Wall clock time and date at job start Tue Mar 31 2020 19:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.50700 * 109.47168 * 120.00480 * 2 1 3 5 5 C 1.35317 * 126.67048 * 120.00040 * 4 2 1 6 6 C 1.42275 * 103.92375 * 180.02562 * 5 4 2 7 7 C 1.48326 * 126.93652 * 180.02562 * 6 5 4 8 8 O 1.21494 * 120.00065 * 6.09968 * 7 6 5 9 9 N 1.34777 * 119.99828 * 186.10840 * 7 6 5 10 10 C 1.46927 * 120.62888 * 354.94313 * 9 7 6 11 11 C 1.53194 * 108.77367 * 126.37604 * 10 9 7 12 12 C 1.53038 * 109.31454 * 54.63232 * 11 10 9 13 13 C 1.53047 * 109.53615 * 298.63727 * 12 11 10 14 14 H 1.08999 * 109.49496 * 301.40799 * 13 12 11 15 15 C 1.53000 * 109.49195 * 181.31860 * 13 12 11 16 16 H 1.08998 * 109.47551 * 60.00092 * 15 13 12 17 17 C 1.52999 * 109.47401 * 299.99608 * 15 13 12 18 18 N 1.46509 * 109.47003 * 179.97438 * 15 13 12 19 19 C 1.36934 * 120.00312 * 204.99616 * 18 15 13 20 20 H 1.07999 * 119.99655 * 0.02562 * 19 18 15 21 21 C 1.38809 * 120.00321 * 179.97438 * 19 18 15 22 22 N 1.31623 * 119.99553 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00388 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46851 * 90.00019 * 23 21 19 25 25 H 1.48500 * 109.47162 * 210.00506 * 23 21 19 26 26 H 1.48499 * 109.46910 * 330.00606 * 23 21 19 27 27 C 1.46930 * 120.62859 * 174.92336 * 9 7 6 28 28 N 1.30983 * 106.11819 * 0.25709 * 6 5 4 29 29 O 1.20902 * 111.44668 * 359.53867 * 28 6 5 30 30 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47046 * 299.99868 * 1 2 3 32 32 H 1.08999 * 109.47496 * 59.99716 * 1 2 3 33 33 H 1.09003 * 109.46590 * 239.99856 * 2 1 3 34 34 H 1.08998 * 109.46910 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47120 * 300.00514 * 3 2 1 36 36 H 1.09003 * 109.47005 * 60.00107 * 3 2 1 37 37 H 1.08000 * 128.03191 * 359.97438 * 5 4 2 38 38 H 1.08991 * 109.58971 * 6.58354 * 10 9 7 39 39 H 1.09005 * 109.70305 * 246.22795 * 10 9 7 40 40 H 1.09006 * 109.49002 * 294.68119 * 11 10 9 41 41 H 1.09001 * 109.49604 * 174.58919 * 11 10 9 42 42 H 1.08999 * 109.45794 * 58.65600 * 12 11 10 43 43 H 1.09001 * 109.45720 * 178.61686 * 12 11 10 44 44 H 1.08998 * 109.47164 * 300.00722 * 17 15 13 45 45 H 1.09003 * 109.47004 * 60.00419 * 17 15 13 46 46 H 1.08997 * 109.47269 * 180.02562 * 17 15 13 47 47 H 0.97000 * 119.99272 * 24.99729 * 18 15 13 48 48 H 0.96995 * 119.99847 * 179.97438 * 22 21 19 49 49 H 1.08993 * 109.58752 * 353.41663 * 27 9 7 50 50 H 1.09001 * 109.58023 * 113.70316 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2635 6 6 2.9909 -2.0673 2.6524 7 6 3.7709 -3.1699 3.2655 8 8 4.4319 -3.9096 2.5640 9 7 3.7462 -3.3514 4.6008 10 6 3.0421 -2.4011 5.4725 11 6 2.0535 -3.1758 6.3496 12 6 2.8005 -4.2815 7.0989 13 6 3.4185 -5.2546 6.0922 14 1 2.6329 -5.6789 5.4670 15 6 4.1372 -6.3776 6.8427 16 1 3.4230 -6.9100 7.4708 17 6 5.2409 -5.7811 7.7183 18 7 4.7281 -7.3092 5.8785 19 6 4.9639 -8.6091 6.2386 20 1 4.7140 -8.9478 7.2331 21 6 5.5233 -9.4918 5.3249 22 7 5.8274 -9.0791 4.1126 23 14 5.8444 -11.2653 5.8158 24 1 4.6489 -12.0894 5.5040 25 1 7.0136 -11.7838 5.0613 26 1 6.1257 -11.3325 7.2723 27 6 4.4226 -4.5036 5.2122 28 7 2.3223 -1.1321 3.2802 29 8 1.7919 -0.3714 2.5045 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.2092 -2.3753 0.4294 38 1 2.5007 -1.6779 4.8627 39 1 3.7612 -1.8802 6.1048 40 1 1.2808 -3.6197 5.7218 41 1 1.5940 -2.4963 7.0673 42 1 3.5892 -3.8390 7.7073 43 1 2.1038 -4.8187 7.7425 44 1 5.9551 -5.2487 7.0902 45 1 4.8009 -5.0883 8.4357 46 1 5.7531 -6.5812 8.2526 47 1 4.9522 -7.0050 4.9851 48 1 6.2186 -9.6958 3.4743 49 1 4.7919 -5.1675 4.4307 50 1 5.2572 -4.1562 5.8213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319816087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:20 Heat of formation + Delta-G solvation = 17.192411 kcal Electronic energy + Delta-G solvation = -29766.569814 eV Core-core repulsion = 25796.694694 eV Total energy + Delta-G solvation = -3969.875121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.24266 -41.44598 -39.31498 -37.17236 -36.93314 -35.29681 -34.52938 -33.29908 -31.99012 -31.34079 -29.52528 -27.99949 -27.45594 -26.34083 -25.10955 -24.76454 -24.18564 -23.00509 -22.22661 -20.44872 -19.82904 -19.21429 -18.90865 -18.53269 -17.88943 -17.20611 -16.73930 -16.32260 -16.11608 -15.91971 -15.56256 -15.48173 -15.33646 -15.02665 -14.57287 -14.48590 -14.30134 -14.14198 -14.10402 -13.95799 -13.40584 -13.15774 -12.99045 -12.93209 -12.85140 -12.69581 -12.43275 -12.24626 -12.15760 -12.09062 -11.89007 -11.86838 -11.83324 -11.66025 -11.62418 -11.57557 -11.27808 -11.07589 -10.94075 -10.52569 -9.79576 -9.02613 -7.93255 -5.23044 -0.07501 0.59057 1.44056 1.46710 1.55101 1.55688 1.90780 1.93300 2.55182 2.68485 3.26142 3.39259 3.60293 3.76446 3.80725 3.83881 3.89745 3.98923 4.00859 4.12648 4.16034 4.25307 4.30306 4.36815 4.52938 4.57555 4.62616 4.64969 4.75826 4.81263 4.83984 4.85646 4.92565 5.00104 5.00694 5.03780 5.06424 5.08806 5.16918 5.20084 5.29218 5.38714 5.40434 5.41501 5.44939 5.52044 5.64643 6.12155 6.27747 6.73491 6.98795 7.32625 8.10235 8.31962 9.30301 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002622 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.500610 B =10674.679519 C =11771.885139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.150 4.150 4 C 0.002 3.998 5 C -0.200 4.200 6 C -0.034 4.034 7 C 0.579 3.421 8 O -0.566 6.566 9 N -0.591 5.591 10 C 0.070 3.930 11 C -0.123 4.123 12 C -0.108 4.108 13 C -0.090 4.090 14 H 0.045 0.955 15 C 0.173 3.827 16 H 0.050 0.950 17 C -0.158 4.158 18 N -0.742 5.742 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.974 3.026 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.124 3.876 28 N -0.332 5.332 29 O 0.126 5.874 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.185 0.815 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.369 0.631 48 H 0.249 0.751 49 H 0.053 0.947 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 26.886 -3.199 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 C -0.207 4.207 4 C -0.061 4.061 5 C -0.222 4.222 6 C -0.191 4.191 7 C 0.366 3.634 8 O -0.444 6.444 9 N -0.323 5.323 10 C -0.051 4.051 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.111 4.111 14 H 0.064 0.936 15 C 0.065 3.935 16 H 0.068 0.932 17 C -0.217 4.217 18 N -0.382 5.382 19 C -0.368 4.368 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.625 5.625 23 Si 0.803 3.197 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.002 3.998 28 N -0.035 5.035 29 O 0.053 5.947 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.202 0.798 38 H 0.146 0.854 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.202 0.798 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.093 26.572 -2.107 29.697 hybrid contribution 1.061 -2.001 -1.075 2.507 sum -12.032 24.571 -3.181 27.543 Atomic orbital electron populations 1.21920 0.92005 1.02735 1.04123 1.20111 0.97522 0.96658 0.88788 1.21913 1.01411 0.93264 1.04109 1.25035 0.97998 0.95828 0.87274 1.22640 1.03878 0.99891 0.95832 1.23290 1.03349 0.98384 0.94108 1.17530 0.80639 0.82783 0.82433 1.90827 1.43691 1.47450 1.62397 1.48144 1.52413 1.26531 1.05165 1.22863 0.96119 0.91849 0.94289 1.21872 0.97235 0.98075 0.98956 1.21632 1.00411 0.95684 0.96856 1.21608 0.96698 0.95676 0.97074 0.93606 1.20456 0.93574 0.88968 0.90510 0.93195 1.22402 0.99388 1.00260 0.99671 1.42796 1.74600 1.07739 1.13089 1.19659 1.32230 0.87562 0.97324 0.90310 1.25626 1.03042 1.02596 0.96169 1.69873 1.50726 1.35844 1.06011 0.85120 0.76766 0.80112 0.77664 1.21535 1.22494 1.19084 1.21643 0.95166 0.86509 0.96448 1.73766 1.10263 1.03134 1.16300 1.84727 1.53909 1.41785 1.14269 0.92751 0.91784 0.89056 0.86064 0.92572 0.89077 0.91802 0.79788 0.85411 0.89616 0.93036 0.87170 0.89614 0.90126 0.93945 0.89976 0.94533 0.79821 0.94257 0.92804 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.18 71.98 0.66 -0.39 16 2 C -0.01 -0.10 3.34 -11.54 -0.04 -0.14 16 3 C -0.15 -0.97 9.18 71.98 0.66 -0.31 16 4 C 0.00 0.04 5.98 25.01 0.15 0.19 16 5 C -0.20 -4.63 10.91 22.60 0.25 -4.38 16 6 C -0.03 -0.99 6.95 42.96 0.30 -0.70 16 7 C 0.58 21.42 7.72 86.93 0.67 22.09 16 8 O -0.57 -26.03 16.39 -3.70 -0.06 -26.09 16 9 N -0.59 -19.50 2.97 -821.78 -2.44 -21.94 16 10 C 0.07 1.68 6.33 86.36 0.55 2.23 16 11 C -0.12 -2.59 6.08 30.67 0.19 -2.40 16 12 C -0.11 -2.58 4.78 30.62 0.15 -2.43 16 13 C -0.09 -3.12 2.33 -10.72 -0.02 -3.15 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.17 6.95 2.72 44.99 0.12 7.07 16 16 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 17 C -0.16 -5.48 8.80 71.98 0.63 -4.84 16 18 N -0.74 -39.41 5.04 -322.93 -1.63 -41.04 16 19 C -0.24 -13.61 9.93 84.03 0.83 -12.78 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 22 N -0.97 -63.65 13.06 21.65 0.28 -63.36 16 23 Si 0.97 48.23 29.55 68.60 2.03 50.25 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 C 0.12 4.63 5.20 86.36 0.45 5.08 16 28 N -0.33 -7.98 8.50 -49.51 -0.42 -8.40 16 29 O 0.13 2.43 11.18 71.84 0.80 3.23 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.12 0.74 8.12 -2.39 -0.02 0.72 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.13 3.00 3.75 -47.00 -0.18 2.82 16 39 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.79 6.50 -2.39 -0.02 1.78 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.51 6.32 -2.39 -0.02 1.50 16 45 H 0.08 2.15 6.46 -2.39 -0.02 2.14 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.37 21.75 6.17 -92.71 -0.57 21.18 16 48 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 49 H 0.05 2.55 5.63 -2.39 -0.01 2.54 16 50 H 0.08 2.88 6.18 -2.39 -0.01 2.87 16 Total: -1.00 -78.11 392.04 4.78 -73.34 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.21 Total: 33.40 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.01 Total: 0.61 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -4.21 Total: -134.75 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.74 Total: -22.86 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -78.11 4.78 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319816087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.529 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds