Wall clock time and date at job start Tue Mar 31 2020 19:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46974 * 2 1 4 4 C 1.50694 * 109.46841 * 119.99898 * 2 1 3 5 5 C 1.35321 * 126.66523 * 120.00293 * 4 2 1 6 6 C 1.42263 * 103.92112 * 179.97438 * 5 4 2 7 7 C 1.48333 * 126.94033 * 180.02562 * 6 5 4 8 8 O 1.21501 * 119.99578 * 6.11583 * 7 6 5 9 9 N 1.34780 * 120.00365 * 186.11971 * 7 6 5 10 10 C 1.46924 * 120.62716 * 354.96629 * 9 7 6 11 11 C 1.53193 * 108.77580 * 126.41548 * 10 9 7 12 12 C 1.53040 * 109.31235 * 54.62844 * 11 10 9 13 13 C 1.53039 * 109.54140 * 298.63472 * 12 11 10 14 14 H 1.08993 * 109.49642 * 301.38793 * 13 12 11 15 15 C 1.53000 * 109.49845 * 181.31316 * 13 12 11 16 16 H 1.08999 * 109.47617 * 300.00330 * 15 13 12 17 17 C 1.53006 * 109.46615 * 60.00249 * 15 13 12 18 18 N 1.46499 * 109.47046 * 179.97438 * 15 13 12 19 19 C 1.36938 * 119.99745 * 155.00048 * 18 15 13 20 20 H 1.08004 * 119.99945 * 0.02562 * 19 18 15 21 21 C 1.38813 * 119.99889 * 180.02562 * 19 18 15 22 22 N 1.31622 * 120.00070 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00116 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46894 * 90.00248 * 23 21 19 25 25 H 1.48495 * 109.47273 * 210.00286 * 23 21 19 26 26 H 1.48501 * 109.47073 * 330.00634 * 23 21 19 27 27 C 1.46922 * 120.62906 * 174.98373 * 9 7 6 28 28 N 1.30986 * 106.12913 * 0.26102 * 6 5 4 29 29 O 1.20906 * 111.43425 * 359.53606 * 28 6 5 30 30 H 1.08994 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47258 * 300.00081 * 1 2 3 32 32 H 1.09007 * 109.47155 * 60.00243 * 1 2 3 33 33 H 1.08999 * 109.47258 * 239.99919 * 2 1 3 34 34 H 1.08996 * 109.47091 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46982 * 299.99863 * 3 2 1 36 36 H 1.08999 * 109.47194 * 59.99880 * 3 2 1 37 37 H 1.07999 * 128.03493 * 359.97438 * 5 4 2 38 38 H 1.08996 * 109.59026 * 6.62113 * 10 9 7 39 39 H 1.09008 * 109.69782 * 246.26617 * 10 9 7 40 40 H 1.09000 * 109.49290 * 294.67758 * 11 10 9 41 41 H 1.08999 * 109.49469 * 174.58491 * 11 10 9 42 42 H 1.09004 * 109.46065 * 178.61399 * 12 11 10 43 43 H 1.08998 * 109.44890 * 58.65463 * 12 11 10 44 44 H 1.09003 * 109.46546 * 179.97438 * 17 15 13 45 45 H 1.08988 * 109.47194 * 299.99740 * 17 15 13 46 46 H 1.08999 * 109.47061 * 60.00298 * 17 15 13 47 47 H 0.97004 * 120.00495 * 335.00962 * 18 15 13 48 48 H 0.96994 * 120.00165 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.58197 * 113.79918 * 27 9 7 50 50 H 1.09003 * 109.59164 * 353.38051 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8133 -1.8149 1.2636 6 6 2.9918 -2.0664 2.6524 7 6 3.7722 -3.1687 3.2657 8 8 4.4330 -3.9086 2.5641 9 7 3.7483 -3.3496 4.6011 10 6 3.0442 -2.3992 5.4727 11 6 2.0571 -3.1741 6.3513 12 6 2.8058 -4.2786 7.1008 13 6 3.4236 -5.2520 6.0943 14 1 2.6377 -5.6778 5.4706 15 6 4.1440 -6.3738 6.8450 16 1 4.9306 -5.9476 7.4677 17 6 3.1429 -7.1211 7.7283 18 7 4.7346 -7.3055 5.8810 19 6 5.8166 -8.0652 6.2378 20 1 6.2343 -7.9778 7.2300 21 6 6.3766 -8.9477 5.3243 22 7 7.4163 -9.6784 5.6674 23 14 5.6538 -9.0994 3.6085 24 1 6.3199 -8.1289 2.7031 25 1 5.8690 -10.4782 3.1008 26 1 4.1977 -8.8116 3.6575 27 6 4.4261 -4.5006 5.2128 28 7 2.3237 -1.1310 3.2804 29 8 1.7927 -0.3707 2.5045 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 3.2092 -2.3753 0.4295 38 1 2.5015 -1.6770 4.8628 39 1 3.7634 -1.8772 6.1039 40 1 1.2841 -3.6190 5.7247 41 1 1.5977 -2.4943 7.0690 42 1 2.1101 -4.8158 7.7455 43 1 3.5946 -3.8347 7.7080 44 1 3.6561 -7.9206 8.2628 45 1 2.7031 -6.4282 8.4455 46 1 2.3564 -7.5474 7.1056 47 1 4.3594 -7.3842 4.9900 48 1 7.8074 -10.2953 5.0292 49 1 5.2596 -4.1520 5.8227 50 1 4.7954 -5.1650 4.4314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319816084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:13 Heat of formation + Delta-G solvation = 17.612209 kcal Electronic energy + Delta-G solvation = -29843.097634 eV Core-core repulsion = 25873.240717 eV Total energy + Delta-G solvation = -3969.856917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.25468 -41.43197 -39.29989 -37.27067 -36.98716 -35.31930 -34.56879 -33.36776 -32.12108 -31.61492 -30.16708 -28.01254 -27.29916 -26.20468 -24.95475 -24.45173 -24.06549 -22.99622 -21.98005 -21.27548 -19.91064 -19.57966 -18.92313 -18.54757 -17.91232 -17.15419 -16.79400 -16.48564 -16.14344 -15.96414 -15.63084 -15.49914 -15.08818 -14.90676 -14.58294 -14.45194 -14.39302 -14.30509 -14.12011 -14.10123 -13.72848 -13.28827 -13.03052 -13.00433 -12.87270 -12.59095 -12.46372 -12.35389 -12.24973 -12.16959 -11.91937 -11.87241 -11.81875 -11.66447 -11.64521 -11.59689 -11.38603 -11.10735 -11.00184 -10.53908 -9.85638 -9.32731 -8.05057 -5.35843 -0.09404 0.57445 1.30558 1.36800 1.38920 1.53433 1.88620 1.90669 2.43601 2.66893 3.24377 3.27528 3.45466 3.67172 3.75858 3.77763 3.87755 3.97134 4.00086 4.05312 4.14671 4.22059 4.28929 4.38665 4.51053 4.53707 4.63778 4.64862 4.76576 4.79757 4.82410 4.84351 4.91177 4.95195 4.98146 4.98896 5.01031 5.06649 5.15677 5.20683 5.27382 5.37834 5.39164 5.41541 5.43609 5.57538 5.76803 6.09448 6.20331 6.70020 6.96961 7.05768 7.83580 8.00122 9.16746 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002971 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.698080 B = 9422.198706 C =10708.505697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 C -0.150 4.150 4 C 0.002 3.998 5 C -0.199 4.199 6 C -0.035 4.035 7 C 0.582 3.418 8 O -0.567 6.567 9 N -0.591 5.591 10 C 0.069 3.931 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.093 4.093 14 H 0.061 0.939 15 C 0.178 3.822 16 H 0.051 0.949 17 C -0.155 4.155 18 N -0.754 5.754 19 C -0.216 4.216 20 H 0.065 0.935 21 C -0.059 4.059 22 N -0.982 5.982 23 Si 0.941 3.059 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.260 1.260 27 C 0.124 3.876 28 N -0.332 5.332 29 O 0.125 5.875 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.186 0.814 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.044 0.956 47 H 0.359 0.641 48 H 0.256 0.744 49 H 0.073 0.927 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 28.000 -8.190 35.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 C -0.208 4.208 4 C -0.062 4.062 5 C -0.222 4.222 6 C -0.192 4.192 7 C 0.368 3.632 8 O -0.445 6.445 9 N -0.322 5.322 10 C -0.052 4.052 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.113 4.113 14 H 0.079 0.921 15 C 0.070 3.930 16 H 0.069 0.931 17 C -0.215 4.215 18 N -0.397 5.397 19 C -0.347 4.347 20 H 0.083 0.917 21 C -0.251 4.251 22 N -0.633 5.633 23 Si 0.770 3.230 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.186 1.186 27 C 0.002 3.998 28 N -0.035 5.035 29 O 0.052 5.948 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.203 0.797 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.192 0.808 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.462 27.768 -7.081 34.641 hybrid contribution 0.785 -1.489 -1.665 2.368 sum -18.677 26.279 -8.746 33.405 Atomic orbital electron populations 1.21918 0.91978 1.02781 1.04091 1.20107 0.97544 0.96595 0.88840 1.21918 1.01391 0.93368 1.04089 1.25035 0.98045 0.95823 0.87249 1.22634 1.03801 0.99898 0.95821 1.23287 1.03370 0.98415 0.94083 1.17500 0.80535 0.82768 0.82367 1.90808 1.43722 1.47572 1.62420 1.48151 1.52276 1.26632 1.05175 1.22868 0.96119 0.91930 0.94315 1.21862 0.97206 0.98020 0.98908 1.21638 1.00471 0.95694 0.96913 1.21668 0.96872 0.95547 0.97206 0.92063 1.20439 0.93905 0.88438 0.90245 0.93056 1.22302 0.98947 1.00451 0.99751 1.42922 1.35404 1.48125 1.13233 1.19032 1.03810 1.13812 0.98091 0.91749 1.25305 0.98705 0.99597 1.01451 1.69843 1.26651 1.30412 1.36381 0.85615 0.79052 0.76551 0.81757 1.21721 1.21809 1.18554 1.21584 0.94962 0.86544 0.96754 1.73783 1.10277 1.03115 1.16315 1.84733 1.53921 1.41818 1.14283 0.92631 0.91815 0.89133 0.86024 0.92615 0.89118 0.91834 0.79697 0.85374 0.90060 0.92427 0.87363 0.89242 0.90559 0.94765 0.89839 0.93640 0.80849 0.93465 0.90905 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 71.98 0.66 -0.19 16 2 C -0.01 -0.09 3.34 -11.54 -0.04 -0.12 16 3 C -0.15 -0.85 9.18 71.98 0.66 -0.19 16 4 C 0.00 0.03 5.98 25.01 0.15 0.18 16 5 C -0.20 -4.20 10.91 22.60 0.25 -3.95 16 6 C -0.03 -0.93 6.95 42.96 0.30 -0.63 16 7 C 0.58 19.95 7.72 86.93 0.67 20.62 16 8 O -0.57 -24.22 16.39 -3.72 -0.06 -24.28 16 9 N -0.59 -18.14 2.97 -821.74 -2.44 -20.58 16 10 C 0.07 1.54 6.33 86.36 0.55 2.09 16 11 C -0.12 -2.27 6.08 30.67 0.19 -2.09 16 12 C -0.11 -2.35 4.85 30.62 0.15 -2.20 16 13 C -0.09 -2.86 1.97 -10.72 -0.02 -2.88 16 14 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 15 C 0.18 6.63 2.48 44.99 0.11 6.74 16 16 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 17 C -0.16 -5.11 9.14 71.98 0.66 -4.45 16 18 N -0.75 -36.48 4.33 -322.93 -1.40 -37.88 16 19 C -0.22 -12.62 10.41 84.03 0.87 -11.75 16 20 H 0.06 4.04 8.06 -2.91 -0.02 4.02 16 21 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 22 N -0.98 -64.97 13.97 21.65 0.30 -64.67 16 23 Si 0.94 49.58 27.74 68.60 1.90 51.48 16 24 H -0.29 -15.60 7.11 99.48 0.71 -14.90 16 25 H -0.29 -15.23 7.11 99.48 0.71 -14.53 16 26 H -0.26 -12.76 6.52 99.48 0.65 -12.11 16 27 C 0.12 4.32 5.46 86.36 0.47 4.79 16 28 N -0.33 -7.43 8.50 -49.53 -0.42 -7.85 16 29 O 0.12 2.23 11.18 71.85 0.80 3.04 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.12 0.58 8.12 -2.39 -0.02 0.56 16 34 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 36 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.19 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.13 2.79 3.75 -47.02 -0.18 2.62 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.67 6.36 -2.38 -0.02 1.66 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 2.07 6.40 -2.39 -0.02 2.06 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.36 17.62 5.49 -92.71 -0.51 17.11 16 48 H 0.26 16.27 8.31 -92.71 -0.77 15.49 16 49 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.06 2.62 6.55 -2.39 -0.02 2.61 16 Total: -1.00 -78.12 394.45 4.98 -73.14 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.20 Total: 24.82 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.09 Total: 2.80 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -3.96 Total: -130.98 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.74 Total: -21.25 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.90 Total: 51.48 kcal Total: -78.12 4.98 -73.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319816084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.748 kcal (2) G-P(sol) polarization free energy of solvation -78.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds