Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47281 * 2 1 4 4 N 1.46898 * 109.47031 * 120.00503 * 2 1 3 5 5 C 1.46907 * 110.99928 * 274.99727 * 4 2 1 6 6 C 1.50698 * 109.47039 * 180.02562 * 5 4 2 7 7 O 1.21297 * 119.99945 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99970 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00522 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99599 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00478 * 180.02562 * 9 8 6 12 12 N 1.31405 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47290 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47173 * 120.00258 * 13 11 9 16 16 H 1.48501 * 109.47196 * 239.99712 * 13 11 9 17 17 C 1.53001 * 109.46800 * 240.00068 * 2 1 3 18 18 H 1.09002 * 110.88909 * 299.30144 * 17 2 1 19 19 C 1.55154 * 111.00204 * 63.18183 * 17 2 1 20 20 C 1.54327 * 102.94290 * 153.61339 * 19 17 2 21 21 N 1.47029 * 107.26790 * 337.80696 * 20 19 17 22 22 C 1.34773 * 125.64802 * 178.99157 * 21 20 19 23 23 O 1.21608 * 120.00287 * 179.97438 * 22 21 20 24 24 C 1.47114 * 120.00091 * 359.96786 * 22 21 20 25 25 C 1.32988 * 119.99847 * 180.02562 * 24 22 21 26 26 C 1.51406 * 136.32188 * 359.63013 * 25 24 22 27 27 C 1.53379 * 87.51990 * 206.05780 * 26 25 24 28 28 C 1.51408 * 136.31212 * 180.02562 * 25 24 22 29 29 C 1.47418 * 108.70495 * 358.93814 * 21 20 19 30 30 H 1.08996 * 109.47014 * 59.99672 * 1 2 3 31 31 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46851 * 299.99778 * 1 2 3 33 33 H 1.00897 * 111.00378 * 38.95300 * 4 2 1 34 34 H 1.08998 * 109.47112 * 300.00156 * 5 4 2 35 35 H 1.08993 * 109.47001 * 60.00007 * 5 4 2 36 36 H 0.97003 * 120.00128 * 0.02562 * 8 6 5 37 37 H 0.97005 * 120.00621 * 180.02562 * 12 11 9 38 38 H 1.09004 * 110.72212 * 271.97362 * 19 17 2 39 39 H 1.08997 * 110.72125 * 35.07385 * 19 17 2 40 40 H 1.08993 * 109.88730 * 97.22288 * 20 19 17 41 41 H 1.08996 * 109.88624 * 218.24012 * 20 19 17 42 42 H 1.08001 * 119.99787 * 0.02562 * 24 22 21 43 43 H 1.09003 * 113.56056 * 320.64272 * 26 25 24 44 44 H 1.08995 * 113.55878 * 91.37022 * 26 25 24 45 45 H 1.08999 * 113.96592 * 220.28742 * 27 26 25 46 46 H 1.08996 * 113.59403 * 88.79409 * 27 26 25 47 47 H 1.08997 * 113.56371 * 268.62384 * 28 25 24 48 48 H 1.09001 * 113.55945 * 39.36302 * 28 25 24 49 49 H 1.08995 * 110.37279 * 265.29528 * 29 21 20 50 50 H 1.08997 * 110.36990 * 142.96726 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6988 3.4698 8 7 2.7297 0.1205 4.7321 9 6 3.1895 -0.5566 5.8320 10 1 3.4383 -1.6048 5.7557 11 6 3.3346 0.1054 7.0449 12 7 3.0305 1.3804 7.1381 13 14 3.9618 -0.8171 8.5433 14 1 4.2301 -2.2311 8.1775 15 1 5.2153 -0.1836 9.0257 16 1 2.9381 -0.7700 9.6180 17 6 2.0400 -0.7213 -1.2493 18 1 1.6996 -1.7566 -1.2664 19 6 1.6092 0.0272 -2.5383 20 6 2.7003 -0.3753 -3.5527 21 7 3.8809 -0.7916 -2.7817 22 6 5.0425 -1.2349 -3.3019 23 8 5.9564 -1.5530 -2.5654 24 6 5.2048 -1.3341 -4.7607 25 6 6.3509 -1.7720 -5.2739 26 6 7.6838 -2.2436 -4.7324 27 6 8.3059 -1.7986 -6.0619 28 6 6.9075 -2.0147 -6.6609 29 6 3.5841 -0.6427 -1.3454 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4496 -1.4980 1.4099 34 1 2.7589 1.0460 2.1183 35 1 1.0872 0.6162 2.5526 36 1 2.5052 1.0617 4.8009 37 1 3.1321 1.8427 7.9848 38 1 0.6285 -0.3121 -2.8718 39 1 1.6082 1.1051 -2.3763 40 1 2.3478 -1.2038 -4.1671 41 1 2.9497 0.4758 -4.1862 42 1 4.3932 -1.0513 -5.4147 43 1 8.0340 -1.6684 -3.8752 44 1 7.7310 -3.3200 -4.5678 45 1 9.0612 -2.4830 -6.4483 46 1 8.6301 -0.7580 -6.0653 47 1 6.7417 -3.0283 -7.0257 48 1 6.6211 -1.2518 -7.3849 49 1 3.9381 0.3224 -0.9829 50 1 4.0412 -1.4530 -0.7775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325384262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = -31.295909 kcal Electronic energy + Delta-G solvation = -28278.806675 eV Core-core repulsion = 24306.828943 eV Total energy + Delta-G solvation = -3971.977732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27882 -39.09657 -38.34312 -37.62078 -35.84659 -33.88015 -32.27249 -31.21649 -30.97897 -29.68861 -28.68794 -26.30950 -26.07637 -24.60397 -23.99970 -22.71135 -22.10651 -20.35438 -19.89238 -19.16623 -18.02512 -17.83002 -17.29568 -16.53377 -15.92569 -15.76163 -15.52013 -15.22361 -14.79475 -14.70762 -14.47096 -14.27439 -13.95024 -13.80333 -13.45457 -13.22746 -12.92514 -12.81832 -12.75710 -12.44877 -12.30913 -12.13728 -12.05717 -11.94521 -11.55393 -11.54795 -11.34325 -11.30549 -11.05713 -11.04647 -10.89862 -10.78924 -10.68042 -10.31594 -10.19200 -9.74853 -9.48809 -9.45920 -8.64019 -8.42833 -8.01034 -7.92241 -6.38835 -3.79333 1.16059 2.90254 3.18867 3.23305 3.29249 3.36960 3.93239 3.95392 4.07831 4.16896 4.26739 4.37251 4.43713 4.54591 4.73433 4.78762 4.86356 4.97805 5.13706 5.17281 5.18880 5.21805 5.28657 5.30108 5.34110 5.36421 5.40375 5.44404 5.49337 5.62244 5.65563 5.68348 5.75323 5.80257 5.87080 5.89755 5.95786 6.01328 6.09607 6.16092 6.19460 6.28023 6.32573 6.41935 7.25477 7.49490 7.58527 7.69482 8.10014 8.18294 8.64656 9.21395 9.57858 10.09487 10.79051 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.002068 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.234360 B =13533.733711 C =15217.719034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 H 0.079 0.921 4 N -0.663 5.663 5 C 0.052 3.948 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.085 4.085 18 H 0.085 0.915 19 C -0.128 4.128 20 C 0.102 3.898 21 N -0.619 5.619 22 C 0.562 3.438 23 O -0.537 6.537 24 C -0.195 4.195 25 C -0.064 4.064 26 C -0.107 4.107 27 C -0.143 4.143 28 C -0.108 4.108 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.351 0.649 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 0.121 -28.722 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 H 0.098 0.902 4 N -0.295 5.295 5 C -0.081 4.081 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.105 4.105 18 H 0.103 0.897 19 C -0.166 4.166 20 C -0.021 4.021 21 N -0.354 5.354 22 C 0.353 3.647 23 O -0.415 6.415 24 C -0.216 4.216 25 C -0.066 4.066 26 C -0.144 4.144 27 C -0.180 4.180 28 C -0.144 4.144 29 C 0.001 3.999 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.345 -0.673 -28.389 28.399 hybrid contribution -1.033 0.509 1.020 1.539 sum -1.378 -0.164 -27.368 27.403 Atomic orbital electron populations 1.22529 0.97134 1.02334 1.02212 1.21508 0.92439 0.97751 0.90001 0.90241 1.60148 1.57707 1.09130 1.02523 1.21687 0.99818 0.95699 0.90890 1.19831 0.85082 0.88253 0.84180 1.90533 1.55174 1.16288 1.84587 1.41870 1.57886 1.12447 1.07986 1.19757 1.39752 0.96453 0.86731 0.87881 1.25257 0.97734 0.95793 0.99260 1.69618 1.48883 1.08866 1.27048 0.85802 0.78227 0.79667 0.80669 1.19215 1.20748 1.20822 1.22310 0.94695 1.00260 0.93210 0.89658 1.22716 0.97983 1.01192 0.94714 1.22012 0.85802 0.99454 0.94846 1.48429 1.13320 1.65177 1.08428 1.18062 0.81053 0.77227 0.88325 1.90811 1.39522 1.49441 1.61774 1.21582 0.97324 1.08909 0.93783 1.23492 0.93244 0.91678 0.98187 1.22236 0.91906 1.02053 0.98187 1.22731 0.96029 1.02223 0.97032 1.22346 0.95471 1.02733 0.93900 1.22151 0.94734 1.02865 0.80104 0.92069 0.92284 0.92377 0.82960 0.89696 0.93876 0.77505 0.91976 0.89967 0.90342 0.91528 0.91544 0.85225 0.89389 0.88354 0.90361 0.89738 0.88129 0.90460 0.91498 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.98 37.16 0.33 -1.39 16 2 C 0.09 1.06 2.10 -67.71 -0.14 0.91 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 4 N -0.66 -10.34 5.65 -107.99 -0.61 -10.95 16 5 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 6 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 7 O -0.58 -16.06 15.78 5.54 0.09 -15.98 16 8 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 9 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 10 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 13 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.08 -0.88 2.77 -88.47 -0.25 -1.12 16 18 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.13 -0.92 5.44 -24.90 -0.14 -1.06 16 20 C 0.10 0.80 6.06 -3.06 -0.02 0.78 16 21 N -0.62 -7.41 3.33 -171.91 -0.57 -7.98 16 22 C 0.56 7.75 7.80 -12.66 -0.10 7.65 16 23 O -0.54 -9.58 15.41 5.27 0.08 -9.50 16 24 C -0.20 -1.99 9.54 -37.80 -0.36 -2.35 16 25 C -0.06 -0.61 6.93 -100.48 -0.70 -1.31 16 26 C -0.11 -1.04 6.99 -27.56 -0.19 -1.23 16 27 C -0.14 -0.97 8.17 -26.20 -0.21 -1.18 16 28 C -0.11 -0.68 7.95 -27.41 -0.22 -0.90 16 29 C 0.12 1.64 6.16 -2.53 -0.02 1.62 16 30 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 33 H 0.35 5.72 8.17 -39.29 -0.32 5.40 16 34 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.04 0.67 7.44 -51.93 -0.39 0.29 16 36 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 39 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 0.95 7.38 -52.49 -0.39 0.57 16 43 H 0.09 1.05 7.49 -51.93 -0.39 0.66 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 50 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -34.40 407.24 -9.98 -44.38 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -8.39 Total: 12.58 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.36 Total: 3.63 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.52 Total: -57.66 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.17 Total: -25.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.40 -9.98 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325384262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.082 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds