Wall clock time and date at job start Tue Mar 31 2020 19:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46863 * 2 1 4 4 C 1.50697 * 109.46977 * 119.99631 * 2 1 3 5 5 C 1.41257 * 126.70871 * 274.99721 * 4 2 1 6 6 C 1.36826 * 103.84902 * 180.02562 * 5 4 2 7 7 C 1.47509 * 126.94222 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00081 * 352.76035 * 7 6 5 9 9 N 1.34780 * 120.00015 * 172.76345 * 7 6 5 10 10 C 1.46932 * 120.62627 * 353.04286 * 9 7 6 11 11 C 1.53184 * 108.77512 * 233.62957 * 10 9 7 12 12 C 1.53031 * 109.31945 * 305.36957 * 11 10 9 13 13 C 1.53039 * 109.53841 * 61.36405 * 12 11 10 14 14 H 1.09002 * 109.50082 * 58.61976 * 13 12 11 15 15 C 1.52995 * 109.50133 * 178.68750 * 13 12 11 16 16 H 1.09002 * 109.47070 * 304.99981 * 15 13 12 17 17 C 1.52997 * 109.47416 * 64.99938 * 15 13 12 18 18 N 1.46499 * 109.47468 * 185.00288 * 15 13 12 19 19 C 1.36940 * 120.00272 * 155.00053 * 18 15 13 20 20 H 1.07992 * 119.99922 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99837 * 179.97438 * 19 18 15 22 22 N 1.31627 * 120.00407 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99772 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47090 * 60.00384 * 23 21 19 25 25 H 1.48506 * 109.46808 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47285 * 299.99986 * 23 21 19 27 27 C 1.46920 * 120.63419 * 173.07040 * 9 7 6 28 28 O 1.34639 * 106.11257 * 0.24250 * 6 5 4 29 29 N 1.20893 * 111.46785 * 359.56549 * 28 6 5 30 30 H 1.09003 * 109.46809 * 300.00222 * 1 2 3 31 31 H 1.09000 * 109.46837 * 60.00302 * 1 2 3 32 32 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47019 * 239.99778 * 2 1 3 34 34 H 1.09000 * 109.47147 * 299.99508 * 3 2 1 35 35 H 1.08993 * 109.47484 * 60.00062 * 3 2 1 36 36 H 1.09000 * 109.46878 * 180.02562 * 3 2 1 37 37 H 1.08006 * 128.07586 * 0.04719 * 5 4 2 38 38 H 1.09007 * 109.58064 * 113.84952 * 10 9 7 39 39 H 1.08993 * 109.70628 * 353.49470 * 10 9 7 40 40 H 1.09007 * 109.49755 * 185.41288 * 11 10 9 41 41 H 1.09000 * 109.49962 * 65.32567 * 11 10 9 42 42 H 1.09000 * 109.46176 * 301.34386 * 12 11 10 43 43 H 1.08999 * 109.45766 * 181.37793 * 12 11 10 44 44 H 1.09002 * 109.46965 * 59.99980 * 17 15 13 45 45 H 1.08997 * 109.47575 * 180.02562 * 17 15 13 46 46 H 1.09003 * 109.47104 * 300.00138 * 17 15 13 47 47 H 0.97005 * 119.99569 * 334.99130 * 18 15 13 48 48 H 0.96992 * 119.99824 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.58415 * 6.58235 * 27 9 7 50 50 H 1.08992 * 109.59016 * 246.15469 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2208 -0.1477 2.5124 6 6 2.6852 -1.1927 3.2637 7 6 3.0500 -1.1641 4.6927 8 8 3.0755 -0.1069 5.2925 9 7 3.3550 -2.3100 5.3334 10 6 3.1828 -3.6085 4.6677 11 6 2.3180 -4.5075 5.5568 12 6 2.9439 -4.5938 6.9506 13 6 2.9928 -3.1984 7.5771 14 1 1.9838 -2.7902 7.6355 15 6 3.5887 -3.2904 8.9832 16 1 3.0211 -4.0111 9.5719 17 6 5.0471 -3.7433 8.8906 18 7 3.5255 -1.9761 9.6274 19 6 3.5040 -1.8834 10.9935 20 1 3.5332 -2.7791 11.5960 21 6 3.4447 -0.6380 11.6037 22 7 3.4087 0.4538 10.8694 23 14 3.4146 -0.5116 13.4672 24 1 4.6460 -1.1261 14.0249 25 1 3.3500 0.9176 13.8653 26 1 2.2233 -1.2257 13.9926 27 6 3.8654 -2.2844 6.7108 28 8 2.7477 -2.2509 2.4336 29 7 2.3778 -1.9618 1.3195 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 2.0400 0.8698 2.8264 38 1 4.1570 -4.0732 4.5159 39 1 2.6920 -3.4658 3.7051 40 1 2.2620 -5.5049 5.1207 41 1 1.3154 -4.0869 5.6338 42 1 3.9556 -4.9915 6.8704 43 1 2.3436 -5.2526 7.5781 44 1 5.6147 -3.0226 8.3019 45 1 5.4715 -3.8093 9.8924 46 1 5.0941 -4.7213 8.4114 47 1 3.4991 -1.1715 9.0861 48 1 3.3668 1.3239 11.2959 49 1 3.8237 -1.2660 7.0971 50 1 4.8952 -2.6412 6.7256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319820824.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:57 Heat of formation + Delta-G solvation = 12.951318 kcal Electronic energy + Delta-G solvation = -29797.456113 eV Core-core repulsion = 25827.397085 eV Total energy + Delta-G solvation = -3970.059028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.16128 -41.40788 -39.29813 -37.66895 -36.98216 -34.76075 -33.58374 -33.35017 -32.92366 -31.40183 -29.41393 -28.12419 -27.17314 -26.27742 -25.25169 -24.66732 -24.27324 -22.72395 -22.11448 -20.68573 -19.99963 -19.25189 -18.92523 -18.56802 -17.64219 -17.34093 -16.71596 -16.29381 -15.98962 -15.66022 -15.51540 -15.36337 -15.27685 -15.03767 -14.84819 -14.47853 -14.27407 -14.08563 -13.97935 -13.90027 -13.36840 -13.08277 -12.97275 -12.89422 -12.78880 -12.65298 -12.54466 -12.32907 -12.26585 -12.10488 -11.91707 -11.82411 -11.80817 -11.76939 -11.54533 -11.28758 -11.20194 -11.11242 -10.90705 -10.86886 -9.75218 -8.98314 -7.90292 -5.19286 -0.36963 0.94033 1.32866 1.46331 1.49778 1.55801 1.74654 2.00278 2.57848 2.86959 3.16377 3.42305 3.61419 3.77404 3.82244 3.88969 3.92412 4.04074 4.05817 4.10464 4.16877 4.19582 4.31728 4.40868 4.45993 4.61768 4.64593 4.70738 4.76695 4.80099 4.82376 4.88490 4.90175 4.92018 4.93219 5.09396 5.11192 5.12300 5.15068 5.26824 5.30205 5.33895 5.34667 5.40924 5.48060 5.56453 5.70619 6.09781 6.31064 6.70020 6.98604 7.36234 8.15072 8.35897 9.32962 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002673 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.042164 B =10470.918566 C =11724.346158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.146 4.146 4 C 0.029 3.971 5 C -0.148 4.148 6 C -0.084 4.084 7 C 0.592 3.408 8 O -0.553 6.553 9 N -0.591 5.591 10 C 0.091 3.909 11 C -0.126 4.126 12 C -0.108 4.108 13 C -0.093 4.093 14 H 0.046 0.954 15 C 0.173 3.827 16 H 0.048 0.952 17 C -0.159 4.159 18 N -0.741 5.741 19 C -0.235 4.235 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.972 3.028 24 H -0.277 1.277 25 H -0.300 1.300 26 H -0.278 1.278 27 C 0.123 3.877 28 O 0.116 5.884 29 N -0.361 5.361 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.189 0.811 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.033 0.967 46 H 0.082 0.918 47 H 0.370 0.630 48 H 0.248 0.752 49 H 0.056 0.944 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -9.084 -25.120 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 C -0.204 4.204 4 C -0.129 4.129 5 C -0.170 4.170 6 C -0.150 4.150 7 C 0.378 3.622 8 O -0.432 6.432 9 N -0.322 5.322 10 C -0.030 4.030 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.113 4.113 14 H 0.065 0.935 15 C 0.065 3.935 16 H 0.066 0.934 17 C -0.218 4.218 18 N -0.381 5.381 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.801 3.199 24 H -0.203 1.203 25 H -0.226 1.226 26 H -0.204 1.204 27 C 0.001 3.999 28 O 0.047 5.953 29 N -0.065 5.065 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.207 0.793 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.202 0.798 48 H 0.057 0.943 49 H 0.075 0.925 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.953 -9.630 -25.463 27.383 hybrid contribution -0.080 1.713 1.728 2.435 sum -3.033 -7.917 -23.735 25.204 Atomic orbital electron populations 1.21842 0.92295 1.02292 1.03603 1.19747 0.96937 0.95980 0.90988 1.21884 1.01293 0.93402 1.03821 1.24045 1.01186 0.89835 0.97853 1.23064 1.00588 1.01569 0.91769 1.23928 1.08443 0.89180 0.93417 1.17011 0.77619 0.84379 0.83206 1.90916 1.54433 1.31706 1.66140 1.48177 1.62492 1.06558 1.14966 1.22439 1.02619 0.81561 0.96346 1.21911 0.98355 1.01076 0.95101 1.21614 1.02961 0.94096 0.95913 1.21627 0.98069 0.97272 0.94302 0.93536 1.20464 0.94975 0.86970 0.91132 0.93358 1.22417 0.97736 1.00986 1.00710 1.42764 1.88580 1.03527 1.03267 1.19608 1.40294 0.92379 0.84428 0.90426 1.25582 1.04259 0.95356 1.02111 1.69854 1.59796 0.97186 1.35530 0.85232 0.78196 0.75926 0.80550 1.20278 1.22606 1.20410 1.21757 0.98069 1.00814 0.79247 1.85079 1.62861 1.33523 1.13821 1.73667 1.14929 1.17794 1.00135 0.92409 0.89250 0.93055 0.88426 0.89352 0.91965 0.92646 0.79348 0.88173 0.88128 0.86902 0.92752 0.89319 0.90439 0.93627 0.94770 0.89946 0.79792 0.94293 0.92510 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 71.98 0.66 -0.97 16 2 C -0.02 -0.23 3.38 -11.54 -0.04 -0.27 16 3 C -0.15 -1.60 8.81 71.98 0.63 -0.97 16 4 C 0.03 0.58 6.20 43.55 0.27 0.85 16 5 C -0.15 -3.40 10.13 22.68 0.23 -3.17 16 6 C -0.08 -2.20 6.89 24.39 0.17 -2.03 16 7 C 0.59 19.17 7.68 86.69 0.67 19.84 16 8 O -0.55 -23.09 16.35 -3.97 -0.06 -23.15 16 9 N -0.59 -16.67 2.97 -822.71 -2.45 -19.11 16 10 C 0.09 1.75 6.14 86.36 0.53 2.28 16 11 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 12 C -0.11 -2.25 4.89 30.62 0.15 -2.11 16 13 C -0.09 -2.92 2.27 -10.72 -0.02 -2.95 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 15 C 0.17 6.56 2.67 44.99 0.12 6.68 16 16 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 17 C -0.16 -5.18 8.76 71.98 0.63 -4.55 16 18 N -0.74 -37.99 5.06 -322.96 -1.63 -39.63 16 19 C -0.24 -13.26 9.93 84.03 0.83 -12.42 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 22 N -0.97 -62.35 13.06 21.65 0.28 -62.07 16 23 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 C 0.12 4.04 5.19 86.37 0.45 4.49 16 28 O 0.12 2.65 7.94 65.85 0.52 3.17 16 29 N -0.36 -8.16 12.04 -48.85 -0.59 -8.75 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.71 7.48 -2.39 -0.02 0.70 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.19 3.97 7.66 -2.91 -0.02 3.95 16 38 H 0.10 1.48 8.14 -2.38 -0.02 1.47 16 39 H 0.10 1.84 4.29 -11.27 -0.05 1.80 16 40 H 0.11 1.23 8.14 -2.38 -0.02 1.22 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.54 6.63 -2.39 -0.02 1.53 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.04 1.51 6.23 -2.39 -0.01 1.50 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.98 6.60 -2.39 -0.02 1.96 16 47 H 0.37 21.02 6.48 -92.70 -0.60 20.42 16 48 H 0.25 15.55 8.31 -92.71 -0.77 14.77 16 49 H 0.06 2.43 5.82 -2.39 -0.01 2.42 16 50 H 0.09 2.74 6.06 -2.39 -0.01 2.72 16 Total: -1.00 -74.43 391.16 4.34 -70.09 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.31 Total: 31.64 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.93 Total: -1.65 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -4.38 Total: -129.56 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.46 Total: -19.98 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -74.43 4.34 -70.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319820824.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.041 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds