Wall clock time and date at job start Tue Mar 31 2020 19:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.52999 * 109.46843 * 239.99877 * 2 1 3 5 5 C 1.53002 * 109.46531 * 175.00239 * 4 2 1 6 6 C 1.53006 * 109.46924 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47271 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.46939 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46926 * 119.99883 * 2 1 3 10 10 C 1.34779 * 120.00109 * 275.00257 * 9 2 1 11 11 O 1.21581 * 119.99969 * 359.97438 * 10 9 2 12 12 N 1.34774 * 119.99602 * 180.02562 * 10 9 2 13 13 C 1.46508 * 119.99681 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47169 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96224 * 270.02412 * 14 13 12 16 16 C 1.38281 * 120.13505 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47063 * 60.00398 * 24 22 20 26 26 H 1.48498 * 109.47240 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47319 * 300.00306 * 24 22 20 28 28 C 1.38073 * 119.96539 * 89.99807 * 14 13 12 29 29 H 1.08994 * 109.46764 * 300.00179 * 1 2 3 30 30 H 1.08999 * 109.46849 * 59.99670 * 1 2 3 31 31 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00015 * 4 2 1 33 33 H 1.08997 * 109.47179 * 55.00200 * 4 2 1 34 34 H 1.09004 * 109.47551 * 299.99776 * 5 4 2 35 35 H 1.08997 * 109.47420 * 60.00109 * 5 4 2 36 36 H 1.09002 * 109.46787 * 299.99573 * 6 5 4 37 37 H 1.08997 * 109.47193 * 59.99712 * 6 5 4 38 38 H 1.09002 * 109.46745 * 299.99450 * 7 6 5 39 39 H 1.08997 * 109.47369 * 59.99671 * 7 6 5 40 40 H 1.00901 * 110.99536 * 180.02562 * 8 7 6 41 41 H 1.00902 * 110.99757 * 303.94593 * 8 7 6 42 42 H 0.96997 * 119.99475 * 94.99708 * 9 2 1 43 43 H 0.96993 * 120.00552 * 359.97438 * 12 10 9 44 44 H 1.09004 * 109.46757 * 59.99773 * 13 12 10 45 45 H 1.08998 * 109.46890 * 300.00426 * 13 12 10 46 46 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 47 47 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 48 48 H 1.08001 * 120.03256 * 180.31909 * 17 16 15 49 49 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 50 50 H 1.07996 * 120.03547 * 0.04988 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0748 -1.3341 -2.5632 7 6 5.5997 -1.2267 -2.6273 8 7 6.0894 -1.9192 -3.8267 9 7 2.0184 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3572 11 8 1.8583 1.1615 2.4117 12 7 2.5967 -0.6535 3.4575 13 6 2.7371 0.0774 4.7194 14 6 3.2547 -0.8543 5.7847 15 6 2.3667 -1.5717 6.5659 16 6 2.8376 -2.4281 7.5442 17 6 4.1971 -2.5745 7.7397 18 6 5.0909 -1.8515 6.9610 19 8 6.4275 -1.9887 7.1548 20 6 6.8200 -2.7488 8.1970 21 1 6.0861 -3.2815 8.7835 22 6 8.1659 -2.8466 8.5156 23 7 9.0598 -2.1974 7.8014 24 14 8.7097 -3.8992 9.9598 25 1 8.2918 -5.3058 9.7322 26 1 10.1876 -3.8363 10.0895 27 1 8.0818 -3.3918 11.2063 28 6 4.6147 -0.9914 5.9797 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3573 35 1 3.9995 -1.0728 -0.4259 36 1 3.7865 -2.3844 -2.5199 37 1 3.6402 -0.8742 -3.4507 38 1 5.8885 -0.1765 -2.6704 39 1 6.0340 -1.6868 -1.7398 40 1 7.0947 -1.8629 -3.8916 41 1 5.7796 -2.8794 -3.8416 42 1 2.2490 -1.6317 1.1526 43 1 2.8274 -1.5946 3.4139 44 1 1.7665 0.4715 5.0209 45 1 3.4381 0.9014 4.5859 46 1 1.3033 -1.4628 6.4115 47 1 2.1419 -2.9865 8.1527 48 1 4.5644 -3.2473 8.5004 49 1 10.0013 -2.2656 8.0246 50 1 5.3074 -0.4307 5.3697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325353984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:37 Heat of formation + Delta-G solvation = -57.840125 kcal Electronic energy + Delta-G solvation = -27798.021472 eV Core-core repulsion = 23824.892697 eV Total energy + Delta-G solvation = -3973.128776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12542 -39.12218 -37.51232 -36.76970 -35.71945 -34.37846 -32.89084 -32.35310 -31.28233 -30.11142 -29.07108 -27.62274 -25.91524 -25.07483 -23.47216 -21.76612 -21.50178 -21.37555 -20.78540 -20.67796 -18.63678 -17.61661 -17.03766 -16.57266 -16.32279 -15.60960 -15.50788 -15.11703 -14.95513 -14.77729 -14.54944 -14.42390 -14.33234 -13.88284 -13.62283 -13.52242 -13.31180 -13.29550 -12.71984 -12.46304 -12.39455 -12.36177 -12.14366 -11.89377 -11.70060 -11.53661 -11.38904 -11.24436 -10.94118 -10.89737 -10.85267 -10.83205 -10.72081 -10.51079 -10.13545 -9.43361 -9.25959 -9.09185 -8.90872 -8.75717 -8.26580 -7.34729 -6.50979 -4.10636 1.86081 2.25102 2.87606 3.08754 3.10392 3.12904 3.29291 3.90853 4.04936 4.26339 4.47281 4.55932 4.63039 4.66124 4.87772 4.93024 5.00581 5.05418 5.12865 5.21267 5.27848 5.37182 5.39793 5.47287 5.51399 5.53244 5.61001 5.69465 5.76719 5.79374 5.84236 5.92295 5.97948 6.02868 6.06147 6.07275 6.23796 6.49079 6.54530 6.58336 6.72719 6.80374 6.94304 7.00149 7.02592 7.18124 7.25902 7.33905 7.69393 7.93024 8.07504 8.67237 8.94283 9.62933 10.66725 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.002257 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.767884 B =12402.869286 C =14799.276641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.088 0.912 4 C -0.125 4.125 5 C -0.120 4.120 6 C -0.117 4.117 7 C 0.057 3.943 8 N -0.855 5.855 9 N -0.743 5.743 10 C 0.704 3.296 11 O -0.596 6.596 12 N -0.737 5.737 13 C 0.187 3.813 14 C -0.072 4.072 15 C -0.194 4.194 16 C -0.077 4.077 17 C -0.226 4.226 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.394 4.394 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.269 1.269 28 C -0.170 4.170 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.342 0.658 41 H 0.339 0.661 42 H 0.394 0.606 43 H 0.398 0.602 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.127 0.873 49 H 0.271 0.729 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 -1.154 -16.922 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.074 4.074 8 N -0.384 5.384 9 N -0.399 5.399 10 C 0.403 3.597 11 O -0.474 6.474 12 N -0.392 5.392 13 C 0.064 3.936 14 C -0.073 4.073 15 C -0.214 4.214 16 C -0.095 4.095 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.080 6.080 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.228 0.772 43 H 0.232 0.768 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.145 0.855 49 H 0.081 0.919 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.704 0.637 -17.391 21.546 hybrid contribution 1.023 -2.171 1.541 2.853 sum -11.682 -1.534 -15.849 19.749 Atomic orbital electron populations 1.22205 0.95629 1.01922 1.02516 1.20803 0.93555 0.97373 0.82810 0.89404 1.21895 0.95944 1.01097 0.97343 1.21566 0.95116 1.01242 0.97890 1.21578 0.94744 1.00696 0.98460 1.21845 0.95516 0.99377 0.90652 1.58762 1.16909 1.20676 1.42017 1.45227 1.72150 1.13553 1.08999 1.15967 0.78305 0.85073 0.80306 1.90905 1.57468 1.14375 1.84668 1.45268 1.70810 1.14064 1.09082 1.19983 1.00861 0.92775 0.80008 1.19288 0.92753 0.98175 0.97071 1.20488 0.98063 1.02415 1.00413 1.20747 0.94733 0.97228 0.96783 1.21235 0.93162 1.05408 1.04732 1.19330 0.85138 0.92673 0.93268 1.83981 1.15994 1.62188 1.45797 1.21275 0.92649 1.25850 1.07221 0.89097 1.25291 0.94668 0.97710 0.98768 1.70023 1.01926 1.39497 1.38158 0.85782 0.78077 0.79532 0.80060 1.19494 1.20238 1.19453 1.20093 0.94266 1.02893 1.01751 0.91915 0.91844 0.92682 0.91438 0.90302 0.91622 0.91661 0.92260 0.91224 0.91002 0.95361 0.84606 0.84894 0.77240 0.76841 0.91183 0.91090 0.87504 0.87306 0.85495 0.91892 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.16 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 C -0.12 -0.80 4.75 -26.73 -0.13 -0.93 16 5 C -0.12 -0.87 5.10 -26.73 -0.14 -1.00 16 6 C -0.12 -0.80 5.47 -26.73 -0.15 -0.95 16 7 C 0.06 0.43 6.79 -3.82 -0.03 0.41 16 8 N -0.85 -6.07 9.62 -10.37 -0.10 -6.17 16 9 N -0.74 -7.31 4.53 -58.67 -0.27 -7.57 16 10 C 0.70 9.65 8.53 -86.92 -0.74 8.90 16 11 O -0.60 -10.47 16.01 5.29 0.08 -10.38 16 12 N -0.74 -9.65 5.55 -66.41 -0.37 -10.02 16 13 C 0.19 2.78 5.80 -5.19 -0.03 2.75 16 14 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 15 C -0.19 -3.15 9.70 -39.53 -0.38 -3.53 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 17 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 18 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 19 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 20 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 21 H 0.09 2.27 5.21 -52.49 -0.27 2.00 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 24 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 28 C -0.17 -3.42 9.65 -39.39 -0.38 -3.80 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 7.75 -51.93 -0.40 0.12 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.34 2.05 9.08 -39.29 -0.36 1.69 16 41 H 0.34 2.01 8.99 -39.29 -0.35 1.65 16 42 H 0.39 2.99 8.62 -40.82 -0.35 2.64 16 43 H 0.40 4.57 8.48 -40.82 -0.35 4.22 16 44 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 45 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 49 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 415.36 15.07 6.26 6.26 Total: -1.00 -32.26 415.36 -10.06 -42.32 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.24 Total: 12.16 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.16 Total: -12.68 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.02 Total: -47.83 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.26 -10.06 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325353984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.516 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds