Wall clock time and date at job start Tue Mar 31 2020 19:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47394 * 2 1 4 4 C 1.52996 * 109.47416 * 240.00255 * 2 1 3 5 5 C 1.50699 * 109.47328 * 64.99999 * 4 2 1 6 6 O 1.21277 * 119.99952 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99992 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00059 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47178 * 180.02562 * 8 7 5 10 10 N 1.46898 * 109.47014 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00221 * 294.30316 * 10 9 8 12 12 C 1.53240 * 109.34250 * 172.74719 * 11 10 9 13 13 N 1.47079 * 108.52022 * 53.82607 * 12 11 10 14 14 C 1.36941 * 120.88196 * 128.83465 * 13 12 11 15 15 H 1.07991 * 120.00371 * 206.56267 * 14 13 12 16 16 C 1.38814 * 119.99542 * 26.56896 * 14 13 12 17 17 N 1.31622 * 120.00404 * 17.01354 * 16 14 13 18 18 Si 1.86801 * 119.99895 * 197.01636 * 16 14 13 19 19 H 1.48495 * 109.47543 * 89.99541 * 18 16 14 20 20 H 1.48506 * 109.47233 * 210.00115 * 18 16 14 21 21 H 1.48506 * 109.46910 * 329.99782 * 18 16 14 22 22 C 1.47075 * 118.23894 * 308.81913 * 13 12 11 23 23 C 1.46896 * 110.99888 * 169.99729 * 10 9 8 24 24 C 1.50706 * 109.47220 * 119.99716 * 2 1 3 25 25 C 1.34513 * 125.78920 * 239.72037 * 24 2 1 26 26 C 1.41394 * 106.83520 * 179.88987 * 25 24 2 27 27 C 1.34507 * 106.83797 * 0.36827 * 26 25 24 28 28 O 1.34298 * 125.78564 * 60.02402 * 24 2 1 29 29 H 1.09001 * 109.46833 * 60.00181 * 1 2 3 30 30 H 1.09000 * 109.47016 * 300.00558 * 1 2 3 31 31 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47044 * 185.00402 * 4 2 1 33 33 H 1.09000 * 109.46606 * 304.99789 * 4 2 1 34 34 H 0.97006 * 120.00162 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46976 * 300.00085 * 8 7 5 36 36 H 1.09000 * 109.47330 * 60.00047 * 8 7 5 37 37 H 1.08998 * 109.47119 * 299.99853 * 9 8 7 38 38 H 1.09000 * 109.47070 * 59.99743 * 9 8 7 39 39 H 1.09011 * 109.49018 * 292.70465 * 11 10 9 40 40 H 1.08994 * 109.49691 * 52.78360 * 11 10 9 41 41 H 1.08993 * 109.62547 * 294.12069 * 12 11 10 42 42 H 1.09005 * 109.62745 * 173.53280 * 12 11 10 43 43 H 0.96992 * 119.99962 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.62832 * 291.47143 * 22 13 12 45 45 H 1.09004 * 109.79229 * 170.99090 * 22 13 12 46 46 H 1.08995 * 109.49515 * 307.21272 * 23 10 9 47 47 H 1.09006 * 109.49525 * 67.29740 * 23 10 9 48 48 H 1.07997 * 126.58156 * 0.02562 * 25 24 2 49 49 H 1.07997 * 126.57600 * 180.16708 * 26 25 24 50 50 H 1.08006 * 125.78535 * 179.75528 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9846 -0.3918 -3.7001 8 6 1.5967 0.3645 -4.8933 9 6 2.1058 -0.3573 -6.1426 10 7 1.7162 0.4007 -7.3390 11 6 0.2565 0.4115 -7.5033 12 6 -0.1183 1.3565 -8.6499 13 7 0.6395 0.9619 -9.8472 14 6 0.0058 0.7545 -11.0433 15 1 0.4355 0.0841 -11.7729 16 6 -1.1887 1.4060 -11.3180 17 7 -1.5448 2.4551 -10.6073 18 14 -2.2910 0.7939 -12.6963 19 1 -3.2477 -0.2061 -12.1581 20 1 -3.0425 1.9371 -13.2740 21 1 -1.4589 0.1640 -13.7529 22 6 2.0958 0.7963 -9.7257 23 6 2.3834 -0.1266 -8.5367 24 6 2.0324 -0.7104 1.2305 25 6 2.8133 -0.1734 2.1851 26 6 3.0386 -1.1851 3.1469 27 6 2.3887 -2.2819 2.7182 28 8 1.7810 -1.9886 1.5571 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7197 -1.2951 34 1 2.4879 -1.2161 -3.7908 35 1 0.5103 0.4426 -4.9366 36 1 2.0312 1.3631 -4.8478 37 1 3.1921 -0.4358 -6.0995 38 1 1.6709 -1.3558 -6.1879 39 1 -0.0910 -0.5957 -7.7337 40 1 -0.2109 0.7557 -6.5808 41 1 0.1350 2.3810 -8.3776 42 1 -1.1869 1.2816 -8.8517 43 1 -2.3796 2.9101 -10.7991 44 1 2.5619 1.7671 -9.5568 45 1 2.4942 0.3528 -10.6383 46 1 3.4585 -0.1726 -8.3637 47 1 2.0063 -1.1263 -8.7528 48 1 3.1932 0.8371 2.2128 49 1 3.6234 -1.0953 4.0504 50 1 2.3606 -3.2367 3.2223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316971731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:40 Heat of formation + Delta-G solvation = -16.853182 kcal Electronic energy + Delta-G solvation = -28306.215924 eV Core-core repulsion = 24334.864476 eV Total energy + Delta-G solvation = -3971.351448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.48113 -40.92157 -39.73832 -37.01594 -36.07967 -35.35703 -33.81182 -33.31009 -31.65507 -30.86866 -29.64554 -28.75989 -27.30702 -25.03982 -24.31380 -23.92253 -22.68422 -22.54129 -21.57376 -20.85214 -20.67551 -18.75707 -18.44023 -17.71622 -17.32064 -16.95638 -16.87569 -16.64864 -16.13231 -15.84399 -15.71301 -15.41548 -15.31129 -15.14516 -14.92864 -14.69887 -14.40638 -14.07109 -13.98244 -13.69907 -13.49832 -13.31180 -13.21358 -13.00443 -12.82069 -12.63408 -12.61775 -12.41301 -12.26924 -12.21474 -12.03297 -11.96949 -11.85471 -11.55836 -11.42383 -10.83932 -10.80923 -10.59643 -10.06424 -9.35441 -9.30208 -8.69301 -7.87929 -5.33025 0.83574 1.46282 1.47442 1.56682 1.64876 1.73403 2.03292 2.19851 2.50445 3.09288 3.27549 3.61665 3.67731 3.71172 3.87123 3.98936 4.07041 4.13662 4.18147 4.30082 4.33471 4.34831 4.42880 4.47354 4.55264 4.63484 4.65080 4.69745 4.71285 4.82448 4.89724 4.94273 4.95211 5.01761 5.04832 5.06693 5.14724 5.20687 5.21000 5.32575 5.37079 5.48104 5.60856 5.64085 5.67241 6.13920 6.23547 6.25717 6.36727 6.56838 7.12454 7.28185 7.83558 8.37703 9.18907 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.001704 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.126544 B =16430.681288 C =16860.567554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.010 3.990 3 H 0.101 0.899 4 C -0.126 4.126 5 C 0.512 3.488 6 O -0.577 6.577 7 N -0.715 5.715 8 C 0.130 3.870 9 C 0.054 3.946 10 N -0.543 5.543 11 C 0.050 3.950 12 C 0.184 3.816 13 N -0.614 5.614 14 C -0.264 4.264 15 H 0.070 0.930 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.267 1.267 22 C 0.141 3.859 23 C 0.058 3.942 24 C -0.016 4.016 25 C -0.223 4.223 26 C -0.228 4.228 27 C -0.044 4.044 28 O -0.187 6.187 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.417 0.583 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.075 0.925 41 H -0.004 1.004 42 H 0.055 0.945 43 H 0.250 0.750 44 H 0.015 0.985 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.028 0.972 48 H 0.154 0.846 49 H 0.165 0.835 50 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 -13.040 26.510 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 H 0.119 0.881 4 C -0.166 4.166 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.368 5.368 8 C 0.005 3.995 9 C -0.074 4.074 10 N -0.269 5.269 11 C -0.079 4.079 12 C 0.058 3.942 13 N -0.338 5.338 14 C -0.394 4.394 15 H 0.088 0.912 16 C -0.249 4.249 17 N -0.583 5.583 18 Si 0.798 3.202 19 H -0.213 1.213 20 H -0.222 1.222 21 H -0.191 1.191 22 C 0.015 3.985 23 C -0.071 4.071 24 C -0.066 4.066 25 C -0.242 4.242 26 C -0.247 4.247 27 C -0.111 4.111 28 O -0.083 6.083 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.047 0.953 48 H 0.171 0.829 49 H 0.182 0.818 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.610 -11.933 26.405 31.215 hybrid contribution -0.877 -0.651 -0.832 1.373 sum 10.733 -12.584 25.573 30.455 Atomic orbital electron populations 1.21915 0.93837 1.02227 1.02772 1.19424 0.96513 0.97892 0.87031 0.88100 1.21728 1.04698 1.00388 0.89782 1.21040 0.78420 0.85284 0.85327 1.90704 1.41359 1.26506 1.87105 1.45799 1.57816 1.28211 1.05023 1.21093 0.99259 0.95488 0.83668 1.22197 1.02052 0.94758 0.88399 1.61751 1.07345 1.54375 1.03388 1.22603 0.88103 0.98219 0.98962 1.20607 0.96012 0.93152 0.84406 1.44406 1.02282 1.80831 1.06306 1.19571 1.04980 1.19565 0.95260 0.91201 1.25827 1.01941 0.95910 1.01184 1.70200 1.23737 1.20050 1.44342 0.85233 0.78862 0.76975 0.79169 1.21265 1.22249 1.19110 1.21169 0.84309 0.96566 0.96430 1.22468 0.99126 0.95813 0.89667 1.22412 1.01893 0.82930 0.99319 1.21923 1.03921 1.02087 0.96240 1.22150 1.06128 0.93510 1.02870 1.24760 0.98020 1.02132 0.86188 1.83995 1.59954 1.28053 1.36324 0.91605 0.92431 0.92259 0.86208 0.86713 0.74574 0.93295 0.92254 0.87948 0.93616 0.95939 0.90656 0.98613 0.92664 0.94119 0.96729 0.91847 0.88091 0.95349 0.82855 0.81777 0.74913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.92 71.98 0.64 -2.21 16 2 C 0.01 0.17 2.44 -11.54 -0.03 0.14 16 3 H 0.10 1.81 7.91 -2.38 -0.02 1.80 16 4 C -0.13 -1.69 5.16 29.85 0.15 -1.54 16 5 C 0.51 10.45 7.55 87.66 0.66 11.11 16 6 O -0.58 -17.11 13.96 -3.02 -0.04 -17.15 16 7 N -0.72 -12.46 5.56 -463.07 -2.57 -15.03 16 8 C 0.13 3.13 5.61 86.38 0.48 3.61 16 9 C 0.05 1.22 5.08 86.30 0.44 1.66 16 10 N -0.54 -17.73 4.63 -895.26 -4.14 -21.88 16 11 C 0.05 1.96 5.46 86.38 0.47 2.43 16 12 C 0.18 9.30 5.42 86.35 0.47 9.76 16 13 N -0.61 -31.64 3.04 -698.14 -2.12 -33.76 16 14 C -0.26 -14.72 9.63 84.03 0.81 -13.91 16 15 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 16 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 17 N -0.94 -56.83 11.15 21.65 0.24 -56.59 16 18 Si 0.97 45.40 29.59 68.60 2.03 47.43 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.14 5.85 6.69 86.35 0.58 6.43 16 23 C 0.06 1.87 5.62 86.38 0.49 2.35 16 24 C -0.02 -0.26 5.83 24.83 0.14 -0.11 16 25 C -0.22 -3.45 10.78 22.19 0.24 -3.21 16 26 C -0.23 -2.88 10.91 22.19 0.24 -2.64 16 27 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 28 O -0.19 -3.00 10.65 -2.41 -0.03 -3.02 16 29 H 0.07 1.55 5.95 -2.39 -0.01 1.54 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.42 4.18 8.47 -92.70 -0.79 3.40 16 35 H 0.05 1.41 6.40 -2.39 -0.02 1.40 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.80 7.97 -2.39 -0.02 1.78 16 38 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 39 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.08 2.73 6.16 -2.39 -0.01 2.72 16 41 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 42 H 0.06 3.13 6.12 -2.38 -0.01 3.11 16 43 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.06 2.49 7.96 -2.38 -0.02 2.47 16 46 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16 47 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 49 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 50 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -74.34 398.71 0.53 -73.81 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.14 Total: 14.62 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.02 Total: 11.57 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -8.60 Total: -127.26 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.07 Total: -20.17 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.34 0.53 -73.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316971731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.961 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds