Wall clock time and date at job start Tue Mar 31 2020 19:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.52999 * 109.46843 * 239.99877 * 2 1 3 5 5 C 1.53002 * 109.46531 * 175.00239 * 4 2 1 6 6 C 1.53006 * 109.46924 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47271 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.46939 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46926 * 119.99883 * 2 1 3 10 10 C 1.34779 * 120.00109 * 275.00257 * 9 2 1 11 11 O 1.21581 * 119.99969 * 359.97438 * 10 9 2 12 12 N 1.34774 * 119.99602 * 180.02562 * 10 9 2 13 13 C 1.46508 * 119.99681 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47169 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96224 * 270.02412 * 14 13 12 16 16 C 1.38281 * 120.13505 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47063 * 60.00398 * 24 22 20 26 26 H 1.48498 * 109.47240 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47319 * 300.00306 * 24 22 20 28 28 C 1.38073 * 119.96539 * 89.99807 * 14 13 12 29 29 H 1.08994 * 109.46764 * 300.00179 * 1 2 3 30 30 H 1.08999 * 109.46849 * 59.99670 * 1 2 3 31 31 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00015 * 4 2 1 33 33 H 1.08997 * 109.47179 * 55.00200 * 4 2 1 34 34 H 1.09004 * 109.47551 * 299.99776 * 5 4 2 35 35 H 1.08997 * 109.47420 * 60.00109 * 5 4 2 36 36 H 1.09002 * 109.46787 * 299.99573 * 6 5 4 37 37 H 1.08997 * 109.47193 * 59.99712 * 6 5 4 38 38 H 1.09002 * 109.46745 * 299.99450 * 7 6 5 39 39 H 1.08997 * 109.47369 * 59.99671 * 7 6 5 40 40 H 1.00901 * 110.99536 * 180.02562 * 8 7 6 41 41 H 1.00902 * 110.99757 * 303.94593 * 8 7 6 42 42 H 0.96997 * 119.99475 * 94.99708 * 9 2 1 43 43 H 0.96993 * 120.00552 * 359.97438 * 12 10 9 44 44 H 1.09004 * 109.46757 * 59.99773 * 13 12 10 45 45 H 1.08998 * 109.46890 * 300.00426 * 13 12 10 46 46 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 47 47 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 48 48 H 1.08001 * 120.03256 * 180.31909 * 17 16 15 49 49 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 50 50 H 1.07996 * 120.03547 * 0.04988 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0748 -1.3341 -2.5632 7 6 5.5997 -1.2267 -2.6273 8 7 6.0894 -1.9192 -3.8267 9 7 2.0184 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3572 11 8 1.8583 1.1615 2.4117 12 7 2.5967 -0.6535 3.4575 13 6 2.7371 0.0774 4.7194 14 6 3.2547 -0.8543 5.7847 15 6 2.3667 -1.5717 6.5659 16 6 2.8376 -2.4281 7.5442 17 6 4.1971 -2.5745 7.7397 18 6 5.0909 -1.8515 6.9610 19 8 6.4275 -1.9887 7.1548 20 6 6.8200 -2.7488 8.1970 21 1 6.0861 -3.2815 8.7835 22 6 8.1659 -2.8466 8.5156 23 7 9.0598 -2.1974 7.8014 24 14 8.7097 -3.8992 9.9598 25 1 8.2918 -5.3058 9.7322 26 1 10.1876 -3.8363 10.0895 27 1 8.0818 -3.3918 11.2063 28 6 4.6147 -0.9914 5.9797 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3573 35 1 3.9995 -1.0728 -0.4259 36 1 3.7865 -2.3844 -2.5199 37 1 3.6402 -0.8742 -3.4507 38 1 5.8885 -0.1765 -2.6704 39 1 6.0340 -1.6868 -1.7398 40 1 7.0947 -1.8629 -3.8916 41 1 5.7796 -2.8794 -3.8416 42 1 2.2490 -1.6317 1.1526 43 1 2.8274 -1.5946 3.4139 44 1 1.7665 0.4715 5.0209 45 1 3.4381 0.9014 4.5859 46 1 1.3033 -1.4628 6.4115 47 1 2.1419 -2.9865 8.1527 48 1 4.5644 -3.2473 8.5004 49 1 10.0013 -2.2656 8.0246 50 1 5.3074 -0.4307 5.3697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325353984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:36 Heat of formation + Delta-G solvation = -81.052474 kcal Electronic energy + Delta-G solvation = -27799.028035 eV Core-core repulsion = 23824.892697 eV Total energy + Delta-G solvation = -3974.135339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24810 -40.71199 -38.65464 -38.01050 -36.46511 -35.65351 -34.29653 -33.65818 -32.37645 -31.25089 -30.60195 -28.22120 -27.55726 -26.68935 -24.16795 -23.27280 -22.62881 -22.16548 -21.96582 -21.56656 -19.91427 -19.25915 -18.66540 -17.51422 -16.95701 -16.86441 -16.60864 -16.35081 -16.13017 -16.09056 -15.78338 -15.53625 -15.45090 -15.28177 -14.92214 -14.63954 -14.37755 -14.08300 -13.94194 -13.91489 -13.66211 -13.34261 -13.07934 -13.01448 -12.98470 -12.52353 -12.49112 -12.37895 -12.27759 -12.17350 -12.14694 -11.88036 -11.53202 -11.48746 -11.32718 -11.20865 -10.80632 -10.33977 -9.78477 -9.74100 -9.66782 -9.03895 -8.47374 -6.16002 0.36851 0.70220 1.35301 1.45437 1.51344 1.84243 2.17130 2.19382 2.81433 3.12722 3.36550 3.44912 3.49537 3.83338 3.88617 4.01464 4.06508 4.09535 4.25073 4.30992 4.36463 4.43253 4.50777 4.53033 4.56823 4.66172 4.72707 4.75038 4.80371 4.87341 4.92078 5.00727 5.02021 5.07651 5.11277 5.18104 5.25524 5.33938 5.36658 5.44433 5.47426 5.62180 5.67638 5.70407 5.72022 6.00384 6.03832 6.16866 6.18508 6.54029 6.97365 7.11232 7.61417 7.77694 8.75545 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.002257 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.767884 B =12402.869286 C =14799.276641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.108 4.108 7 C 0.055 3.945 8 N -0.860 5.860 9 N -0.727 5.727 10 C 0.701 3.299 11 O -0.636 6.636 12 N -0.731 5.731 13 C 0.194 3.806 14 C -0.057 4.057 15 C -0.167 4.167 16 C -0.069 4.069 17 C -0.234 4.234 18 C 0.112 3.888 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.104 0.896 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.017 2.983 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.181 4.181 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.347 0.653 41 H 0.346 0.654 42 H 0.408 0.592 43 H 0.407 0.593 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.121 0.879 49 H 0.272 0.728 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 -2.846 -17.287 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.076 4.076 8 N -0.390 5.390 9 N -0.383 5.383 10 C 0.401 3.599 11 O -0.518 6.518 12 N -0.387 5.387 13 C 0.070 3.930 14 C -0.058 4.058 15 C -0.186 4.186 16 C -0.087 4.087 17 C -0.253 4.253 18 C 0.062 3.938 19 O -0.139 6.139 20 C -0.489 4.489 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.560 5.560 24 Si 0.837 3.163 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.182 1.182 28 C -0.200 4.200 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.244 0.756 43 H 0.243 0.757 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.165 0.835 47 H 0.167 0.833 48 H 0.139 0.861 49 H 0.081 0.919 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.970 -1.097 -17.795 23.936 hybrid contribution 1.701 -1.544 1.485 2.735 sum -14.270 -2.642 -16.310 21.832 Atomic orbital electron populations 1.22146 0.94821 1.02677 1.02021 1.20908 0.94134 0.96428 0.83263 0.91935 1.21827 0.94998 1.01896 0.96372 1.21522 0.95875 1.00408 0.97752 1.21494 0.93971 1.01133 0.98033 1.21838 0.96235 0.98896 0.90641 1.58769 1.17461 1.21233 1.41577 1.45146 1.71003 1.14118 1.08078 1.16107 0.78066 0.84639 0.81078 1.90882 1.59259 1.16276 1.85364 1.45069 1.70746 1.14372 1.08501 1.19829 1.00942 0.92008 0.80192 1.19437 0.91283 0.97778 0.97280 1.20994 0.99875 0.99671 0.98079 1.21164 0.93583 0.97032 0.96943 1.21372 0.94582 1.05068 1.04293 1.19856 0.84422 0.94499 0.95070 1.83948 1.18485 1.64270 1.47181 1.21789 0.93461 1.26082 1.07578 0.87887 1.26581 0.94441 0.99159 1.01865 1.70178 1.02272 1.42553 1.40963 0.84662 0.77584 0.77952 0.76137 1.17966 1.19864 1.18213 1.20211 0.95783 1.02721 1.01333 0.94623 0.90157 0.91214 0.89667 0.88826 0.92926 0.92637 0.91292 0.91218 0.91901 0.96037 0.84051 0.84081 0.75592 0.75714 0.89913 0.92434 0.83469 0.83303 0.86118 0.91884 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 71.98 0.68 -1.66 16 2 C 0.16 2.57 2.57 44.99 0.12 2.68 16 3 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 4 C -0.11 -1.18 4.75 30.59 0.15 -1.03 16 5 C -0.12 -1.56 5.10 30.60 0.16 -1.40 16 6 C -0.11 -1.32 5.47 30.60 0.17 -1.16 16 7 C 0.05 0.81 6.79 86.30 0.59 1.39 16 8 N -0.86 -11.49 9.62 -186.71 -1.80 -13.29 16 9 N -0.73 -13.17 4.53 -457.81 -2.08 -15.24 16 10 C 0.70 18.48 8.53 179.05 1.53 20.01 16 11 O -0.64 -22.22 16.01 -3.97 -0.06 -22.29 16 12 N -0.73 -17.92 5.55 -482.29 -2.68 -20.60 16 13 C 0.19 5.45 5.80 85.63 0.50 5.95 16 14 C -0.06 -1.81 5.25 -19.88 -0.10 -1.91 16 15 C -0.17 -4.71 9.70 22.30 0.22 -4.50 16 16 C -0.07 -2.15 10.04 22.25 0.22 -1.92 16 17 C -0.23 -9.53 9.17 22.39 0.21 -9.32 16 18 C 0.11 5.34 6.65 22.58 0.15 5.49 16 19 O -0.23 -13.66 9.76 -22.74 -0.22 -13.88 16 20 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 21 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 22 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 23 N -0.92 -56.09 13.67 21.61 0.30 -55.80 16 24 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 28 C -0.18 -7.39 9.65 22.39 0.22 -7.18 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.35 3.97 9.08 -89.69 -0.81 3.15 16 41 H 0.35 3.69 8.99 -89.69 -0.81 2.88 16 42 H 0.41 5.22 8.62 -92.71 -0.80 4.42 16 43 H 0.41 8.48 8.48 -92.71 -0.79 7.69 16 44 H 0.08 2.18 8.09 -2.38 -0.02 2.16 16 45 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 46 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 47 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 48 H 0.12 5.00 5.64 -2.91 -0.02 4.99 16 49 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -75.53 415.36 -0.85 -76.38 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -2.23 Total: 38.93 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 5.89 Total: -18.23 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -6.26 Total: -104.93 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.29 Total: -36.17 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -75.53 -0.85 -76.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325353984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.672 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds