Wall clock time and date at job start Tue Mar 31 2020 19:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 C 1.50702 * 109.47269 * 119.99741 * 2 1 3 5 5 C 1.35314 * 126.66704 * 119.99640 * 4 2 1 6 6 C 1.42274 * 103.92001 * 180.02562 * 5 4 2 7 7 C 1.48337 * 126.93338 * 179.73869 * 6 5 4 8 8 O 1.21495 * 120.00045 * 353.73035 * 7 6 5 9 9 N 1.34775 * 119.99474 * 173.72870 * 7 6 5 10 10 C 1.46928 * 120.63557 * 4.83631 * 9 7 6 11 11 C 1.53194 * 108.77476 * 233.58725 * 10 9 7 12 12 C 1.53047 * 109.30896 * 305.36045 * 11 10 9 13 13 C 1.53033 * 109.53661 * 61.36915 * 12 11 10 14 14 H 1.09003 * 109.50012 * 58.62115 * 13 12 11 15 15 C 1.53006 * 109.49688 * 178.68024 * 13 12 11 16 16 H 1.08995 * 109.46805 * 59.99795 * 15 13 12 17 17 C 1.52999 * 109.46793 * 300.00012 * 15 13 12 18 18 N 1.46502 * 109.47323 * 180.02562 * 15 13 12 19 19 C 1.36930 * 119.99962 * 205.00121 * 18 15 13 20 20 H 1.07998 * 120.00050 * 0.02562 * 19 18 15 21 21 C 1.38819 * 120.00039 * 179.97438 * 19 18 15 22 22 N 1.31612 * 119.99891 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99803 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46947 * 90.00167 * 23 21 19 25 25 H 1.48504 * 109.46861 * 209.99869 * 23 21 19 26 26 H 1.48500 * 109.47093 * 329.99787 * 23 21 19 27 27 C 1.46926 * 120.62766 * 184.55338 * 9 7 6 28 28 N 1.30974 * 106.12454 * 0.02562 * 6 5 4 29 29 O 1.20909 * 111.44470 * 359.97438 * 28 6 5 30 30 H 1.09006 * 109.47009 * 300.00193 * 1 2 3 31 31 H 1.08999 * 109.47086 * 60.00441 * 1 2 3 32 32 H 1.09002 * 109.47183 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47206 * 239.99457 * 2 1 3 34 34 H 1.09000 * 109.47449 * 59.99606 * 3 2 1 35 35 H 1.09001 * 109.47397 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46959 * 300.00228 * 3 2 1 37 37 H 1.08002 * 128.03643 * 359.97438 * 5 4 2 38 38 H 1.09003 * 109.58129 * 353.36751 * 10 9 7 39 39 H 1.08998 * 109.58822 * 113.79315 * 10 9 7 40 40 H 1.09003 * 109.49992 * 65.31425 * 11 10 9 41 41 H 1.08998 * 109.49495 * 185.41380 * 11 10 9 42 42 H 1.09007 * 109.45463 * 181.38673 * 12 11 10 43 43 H 1.08993 * 109.45704 * 301.35866 * 12 11 10 44 44 H 1.08998 * 109.47475 * 59.99987 * 17 15 13 45 45 H 1.09003 * 109.46672 * 180.02562 * 17 15 13 46 46 H 1.08995 * 109.47268 * 299.99500 * 17 15 13 47 47 H 0.97001 * 120.00005 * 24.99956 * 18 15 13 48 48 H 0.97001 * 119.99912 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.59046 * 246.20572 * 27 9 7 50 50 H 1.09003 * 109.58642 * 6.62938 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8133 -1.8149 1.2637 6 6 2.9909 -2.0669 2.6526 7 6 3.7661 -3.1730 3.2658 8 8 4.2370 -4.0464 2.5646 9 7 3.9480 -3.2091 4.6007 10 6 3.2976 -2.2208 5.4719 11 6 4.3654 -1.5554 6.3459 12 6 5.1500 -2.6345 7.0958 13 6 5.8511 -3.5499 6.0895 14 1 6.5180 -2.9581 5.4625 15 6 6.6617 -4.6083 6.8404 16 1 5.9943 -5.2005 7.4664 17 6 7.7084 -3.9204 7.7191 18 7 7.3331 -5.4839 5.8766 19 6 7.6787 -6.7593 6.2355 20 1 7.4561 -7.1199 7.2288 21 6 8.3144 -7.5892 5.3221 22 7 8.6471 -8.8149 5.6672 23 14 8.6989 -6.9656 3.6037 24 1 10.0448 -6.3383 3.5944 25 1 8.6758 -8.1021 2.6481 26 1 7.6816 -5.9609 3.2026 27 6 4.7956 -4.2412 5.2131 28 7 2.3266 -1.1288 3.2804 29 8 1.7916 -0.3713 2.5045 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.2091 -2.3754 0.4296 38 1 2.8024 -1.4655 4.8616 39 1 2.5646 -2.7191 6.1062 40 1 5.0459 -0.9823 5.7161 41 1 3.8854 -0.8899 7.0634 42 1 5.8943 -2.1625 7.7373 43 1 4.4653 -3.2231 7.7062 44 1 7.2093 -3.2687 8.4362 45 1 8.2862 -4.6744 8.2537 46 1 8.3758 -3.3282 7.0931 47 1 7.5327 -5.1601 4.9843 48 1 9.0910 -9.3949 5.0288 49 1 4.1824 -4.9010 5.8267 50 1 5.2892 -4.8195 4.4319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319816086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:18 Heat of formation + Delta-G solvation = 38.616489 kcal Electronic energy + Delta-G solvation = -29842.944803 eV Core-core repulsion = 25873.998700 eV Total energy + Delta-G solvation = -3968.946103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.36056 -40.16592 -37.92132 -36.57294 -35.64014 -34.23907 -32.95862 -31.81562 -31.17585 -30.10955 -28.62245 -27.70687 -26.14381 -24.75682 -23.70434 -23.43320 -22.81653 -22.07107 -20.69961 -19.77465 -18.87362 -18.03906 -17.62814 -17.55085 -16.89933 -15.93131 -15.49566 -15.20087 -14.91633 -14.74022 -14.49270 -14.08828 -13.99770 -13.88039 -13.76890 -13.36586 -13.10992 -12.94444 -12.86768 -12.72591 -12.45045 -12.39243 -12.05555 -11.82963 -11.81575 -11.56595 -11.43212 -11.15997 -10.99291 -10.85342 -10.75123 -10.68387 -10.47957 -10.33643 -10.16207 -10.05197 -9.80352 -9.75891 -9.50879 -8.89793 -8.58764 -7.21679 -5.71451 -3.06675 0.86348 1.42981 2.53459 2.81775 3.08334 3.45433 3.52481 3.54089 3.69259 3.97130 4.34096 4.50536 4.55578 4.66585 4.68155 4.79884 4.89706 4.94350 4.99822 5.07352 5.10542 5.15925 5.28530 5.31163 5.32337 5.43518 5.53898 5.57497 5.60102 5.64840 5.68852 5.70818 5.75326 5.79435 5.91446 5.95558 6.07194 6.09347 6.16329 6.30161 6.35681 6.43305 6.53261 6.62284 6.84121 7.03080 7.31120 7.74253 8.04189 8.05750 8.47669 9.26156 9.99329 10.18756 11.46853 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002970 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.050516 B = 9426.598588 C =10713.784025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.023 4.023 5 C -0.182 4.182 6 C -0.009 4.009 7 C 0.589 3.411 8 O -0.517 6.517 9 N -0.593 5.593 10 C 0.075 3.925 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.106 4.106 14 H 0.069 0.931 15 C 0.185 3.815 16 H 0.057 0.943 17 C -0.165 4.165 18 N -0.749 5.749 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.878 3.122 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.273 1.273 27 C 0.121 3.879 28 N -0.331 5.331 29 O 0.111 5.889 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.180 0.820 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.073 0.927 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.877 24.112 -7.899 31.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 C -0.209 4.209 4 C -0.086 4.086 5 C -0.204 4.204 6 C -0.168 4.168 7 C 0.374 3.626 8 O -0.391 6.391 9 N -0.326 5.326 10 C -0.048 4.048 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.126 4.126 14 H 0.087 0.913 15 C 0.075 3.925 16 H 0.075 0.925 17 C -0.225 4.225 18 N -0.392 5.392 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.709 3.291 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.199 1.199 27 C 0.000 4.000 28 N -0.037 5.037 29 O 0.042 5.958 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.198 0.802 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.766 23.630 -6.854 30.348 hybrid contribution 0.732 -0.092 -1.817 1.962 sum -17.033 23.538 -8.671 30.321 Atomic orbital electron populations 1.21903 0.92951 1.02901 1.03113 1.19842 0.96865 0.96204 0.90269 1.21903 1.01792 0.94067 1.03117 1.24462 0.99950 0.97059 0.87126 1.22466 1.02679 0.98625 0.96640 1.23603 1.02280 0.97988 0.92913 1.17036 0.79882 0.83499 0.82223 1.90851 1.49535 1.37432 1.61286 1.48068 1.48045 1.31437 1.05047 1.22598 0.95340 0.92522 0.94351 1.21883 0.97981 0.98172 0.98790 1.21643 0.99275 0.96688 0.97719 1.21896 0.96465 0.97323 0.96927 0.91255 1.20151 0.92081 0.89581 0.90644 0.92539 1.22443 1.00163 1.00220 0.99633 1.42829 1.71656 1.12738 1.11972 1.19035 1.31438 0.87147 0.99416 0.89216 1.24636 1.00798 0.95814 0.97710 1.69696 1.46608 1.06879 1.35081 0.86627 0.78350 0.78109 0.86060 1.21260 1.21758 1.19853 1.21906 0.91538 0.88731 0.97846 1.73840 1.10671 1.03263 1.15890 1.84760 1.54375 1.43063 1.13596 0.91674 0.91142 0.91952 0.87636 0.91667 0.91956 0.91146 0.80224 0.85986 0.91341 0.91893 0.90800 0.90986 0.91591 0.93905 0.92323 0.93721 0.80629 0.93135 0.90827 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.18 37.16 0.34 -0.31 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.65 9.18 37.16 0.34 -0.31 16 4 C -0.02 -0.19 5.98 -35.35 -0.21 -0.40 16 5 C -0.18 -1.99 10.91 -39.07 -0.43 -2.41 16 6 C -0.01 -0.12 6.95 -82.53 -0.57 -0.70 16 7 C 0.59 9.91 7.72 -12.11 -0.09 9.81 16 8 O -0.52 -10.56 16.39 5.37 0.09 -10.47 16 9 N -0.59 -9.20 2.97 -173.42 -0.51 -9.71 16 10 C 0.07 0.92 6.33 -3.71 -0.02 0.89 16 11 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 12 C -0.12 -1.43 4.85 -26.69 -0.13 -1.56 16 13 C -0.11 -1.69 1.99 -90.27 -0.18 -1.87 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.19 3.51 2.47 -67.93 -0.17 3.34 16 16 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 17 C -0.16 -2.85 9.14 37.16 0.34 -2.51 16 18 N -0.75 -17.87 4.33 -53.42 -0.23 -18.10 16 19 C -0.24 -6.83 10.41 -15.06 -0.16 -6.99 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -29.94 13.97 55.49 0.78 -29.16 16 23 Si 0.88 23.20 27.74 -169.99 -4.71 18.48 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.27 -7.02 6.52 56.52 0.37 -6.65 16 27 C 0.12 2.09 5.49 -3.48 -0.02 2.08 16 28 N -0.33 -3.97 8.51 33.29 0.28 -3.68 16 29 O 0.11 1.11 11.18 17.24 0.19 1.31 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.11 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 1.46 3.76 -74.10 -0.28 1.19 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.84 6.36 -51.92 -0.33 0.51 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.61 6.40 -51.93 -0.33 0.27 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.36 8.76 5.50 -40.82 -0.22 8.53 16 48 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.10 2.15 6.57 -51.93 -0.34 1.81 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -34.23 394.51 -7.98 -42.21 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.28 Total: 6.03 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.52 Total: -2.83 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.31 Total: -60.66 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.28 Total: -9.17 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.71 Total: 18.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.23 -7.98 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319816086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.823 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds