08995 * 109.47215 * 59.99106 * 15 14 11 45 45 H 1.09001 * 109.46804 * 299.99349 * 16 15 14 46 46 H 1.08997 * 109.47000 * 59.99829 * 16 15 14 47 47 H 0.96997 * 120.00268 * 0.02562 * 17 16 15 48 48 H 0.97003 * 119.99342 * 180.02562 * 21 20 18 49 49 H 1.08003 * 120.43083 * 180.02562 * 26 7 6 50 50 H 1.08010 * 119.50589 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1987 -1.3130 1.0654 6 6 3.7128 -1.9859 2.1663 7 6 4.9403 -2.6392 2.0461 8 6 5.5288 -3.3695 3.1929 9 8 4.9416 -3.4056 4.2562 10 7 6.7156 -3.9938 3.0570 11 6 7.2978 -4.7154 4.1912 12 1 6.5016 -5.1748 4.7769 13 6 8.0790 -3.7375 5.0711 14 6 8.2423 -5.8022 3.6737 15 6 7.4397 -6.8481 2.8974 16 6 8.3843 -7.9345 2.3794 17 7 7.6155 -8.9363 1.6366 18 6 8.2530 -10.0107 1.0757 19 1 9.3223 -10.1193 1.1806 20 6 7.5247 -10.9598 0.3714 21 7 6.2214 -10.8271 0.2432 22 14 8.3940 -12.4257 -0.3931 23 1 9.0708 -13.2099 0.6709 24 1 7.4000 -13.2854 -1.0846 25 1 9.4022 -11.9476 -1.3729 26 6 5.6008 -2.5851 0.8132 27 6 5.0198 -1.8943 -0.2303 28 7 3.8551 -1.2933 -0.0818 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 3.1709 -2.0039 3.1003 37 1 7.1841 -3.9652 2.2082 38 1 8.8752 -3.2781 4.4854 39 1 7.4062 -2.9632 5.4398 40 1 8.5118 -4.2743 5.9153 41 1 8.9866 -5.3536 3.0157 42 1 8.7428 -6.2799 4.5160 43 1 6.6954 -7.2967 3.5554 44 1 6.9392 -6.3704 2.0552 45 1 9.1282 -7.4855 1.7213 46 1 8.8850 -8.4123 3.2214 47 1 6.6552 -8.8382 1.5414 48 1 5.7125 -11.4904 -0.2487 49 1 6.5524 -3.0784 0.6803 50 1 5.5244 -1.8483 -1.1842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283259749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:15 Heat of formation + Delta-G solvation = -67.804313 kcal Electronic energy + Delta-G solvation = -28098.348663 eV Core-core repulsion = 24124.787808 eV Total energy + Delta-G solvation = -3973.560855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99995 -40.84649 -39.14758 -37.98299 -36.54033 -34.48619 -34.22000 -33.80285 -32.38411 -31.20572 -30.70204 -28.18166 -27.24647 -26.24936 -24.77189 -24.43836 -23.20860 -22.34693 -21.79798 -21.47111 -19.85498 -19.10971 -18.36494 -17.67525 -17.11141 -16.82761 -16.79187 -16.57404 -16.11952 -15.94583 -15.47352 -15.44156 -15.36174 -15.16553 -14.91669 -14.78136 -14.45635 -14.16660 -13.85082 -13.43146 -13.30068 -13.21754 -13.17336 -13.04192 -13.01008 -12.88092 -12.73195 -12.38991 -12.28210 -12.08926 -11.95738 -11.85357 -11.81616 -11.71814 -11.50120 -11.34655 -11.08574 -10.91357 -10.68809 -10.17316 -9.61237 -8.99722 -7.95150 -5.24361 -0.44020 0.05816 1.47281 1.50770 1.56973 1.72829 1.76058 2.17710 2.56429 2.72935 3.21169 3.38452 3.45023 3.64714 3.84505 3.87097 3.94687 3.97611 4.01794 4.04753 4.11973 4.26478 4.29170 4.40938 4.57350 4.59613 4.65901 4.68421 4.70771 4.81098 4.83548 4.83949 4.87480 4.88116 4.92475 4.93345 5.01417 5.13240 5.18238 5.24554 5.32136 5.32284 5.36508 5.44397 5.51454 5.53200 6.19565 6.27265 6.40248 6.69954 7.05017 7.32751 8.10789 8.32123 9.28419 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.002199 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.818166 B =12729.622074 C =14573.144035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 C -0.162 4.162 4 O -0.315 6.315 5 C 0.312 3.688 6 C -0.155 4.155 7 C -0.061 4.061 8 C 0.558 3.442 9 O -0.570 6.570 10 N -0.698 5.698 11 C 0.142 3.858 12 H 0.066 0.934 13 C -0.155 4.155 14 C -0.109 4.109 15 C -0.115 4.115 16 C 0.149 3.851 17 N -0.751 5.751 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.274 1.274 26 C -0.171 4.171 27 C 0.142 3.858 28 N -0.533 5.533 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.139 0.861 37 H 0.415 0.585 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.019 0.981 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.174 0.826 50 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 27.299 0.609 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.220 4.220 4 O -0.223 6.223 5 C 0.133 3.867 6 C -0.177 4.177 7 C -0.072 4.072 8 C 0.345 3.655 9 O -0.449 6.449 10 N -0.350 5.350 11 C 0.038 3.962 12 H 0.085 0.915 13 C -0.213 4.213 14 C -0.147 4.147 15 C -0.153 4.153 16 C 0.023 3.977 17 N -0.393 5.393 18 C -0.378 4.378 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.200 1.200 26 C -0.191 4.191 27 C -0.014 4.014 28 N -0.257 5.257 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.157 0.843 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.202 0.798 48 H 0.060 0.940 49 H 0.191 0.809 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.506 27.632 0.877 27.759 hybrid contribution 0.123 -1.446 -0.128 1.457 sum -2.383 26.185 0.749 26.304 Atomic orbital electron populations 1.21936 0.91361 1.03063 1.04162 1.22626 0.95685 0.93111 0.86867 1.22179 1.01221 0.94904 1.03658 1.86304 1.31343 1.64537 1.40156 1.19678 0.86765 0.90696 0.89533 1.21100 0.96800 1.00325 0.99495 1.20127 0.94731 0.97465 0.94897 1.18305 0.81310 0.78865 0.87054 1.90762 1.62304 1.62268 1.29612 1.45926 1.20411 1.52197 1.16477 1.21075 0.95748 0.92283 0.87077 0.91549 1.22106 1.00064 0.99044 1.00119 1.21765 0.97399 0.94208 1.01322 1.21613 0.98099 0.95979 0.99589 1.20871 0.93990 0.89187 0.93615 1.42659 1.07127 1.25590 1.63956 1.19651 0.92720 1.00140 1.25313 0.90401 1.25640 0.96372 1.02452 1.02758 1.69828 1.06594 1.37902 1.47984 0.85173 0.77088 0.79009 0.78275 1.20402 1.22298 1.20013 1.22507 1.02965 1.01761 0.91872 1.23068 0.88609 0.89591 1.00113 1.67227 1.11219 1.23461 1.23840 0.91490 0.88155 0.92461 0.89746 0.88952 0.91953 0.93266 0.84335 0.74701 0.90514 0.93867 0.90060 0.88844 0.88868 0.93742 0.92246 0.95314 0.96285 0.79765 0.94048 0.80912 0.77979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.21 16 2 C 0.07 1.24 3.11 30.59 0.10 1.33 16 3 C -0.16 -2.24 9.53 71.98 0.69 -1.56 16 4 O -0.32 -7.32 9.76 -90.03 -0.88 -8.20 16 5 C 0.31 7.44 7.45 84.80 0.63 8.07 16 6 C -0.16 -3.92 9.61 22.75 0.22 -3.70 16 7 C -0.06 -1.39 5.91 -19.90 -0.12 -1.51 16 8 C 0.56 14.34 7.76 86.88 0.67 15.01 16 9 O -0.57 -19.13 16.10 -3.76 -0.06 -19.19 16 10 N -0.70 -13.84 4.49 -445.12 -2.00 -15.84 16 11 C 0.14 2.91 2.57 44.99 0.12 3.03 16 12 H 0.07 1.73 7.58 -2.39 -0.02 1.72 16 13 C -0.16 -2.60 9.48 71.98 0.68 -1.92 16 14 C -0.11 -2.13 4.75 30.59 0.15 -1.99 16 15 C -0.11 -3.37 5.22 30.59 0.16 -3.21 16 16 C 0.15 5.65 6.26 86.38 0.54 6.19 16 17 N -0.75 -38.33 5.60 -343.44 -1.92 -40.25 16 18 C -0.25 -13.80 9.99 84.04 0.84 -12.96 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 21 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 22 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 C -0.17 -2.71 9.61 22.63 0.22 -2.50 16 27 C 0.14 2.20 11.16 84.62 0.94 3.14 16 28 N -0.53 -11.03 8.61 -309.13 -2.66 -13.70 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.52 6.97 -2.39 -0.02 1.51 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.14 3.76 7.74 -2.91 -0.02 3.74 16 37 H 0.41 5.88 6.74 -92.71 -0.62 5.25 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 47 H 0.37 20.41 7.67 -92.71 -0.71 19.70 16 48 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.17 1.59 6.53 -2.91 -0.02 1.57 16 50 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -76.10 415.16 1.38 -74.73 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.40 Total: 32.35 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.99 Total: 2.03 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -6.30 Total: -129.82 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.94 Total: -27.38 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.10 1.38 -74.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283259749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.921 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds