Wall clock time and date at job start Tue Mar 31 2020 19:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46863 * 2 1 4 4 C 1.50697 * 109.46977 * 119.99631 * 2 1 3 5 5 C 1.41257 * 126.70871 * 274.99721 * 4 2 1 6 6 C 1.36826 * 103.84902 * 180.02562 * 5 4 2 7 7 C 1.47509 * 126.94222 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00081 * 352.76035 * 7 6 5 9 9 N 1.34780 * 120.00015 * 172.76345 * 7 6 5 10 10 C 1.46932 * 120.62627 * 353.04286 * 9 7 6 11 11 C 1.53184 * 108.77512 * 233.62957 * 10 9 7 12 12 C 1.53031 * 109.31945 * 305.36957 * 11 10 9 13 13 C 1.53039 * 109.53841 * 61.36405 * 12 11 10 14 14 H 1.09002 * 109.50082 * 58.61976 * 13 12 11 15 15 C 1.52995 * 109.50133 * 178.68750 * 13 12 11 16 16 H 1.09002 * 109.47070 * 304.99981 * 15 13 12 17 17 C 1.52997 * 109.47416 * 64.99938 * 15 13 12 18 18 N 1.46499 * 109.47468 * 185.00288 * 15 13 12 19 19 C 1.36940 * 120.00272 * 155.00053 * 18 15 13 20 20 H 1.07992 * 119.99922 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99837 * 179.97438 * 19 18 15 22 22 N 1.31627 * 120.00407 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99772 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47090 * 60.00384 * 23 21 19 25 25 H 1.48506 * 109.46808 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47285 * 299.99986 * 23 21 19 27 27 C 1.46920 * 120.63419 * 173.07040 * 9 7 6 28 28 O 1.34639 * 106.11257 * 0.24250 * 6 5 4 29 29 N 1.20893 * 111.46785 * 359.56549 * 28 6 5 30 30 H 1.09003 * 109.46809 * 300.00222 * 1 2 3 31 31 H 1.09000 * 109.46837 * 60.00302 * 1 2 3 32 32 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47019 * 239.99778 * 2 1 3 34 34 H 1.09000 * 109.47147 * 299.99508 * 3 2 1 35 35 H 1.08993 * 109.47484 * 60.00062 * 3 2 1 36 36 H 1.09000 * 109.46878 * 180.02562 * 3 2 1 37 37 H 1.08006 * 128.07586 * 0.04719 * 5 4 2 38 38 H 1.09007 * 109.58064 * 113.84952 * 10 9 7 39 39 H 1.08993 * 109.70628 * 353.49470 * 10 9 7 40 40 H 1.09007 * 109.49755 * 185.41288 * 11 10 9 41 41 H 1.09000 * 109.49962 * 65.32567 * 11 10 9 42 42 H 1.09000 * 109.46176 * 301.34386 * 12 11 10 43 43 H 1.08999 * 109.45766 * 181.37793 * 12 11 10 44 44 H 1.09002 * 109.46965 * 59.99980 * 17 15 13 45 45 H 1.08997 * 109.47575 * 180.02562 * 17 15 13 46 46 H 1.09003 * 109.47104 * 300.00138 * 17 15 13 47 47 H 0.97005 * 119.99569 * 334.99130 * 18 15 13 48 48 H 0.96992 * 119.99824 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.58415 * 6.58235 * 27 9 7 50 50 H 1.08992 * 109.59016 * 246.15469 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2208 -0.1477 2.5124 6 6 2.6852 -1.1927 3.2637 7 6 3.0500 -1.1641 4.6927 8 8 3.0755 -0.1069 5.2925 9 7 3.3550 -2.3100 5.3334 10 6 3.1828 -3.6085 4.6677 11 6 2.3180 -4.5075 5.5568 12 6 2.9439 -4.5938 6.9506 13 6 2.9928 -3.1984 7.5771 14 1 1.9838 -2.7902 7.6355 15 6 3.5887 -3.2904 8.9832 16 1 3.0211 -4.0111 9.5719 17 6 5.0471 -3.7433 8.8906 18 7 3.5255 -1.9761 9.6274 19 6 3.5040 -1.8834 10.9935 20 1 3.5332 -2.7791 11.5960 21 6 3.4447 -0.6380 11.6037 22 7 3.4087 0.4538 10.8694 23 14 3.4146 -0.5116 13.4672 24 1 4.6460 -1.1261 14.0249 25 1 3.3500 0.9176 13.8653 26 1 2.2233 -1.2257 13.9926 27 6 3.8654 -2.2844 6.7108 28 8 2.7477 -2.2509 2.4336 29 7 2.3778 -1.9618 1.3195 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 2.0400 0.8698 2.8264 38 1 4.1570 -4.0732 4.5159 39 1 2.6920 -3.4658 3.7051 40 1 2.2620 -5.5049 5.1207 41 1 1.3154 -4.0869 5.6338 42 1 3.9556 -4.9915 6.8704 43 1 2.3436 -5.2526 7.5781 44 1 5.6147 -3.0226 8.3019 45 1 5.4715 -3.8093 9.8924 46 1 5.0941 -4.7213 8.4114 47 1 3.4991 -1.1715 9.0861 48 1 3.3668 1.3239 11.2959 49 1 3.8237 -1.2660 7.0971 50 1 4.8952 -2.6412 6.7256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319820824.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:58 Heat of formation + Delta-G solvation = 32.857180 kcal Electronic energy + Delta-G solvation = -29796.592930 eV Core-core repulsion = 25827.397085 eV Total energy + Delta-G solvation = -3969.195845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.23309 -40.19614 -37.97894 -36.93525 -35.50868 -33.13198 -32.72661 -31.95495 -31.93166 -29.76936 -27.88142 -27.59723 -26.05401 -24.66216 -24.31336 -23.26479 -23.13634 -21.79012 -20.95749 -19.63997 -18.73431 -17.98028 -17.69844 -17.09369 -16.60665 -16.11737 -15.17550 -14.95774 -14.80373 -14.69020 -14.61951 -14.12707 -13.92665 -13.75087 -13.70210 -13.59804 -13.09660 -12.87679 -12.76269 -12.57886 -12.46487 -12.06968 -11.93402 -11.89153 -11.71716 -11.53502 -11.23869 -11.04500 -10.98687 -10.82571 -10.64548 -10.45600 -10.34146 -10.32420 -10.25004 -10.16089 -9.87875 -9.81675 -9.52031 -8.87076 -8.56652 -6.91570 -5.70053 -2.99772 0.66750 1.83046 2.42112 2.89610 3.07901 3.47054 3.51334 3.52721 3.65871 4.09308 4.48792 4.61510 4.64968 4.69171 4.76003 4.83991 4.91073 4.97475 5.03719 5.15452 5.20717 5.23086 5.35149 5.41434 5.44920 5.54259 5.59950 5.61291 5.64757 5.73611 5.77472 5.81928 5.84374 5.85271 5.85530 5.95370 6.08060 6.12044 6.24137 6.35066 6.35887 6.52174 6.62335 6.73508 6.90433 7.12377 7.25829 7.74228 7.80203 8.02005 8.47676 9.58496 10.16313 10.50373 11.52014 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002673 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.042164 B =10470.918566 C =11724.346158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.021 3.979 5 C -0.151 4.151 6 C -0.073 4.073 7 C 0.596 3.404 8 O -0.501 6.501 9 N -0.595 5.595 10 C 0.096 3.904 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.104 4.104 14 H 0.076 0.924 15 C 0.181 3.819 16 H 0.050 0.950 17 C -0.170 4.170 18 N -0.725 5.725 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.115 3.885 28 O 0.112 5.888 29 N -0.352 5.352 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.182 0.818 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.039 0.961 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.103 0.897 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -6.558 -23.323 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.205 4.205 4 C -0.137 4.137 5 C -0.173 4.173 6 C -0.138 4.138 7 C 0.380 3.620 8 O -0.375 6.375 9 N -0.328 5.328 10 C -0.026 4.026 11 C -0.171 4.171 12 C -0.153 4.153 13 C -0.124 4.124 14 H 0.094 0.906 15 C 0.070 3.930 16 H 0.068 0.932 17 C -0.230 4.230 18 N -0.367 5.367 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.005 4.005 28 O 0.043 5.957 29 N -0.056 5.056 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.199 0.801 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.121 0.879 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.932 -6.993 -23.645 24.831 hybrid contribution -0.065 1.008 1.272 1.624 sum -2.997 -5.985 -22.373 23.353 Atomic orbital electron populations 1.21843 0.93196 1.02497 1.02732 1.19557 0.96285 0.95536 0.92223 1.21870 1.01619 0.94143 1.02880 1.23589 1.02391 0.90371 0.97328 1.22822 1.01679 1.01436 0.91402 1.24372 1.06933 0.88132 0.94378 1.16713 0.78275 0.84740 0.82286 1.90946 1.51991 1.29885 1.64708 1.48093 1.63528 1.05389 1.15759 1.22120 1.00940 0.83311 0.96274 1.21912 0.99497 0.99420 0.96259 1.21627 1.01289 0.97276 0.95099 1.21803 1.00289 0.94543 0.95794 0.90575 1.20172 0.93288 0.89741 0.89797 0.93203 1.22587 1.00138 0.98886 1.01415 1.42491 1.88524 1.01732 1.03978 1.19166 1.42825 0.92250 0.82880 0.91299 1.24747 1.03054 0.95497 0.97604 1.69662 1.57278 0.96979 1.33876 0.86304 0.77749 0.76513 0.85809 1.21352 1.21758 1.21367 1.22015 0.97133 1.03332 0.78058 1.85088 1.62584 1.34067 1.13958 1.73688 1.14449 1.17102 1.00311 0.91942 0.91402 0.92333 0.89258 0.91394 0.91735 0.92107 0.80051 0.90677 0.88842 0.90616 0.91517 0.91341 0.91423 0.93231 0.92829 0.94247 0.78086 0.93455 0.87850 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.18 37.16 0.34 -0.62 16 2 C -0.02 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.15 -0.94 8.81 37.16 0.33 -0.61 16 4 C 0.02 0.23 6.20 -82.17 -0.51 -0.28 16 5 C -0.15 -1.75 10.13 -38.95 -0.39 -2.14 16 6 C -0.07 -0.94 6.89 -36.32 -0.25 -1.19 16 7 C 0.60 9.28 7.68 -12.48 -0.10 9.18 16 8 O -0.50 -9.72 16.35 5.29 0.09 -9.63 16 9 N -0.60 -8.39 2.97 -174.01 -0.52 -8.90 16 10 C 0.10 1.03 6.14 -3.71 -0.02 1.01 16 11 C -0.13 -1.35 6.08 -26.62 -0.16 -1.52 16 12 C -0.11 -1.37 4.89 -26.70 -0.13 -1.50 16 13 C -0.10 -1.65 2.27 -90.50 -0.21 -1.86 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 15 C 0.18 3.43 2.67 -67.93 -0.18 3.25 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 C -0.17 -2.90 8.76 37.16 0.33 -2.58 16 18 N -0.73 -17.98 5.06 -53.43 -0.27 -18.26 16 19 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.12 1.85 5.19 -3.71 -0.02 1.83 16 28 O 0.11 1.35 7.94 15.56 0.12 1.47 16 29 N -0.35 -4.23 12.04 33.52 0.40 -3.82 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.41 7.48 -51.93 -0.39 0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.18 1.88 7.66 -52.48 -0.40 1.47 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.96 4.29 -52.49 -0.22 0.73 16 40 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.85 6.23 -51.93 -0.32 0.52 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.54 6.60 -51.93 -0.34 0.20 16 47 H 0.38 10.30 6.48 -40.82 -0.26 10.03 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.10 2.05 5.82 -51.93 -0.30 1.75 16 50 H 0.08 1.17 6.06 -51.93 -0.31 0.86 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -32.43 391.16 -8.06 -40.48 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.95 Total: 7.77 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.53 Total: -4.73 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.34 Total: -58.84 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.21 Total: -8.16 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.43 -8.06 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319820824.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.341 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds