Wall clock time and date at job start Tue Mar 31 2020 19:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.50700 * 109.47168 * 120.00480 * 2 1 3 5 5 C 1.35317 * 126.67048 * 120.00040 * 4 2 1 6 6 C 1.42275 * 103.92375 * 180.02562 * 5 4 2 7 7 C 1.48326 * 126.93652 * 180.02562 * 6 5 4 8 8 O 1.21494 * 120.00065 * 6.09968 * 7 6 5 9 9 N 1.34777 * 119.99828 * 186.10840 * 7 6 5 10 10 C 1.46927 * 120.62888 * 354.94313 * 9 7 6 11 11 C 1.53194 * 108.77367 * 126.37604 * 10 9 7 12 12 C 1.53038 * 109.31454 * 54.63232 * 11 10 9 13 13 C 1.53047 * 109.53615 * 298.63727 * 12 11 10 14 14 H 1.08999 * 109.49496 * 301.40799 * 13 12 11 15 15 C 1.53000 * 109.49195 * 181.31860 * 13 12 11 16 16 H 1.08998 * 109.47551 * 60.00092 * 15 13 12 17 17 C 1.52999 * 109.47401 * 299.99608 * 15 13 12 18 18 N 1.46509 * 109.47003 * 179.97438 * 15 13 12 19 19 C 1.36934 * 120.00312 * 204.99616 * 18 15 13 20 20 H 1.07999 * 119.99655 * 0.02562 * 19 18 15 21 21 C 1.38809 * 120.00321 * 179.97438 * 19 18 15 22 22 N 1.31623 * 119.99553 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00388 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46851 * 90.00019 * 23 21 19 25 25 H 1.48500 * 109.47162 * 210.00506 * 23 21 19 26 26 H 1.48499 * 109.46910 * 330.00606 * 23 21 19 27 27 C 1.46930 * 120.62859 * 174.92336 * 9 7 6 28 28 N 1.30983 * 106.11819 * 0.25709 * 6 5 4 29 29 O 1.20902 * 111.44668 * 359.53867 * 28 6 5 30 30 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47046 * 299.99868 * 1 2 3 32 32 H 1.08999 * 109.47496 * 59.99716 * 1 2 3 33 33 H 1.09003 * 109.46590 * 239.99856 * 2 1 3 34 34 H 1.08998 * 109.46910 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47120 * 300.00514 * 3 2 1 36 36 H 1.09003 * 109.47005 * 60.00107 * 3 2 1 37 37 H 1.08000 * 128.03191 * 359.97438 * 5 4 2 38 38 H 1.08991 * 109.58971 * 6.58354 * 10 9 7 39 39 H 1.09005 * 109.70305 * 246.22795 * 10 9 7 40 40 H 1.09006 * 109.49002 * 294.68119 * 11 10 9 41 41 H 1.09001 * 109.49604 * 174.58919 * 11 10 9 42 42 H 1.08999 * 109.45794 * 58.65600 * 12 11 10 43 43 H 1.09001 * 109.45720 * 178.61686 * 12 11 10 44 44 H 1.08998 * 109.47164 * 300.00722 * 17 15 13 45 45 H 1.09003 * 109.47004 * 60.00419 * 17 15 13 46 46 H 1.08997 * 109.47269 * 180.02562 * 17 15 13 47 47 H 0.97000 * 119.99272 * 24.99729 * 18 15 13 48 48 H 0.96995 * 119.99847 * 179.97438 * 22 21 19 49 49 H 1.08993 * 109.58752 * 353.41663 * 27 9 7 50 50 H 1.09001 * 109.58023 * 113.70316 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2635 6 6 2.9909 -2.0673 2.6524 7 6 3.7709 -3.1699 3.2655 8 8 4.4319 -3.9096 2.5640 9 7 3.7462 -3.3514 4.6008 10 6 3.0421 -2.4011 5.4725 11 6 2.0535 -3.1758 6.3496 12 6 2.8005 -4.2815 7.0989 13 6 3.4185 -5.2546 6.0922 14 1 2.6329 -5.6789 5.4670 15 6 4.1372 -6.3776 6.8427 16 1 3.4230 -6.9100 7.4708 17 6 5.2409 -5.7811 7.7183 18 7 4.7281 -7.3092 5.8785 19 6 4.9639 -8.6091 6.2386 20 1 4.7140 -8.9478 7.2331 21 6 5.5233 -9.4918 5.3249 22 7 5.8274 -9.0791 4.1126 23 14 5.8444 -11.2653 5.8158 24 1 4.6489 -12.0894 5.5040 25 1 7.0136 -11.7838 5.0613 26 1 6.1257 -11.3325 7.2723 27 6 4.4226 -4.5036 5.2122 28 7 2.3223 -1.1321 3.2802 29 8 1.7919 -0.3714 2.5045 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.2092 -2.3753 0.4294 38 1 2.5007 -1.6779 4.8627 39 1 3.7612 -1.8802 6.1048 40 1 1.2808 -3.6197 5.7218 41 1 1.5940 -2.4963 7.0673 42 1 3.5892 -3.8390 7.7073 43 1 2.1038 -4.8187 7.7425 44 1 5.9551 -5.2487 7.0902 45 1 4.8009 -5.0883 8.4357 46 1 5.7531 -6.5812 8.2526 47 1 4.9522 -7.0050 4.9851 48 1 6.2186 -9.6958 3.4743 49 1 4.7919 -5.1675 4.4307 50 1 5.2572 -4.1562 5.8213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319816087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:21 Heat of formation + Delta-G solvation = 37.878993 kcal Electronic energy + Delta-G solvation = -29765.672777 eV Core-core repulsion = 25796.694694 eV Total energy + Delta-G solvation = -3968.978083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.28436 -40.11152 -37.87391 -36.51140 -35.47100 -34.13968 -32.88971 -31.83754 -31.06971 -29.69055 -27.89945 -27.65358 -26.22554 -24.64714 -23.90881 -23.51593 -23.04678 -22.06302 -20.95710 -19.14318 -18.55937 -17.95431 -17.54173 -17.24562 -16.78381 -15.84566 -15.42900 -15.03728 -14.75315 -14.72036 -14.58000 -14.03269 -13.82216 -13.74094 -13.71294 -13.55848 -13.05079 -13.02097 -12.73605 -12.67572 -12.40916 -12.12019 -11.95645 -11.77221 -11.75988 -11.49475 -11.41360 -10.97244 -10.83913 -10.64041 -10.60070 -10.51322 -10.42621 -10.24353 -10.18515 -10.04872 -9.74915 -9.70390 -9.48673 -8.85784 -8.46351 -6.89932 -5.68623 -2.98326 0.94257 1.51204 2.61016 2.90171 3.18940 3.47543 3.52183 3.54356 3.77511 4.04124 4.40180 4.56265 4.61653 4.65041 4.76535 4.88844 4.99167 5.04413 5.11797 5.15145 5.15606 5.26874 5.33751 5.37950 5.43580 5.49378 5.63235 5.64978 5.69132 5.74166 5.76824 5.81122 5.86204 5.90998 5.97130 6.02930 6.13539 6.17022 6.29643 6.38960 6.43788 6.60671 6.66920 6.79216 6.92063 7.15837 7.40722 7.75971 7.82437 8.15897 8.49035 9.59774 10.17779 10.51946 11.53567 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002622 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.500610 B =10674.679519 C =11771.885139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.024 4.024 5 C -0.181 4.181 6 C -0.008 4.008 7 C 0.588 3.412 8 O -0.513 6.513 9 N -0.593 5.593 10 C 0.075 3.925 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.103 4.103 14 H 0.073 0.927 15 C 0.181 3.819 16 H 0.050 0.950 17 C -0.169 4.169 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.116 3.884 28 N -0.332 5.332 29 O 0.110 5.890 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.181 0.819 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.039 0.961 46 H 0.053 0.947 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.102 0.898 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 24.379 -4.686 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 C -0.208 4.208 4 C -0.087 4.087 5 C -0.203 4.203 6 C -0.167 4.167 7 C 0.373 3.627 8 O -0.386 6.386 9 N -0.325 5.325 10 C -0.048 4.048 11 C -0.169 4.169 12 C -0.153 4.153 13 C -0.123 4.123 14 H 0.091 0.909 15 C 0.070 3.930 16 H 0.068 0.932 17 C -0.229 4.229 18 N -0.368 5.368 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.005 4.005 28 N -0.038 5.038 29 O 0.041 5.959 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.198 0.802 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.120 0.880 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.231 24.031 -3.695 26.782 hybrid contribution 0.584 -1.363 -0.607 1.603 sum -10.647 22.667 -4.302 25.410 Atomic orbital electron populations 1.21903 0.92985 1.02933 1.03063 1.19834 0.96841 0.96165 0.90318 1.21899 1.01770 0.94111 1.03064 1.24451 1.00059 0.97104 0.87115 1.22477 1.02572 0.98580 0.96683 1.23627 1.01939 0.98194 0.92910 1.17034 0.80981 0.82493 0.82228 1.90867 1.41310 1.45255 1.61184 1.48030 1.52764 1.26746 1.04990 1.22571 0.95591 0.92258 0.94333 1.21881 0.98054 0.98154 0.98772 1.21647 0.99683 0.96219 0.97788 1.21779 0.98003 0.95735 0.96770 0.90870 1.20172 0.92954 0.88883 0.90984 0.93234 1.22573 1.00476 1.00200 0.99691 1.42521 1.74197 1.07423 1.12641 1.19216 1.34117 0.86423 0.97272 0.91244 1.24753 1.02025 0.98171 0.96041 1.69677 1.48772 1.34626 1.04707 0.86220 0.77395 0.85358 0.77389 1.21823 1.21835 1.20847 1.21918 0.94458 0.86335 0.97739 1.73830 1.10565 1.03498 1.15887 1.84754 1.54859 1.42662 1.13598 0.91920 0.91697 0.91183 0.87629 0.91964 0.91183 0.91709 0.80177 0.85994 0.91507 0.91846 0.90944 0.91384 0.91603 0.93325 0.94207 0.92836 0.78071 0.93512 0.87965 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.18 37.16 0.34 -0.38 16 2 C -0.01 -0.07 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.69 9.18 37.15 0.34 -0.35 16 4 C -0.02 -0.22 5.98 -35.35 -0.21 -0.43 16 5 C -0.18 -2.07 10.91 -39.07 -0.43 -2.50 16 6 C -0.01 -0.11 6.95 -82.53 -0.57 -0.69 16 7 C 0.59 10.26 7.72 -12.11 -0.09 10.16 16 8 O -0.51 -10.81 16.39 5.37 0.09 -10.72 16 9 N -0.59 -9.54 2.97 -173.71 -0.52 -10.05 16 10 C 0.08 0.97 6.33 -3.71 -0.02 0.95 16 11 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 12 C -0.12 -1.54 4.78 -26.69 -0.13 -1.66 16 13 C -0.10 -1.76 2.33 -90.50 -0.21 -1.97 16 14 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 15 C 0.18 3.61 2.72 -67.93 -0.18 3.43 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.17 -3.05 8.80 37.16 0.33 -2.73 16 18 N -0.73 -18.58 5.04 -53.42 -0.27 -18.85 16 19 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 23 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 2.08 5.20 -3.71 -0.02 2.06 16 28 N -0.33 -4.15 8.50 33.29 0.28 -3.87 16 29 O 0.11 1.16 11.18 17.23 0.19 1.35 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.11 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.12 1.53 3.75 -74.53 -0.28 1.26 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.86 6.50 -51.93 -0.34 0.52 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 45 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.38 10.62 6.17 -40.82 -0.25 10.37 16 48 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 49 H 0.10 2.22 5.63 -51.93 -0.29 1.93 16 50 H 0.07 1.27 6.18 -51.93 -0.32 0.95 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -33.63 392.04 -8.22 -41.84 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.03 Total: 8.45 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.58 Total: -3.62 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.22 Total: -61.13 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.28 Total: -9.37 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.63 -8.22 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319816087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.723 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds