Wall clock time and date at job start Tue Mar 31 2020 19:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47394 * 2 1 4 4 C 1.52996 * 109.47416 * 240.00255 * 2 1 3 5 5 C 1.50699 * 109.47328 * 64.99999 * 4 2 1 6 6 O 1.21277 * 119.99952 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99992 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00059 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47178 * 180.02562 * 8 7 5 10 10 N 1.46898 * 109.47014 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00221 * 294.30316 * 10 9 8 12 12 C 1.53240 * 109.34250 * 172.74719 * 11 10 9 13 13 N 1.47079 * 108.52022 * 53.82607 * 12 11 10 14 14 C 1.36941 * 120.88196 * 128.83465 * 13 12 11 15 15 H 1.07991 * 120.00371 * 206.56267 * 14 13 12 16 16 C 1.38814 * 119.99542 * 26.56896 * 14 13 12 17 17 N 1.31622 * 120.00404 * 17.01354 * 16 14 13 18 18 Si 1.86801 * 119.99895 * 197.01636 * 16 14 13 19 19 H 1.48495 * 109.47543 * 89.99541 * 18 16 14 20 20 H 1.48506 * 109.47233 * 210.00115 * 18 16 14 21 21 H 1.48506 * 109.46910 * 329.99782 * 18 16 14 22 22 C 1.47075 * 118.23894 * 308.81913 * 13 12 11 23 23 C 1.46896 * 110.99888 * 169.99729 * 10 9 8 24 24 C 1.50706 * 109.47220 * 119.99716 * 2 1 3 25 25 C 1.34513 * 125.78920 * 239.72037 * 24 2 1 26 26 C 1.41394 * 106.83520 * 179.88987 * 25 24 2 27 27 C 1.34507 * 106.83797 * 0.36827 * 26 25 24 28 28 O 1.34298 * 125.78564 * 60.02402 * 24 2 1 29 29 H 1.09001 * 109.46833 * 60.00181 * 1 2 3 30 30 H 1.09000 * 109.47016 * 300.00558 * 1 2 3 31 31 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47044 * 185.00402 * 4 2 1 33 33 H 1.09000 * 109.46606 * 304.99789 * 4 2 1 34 34 H 0.97006 * 120.00162 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46976 * 300.00085 * 8 7 5 36 36 H 1.09000 * 109.47330 * 60.00047 * 8 7 5 37 37 H 1.08998 * 109.47119 * 299.99853 * 9 8 7 38 38 H 1.09000 * 109.47070 * 59.99743 * 9 8 7 39 39 H 1.09011 * 109.49018 * 292.70465 * 11 10 9 40 40 H 1.08994 * 109.49691 * 52.78360 * 11 10 9 41 41 H 1.08993 * 109.62547 * 294.12069 * 12 11 10 42 42 H 1.09005 * 109.62745 * 173.53280 * 12 11 10 43 43 H 0.96992 * 119.99962 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.62832 * 291.47143 * 22 13 12 45 45 H 1.09004 * 109.79229 * 170.99090 * 22 13 12 46 46 H 1.08995 * 109.49515 * 307.21272 * 23 10 9 47 47 H 1.09006 * 109.49525 * 67.29740 * 23 10 9 48 48 H 1.07997 * 126.58156 * 0.02562 * 25 24 2 49 49 H 1.07997 * 126.57600 * 180.16708 * 26 25 24 50 50 H 1.08006 * 125.78535 * 179.75528 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9846 -0.3918 -3.7001 8 6 1.5967 0.3645 -4.8933 9 6 2.1058 -0.3573 -6.1426 10 7 1.7162 0.4007 -7.3390 11 6 0.2565 0.4115 -7.5033 12 6 -0.1183 1.3565 -8.6499 13 7 0.6395 0.9619 -9.8472 14 6 0.0058 0.7545 -11.0433 15 1 0.4355 0.0841 -11.7729 16 6 -1.1887 1.4060 -11.3180 17 7 -1.5448 2.4551 -10.6073 18 14 -2.2910 0.7939 -12.6963 19 1 -3.2477 -0.2061 -12.1581 20 1 -3.0425 1.9371 -13.2740 21 1 -1.4589 0.1640 -13.7529 22 6 2.0958 0.7963 -9.7257 23 6 2.3834 -0.1266 -8.5367 24 6 2.0324 -0.7104 1.2305 25 6 2.8133 -0.1734 2.1851 26 6 3.0386 -1.1851 3.1469 27 6 2.3887 -2.2819 2.7182 28 8 1.7810 -1.9886 1.5571 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7197 -1.2951 34 1 2.4879 -1.2161 -3.7908 35 1 0.5103 0.4426 -4.9366 36 1 2.0312 1.3631 -4.8478 37 1 3.1921 -0.4358 -6.0995 38 1 1.6709 -1.3558 -6.1879 39 1 -0.0910 -0.5957 -7.7337 40 1 -0.2109 0.7557 -6.5808 41 1 0.1350 2.3810 -8.3776 42 1 -1.1869 1.2816 -8.8517 43 1 -2.3796 2.9101 -10.7991 44 1 2.5619 1.7671 -9.5568 45 1 2.4942 0.3528 -10.6383 46 1 3.4585 -0.1726 -8.3637 47 1 2.0063 -1.1263 -8.7528 48 1 3.1932 0.8371 2.2128 49 1 3.6234 -1.0953 4.0504 50 1 2.3606 -3.2367 3.2223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316971731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:41 Heat of formation + Delta-G solvation = 5.452265 kcal Electronic energy + Delta-G solvation = -28305.248687 eV Core-core repulsion = 24334.864476 eV Total energy + Delta-G solvation = -3970.384212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.90977 -40.01985 -38.25873 -35.87984 -35.06733 -33.97474 -33.24394 -31.51309 -29.94960 -29.79640 -28.86108 -27.73937 -25.75653 -23.60433 -23.05695 -22.55688 -22.07716 -21.34496 -20.76012 -20.03473 -19.11533 -17.80555 -17.04513 -16.80581 -16.33844 -16.11754 -15.93869 -14.98472 -14.96659 -14.89408 -14.45113 -14.33925 -13.78539 -13.70762 -13.44236 -13.40680 -13.34484 -13.14350 -12.98017 -12.93954 -12.68555 -12.45864 -11.75372 -11.66513 -11.61009 -11.44322 -11.31504 -11.24248 -11.05679 -10.75753 -10.45322 -10.31875 -10.24275 -10.05711 -9.94410 -9.75416 -9.61550 -9.10907 -8.78773 -8.50656 -7.90170 -6.67012 -5.77456 -3.19044 1.40632 2.29195 2.48878 2.65457 2.99090 3.38114 3.44883 3.46289 4.19883 4.37015 4.43173 4.51267 4.59621 4.69043 4.71973 4.84584 4.97906 5.08225 5.16774 5.28537 5.30392 5.39711 5.41948 5.46975 5.50369 5.56017 5.67103 5.78583 5.81268 5.82938 5.89456 5.94715 6.03790 6.09707 6.12683 6.16888 6.20152 6.30926 6.35711 6.53111 6.67995 6.82515 6.91858 7.23280 7.32247 7.53422 7.63212 7.69201 7.81470 8.07895 8.43826 9.21607 9.84920 10.43327 11.31312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.001704 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.126544 B =16430.681288 C =16860.567554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.008 3.992 3 H 0.109 0.891 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.534 6.534 7 N -0.729 5.729 8 C 0.120 3.880 9 C 0.045 3.955 10 N -0.529 5.529 11 C 0.031 3.969 12 C 0.178 3.822 13 N -0.595 5.595 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.148 3.852 23 C 0.046 3.954 24 C -0.002 4.002 25 C -0.212 4.212 26 C -0.213 4.213 27 C -0.047 4.047 28 O -0.174 6.174 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.064 0.936 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.254 0.746 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -10.247 25.288 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 H 0.127 0.873 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.381 5.381 8 C -0.003 4.003 9 C -0.084 4.084 10 N -0.255 5.255 11 C -0.098 4.098 12 C 0.052 3.948 13 N -0.319 5.319 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.083 4.083 24 C -0.052 4.052 25 C -0.231 4.231 26 C -0.232 4.232 27 C -0.114 4.114 28 O -0.070 6.070 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.165 0.835 49 H 0.165 0.835 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.643 -9.087 25.174 28.448 hybrid contribution -0.360 -1.545 -0.521 1.670 sum 9.283 -10.632 24.653 28.408 Atomic orbital electron populations 1.21993 0.92887 1.02377 1.03934 1.19527 0.97339 0.97978 0.86242 0.87298 1.21760 1.03305 1.00593 0.92163 1.20471 0.79396 0.85744 0.84426 1.90709 1.39419 1.24416 1.86499 1.45989 1.58055 1.27874 1.06172 1.21394 1.00780 0.95780 0.82365 1.22197 1.00293 0.95042 0.90884 1.61870 1.09208 1.52595 1.01794 1.23006 0.85968 1.00039 1.00772 1.20873 0.97844 0.93454 0.82679 1.44122 1.00311 1.80762 1.06666 1.19204 1.04607 1.20003 0.94472 0.91614 1.25031 1.00498 0.95663 0.98524 1.70028 1.23553 1.18665 1.42438 0.86283 0.80847 0.77849 0.81737 1.21530 1.21726 1.20482 1.20971 0.86867 0.96041 0.93973 1.22626 0.96948 0.97379 0.91354 1.22496 1.01038 0.82610 0.99047 1.21646 1.04051 1.01406 0.95988 1.21840 1.05499 0.93632 1.02262 1.24031 0.99370 1.00933 0.87090 1.84006 1.59458 1.28111 1.35393 0.89429 0.92350 0.92694 0.88494 0.88350 0.76789 0.91033 0.90396 0.90910 0.95036 0.95624 0.91766 0.95428 0.89298 0.93578 0.95609 0.92558 0.91987 0.95364 0.83461 0.83545 0.78218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.92 37.16 0.33 -1.13 16 2 C 0.01 0.07 2.44 -91.77 -0.22 -0.16 16 3 H 0.11 0.97 7.91 -51.92 -0.41 0.56 16 4 C -0.14 -1.06 5.16 -27.89 -0.14 -1.21 16 5 C 0.51 5.54 7.55 -10.99 -0.08 5.45 16 6 O -0.53 -7.80 13.96 5.56 0.08 -7.72 16 7 N -0.73 -7.14 5.56 -60.30 -0.33 -7.47 16 8 C 0.12 1.53 5.61 -4.04 -0.02 1.51 16 9 C 0.04 0.58 5.08 -3.82 -0.02 0.56 16 10 N -0.53 -9.10 4.63 -234.32 -1.08 -10.18 16 11 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 12 C 0.18 4.31 5.42 -3.60 -0.02 4.29 16 13 N -0.60 -15.09 3.04 -172.02 -0.52 -15.61 16 14 C -0.25 -6.99 9.63 -15.06 -0.15 -7.13 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 17 N -0.90 -26.37 11.15 55.49 0.62 -25.76 16 18 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 23 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 24 C 0.00 -0.01 5.83 -35.62 -0.21 -0.22 16 25 C -0.21 -1.78 10.78 -39.70 -0.43 -2.20 16 26 C -0.21 -1.56 10.91 -39.70 -0.43 -2.00 16 27 C -0.05 -0.32 12.09 29.41 0.36 0.03 16 28 O -0.17 -1.56 10.65 5.73 0.06 -1.50 16 29 H 0.09 0.99 5.95 -51.93 -0.31 0.69 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.40 2.71 8.47 -40.82 -0.35 2.36 16 35 H 0.07 1.04 6.40 -51.93 -0.33 0.71 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 38 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 39 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 46 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.20 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -32.87 398.71 -9.72 -42.59 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.32 Total: 0.71 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.19 Total: 2.22 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -1.32 Total: -59.03 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.14 Total: -9.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.87 -9.72 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316971731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.043 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds