Wall clock time and date at job start Tue Mar 31 2020 19:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47281 * 2 1 4 4 N 1.46898 * 109.47031 * 120.00503 * 2 1 3 5 5 C 1.46907 * 110.99928 * 274.99727 * 4 2 1 6 6 C 1.50698 * 109.47039 * 180.02562 * 5 4 2 7 7 O 1.21297 * 119.99945 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99970 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00522 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99599 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00478 * 180.02562 * 9 8 6 12 12 N 1.31405 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47290 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47173 * 120.00258 * 13 11 9 16 16 H 1.48501 * 109.47196 * 239.99712 * 13 11 9 17 17 C 1.53001 * 109.46800 * 240.00068 * 2 1 3 18 18 H 1.09002 * 110.88909 * 299.30144 * 17 2 1 19 19 C 1.55154 * 111.00204 * 63.18183 * 17 2 1 20 20 C 1.54327 * 102.94290 * 153.61339 * 19 17 2 21 21 N 1.47029 * 107.26790 * 337.80696 * 20 19 17 22 22 C 1.34773 * 125.64802 * 178.99157 * 21 20 19 23 23 O 1.21608 * 120.00287 * 179.97438 * 22 21 20 24 24 C 1.47114 * 120.00091 * 359.96786 * 22 21 20 25 25 C 1.32988 * 119.99847 * 180.02562 * 24 22 21 26 26 C 1.51406 * 136.32188 * 359.63013 * 25 24 22 27 27 C 1.53379 * 87.51990 * 206.05780 * 26 25 24 28 28 C 1.51408 * 136.31212 * 180.02562 * 25 24 22 29 29 C 1.47418 * 108.70495 * 358.93814 * 21 20 19 30 30 H 1.08996 * 109.47014 * 59.99672 * 1 2 3 31 31 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46851 * 299.99778 * 1 2 3 33 33 H 1.00897 * 111.00378 * 38.95300 * 4 2 1 34 34 H 1.08998 * 109.47112 * 300.00156 * 5 4 2 35 35 H 1.08993 * 109.47001 * 60.00007 * 5 4 2 36 36 H 0.97003 * 120.00128 * 0.02562 * 8 6 5 37 37 H 0.97005 * 120.00621 * 180.02562 * 12 11 9 38 38 H 1.09004 * 110.72212 * 271.97362 * 19 17 2 39 39 H 1.08997 * 110.72125 * 35.07385 * 19 17 2 40 40 H 1.08993 * 109.88730 * 97.22288 * 20 19 17 41 41 H 1.08996 * 109.88624 * 218.24012 * 20 19 17 42 42 H 1.08001 * 119.99787 * 0.02562 * 24 22 21 43 43 H 1.09003 * 113.56056 * 320.64272 * 26 25 24 44 44 H 1.08995 * 113.55878 * 91.37022 * 26 25 24 45 45 H 1.08999 * 113.96592 * 220.28742 * 27 26 25 46 46 H 1.08996 * 113.59403 * 88.79409 * 27 26 25 47 47 H 1.08997 * 113.56371 * 268.62384 * 28 25 24 48 48 H 1.09001 * 113.55945 * 39.36302 * 28 25 24 49 49 H 1.08995 * 110.37279 * 265.29528 * 29 21 20 50 50 H 1.08997 * 110.36990 * 142.96726 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6988 3.4698 8 7 2.7297 0.1205 4.7321 9 6 3.1895 -0.5566 5.8320 10 1 3.4383 -1.6048 5.7557 11 6 3.3346 0.1054 7.0449 12 7 3.0305 1.3804 7.1381 13 14 3.9618 -0.8171 8.5433 14 1 4.2301 -2.2311 8.1775 15 1 5.2153 -0.1836 9.0257 16 1 2.9381 -0.7700 9.6180 17 6 2.0400 -0.7213 -1.2493 18 1 1.6996 -1.7566 -1.2664 19 6 1.6092 0.0272 -2.5383 20 6 2.7003 -0.3753 -3.5527 21 7 3.8809 -0.7916 -2.7817 22 6 5.0425 -1.2349 -3.3019 23 8 5.9564 -1.5530 -2.5654 24 6 5.2048 -1.3341 -4.7607 25 6 6.3509 -1.7720 -5.2739 26 6 7.6838 -2.2436 -4.7324 27 6 8.3059 -1.7986 -6.0619 28 6 6.9075 -2.0147 -6.6609 29 6 3.5841 -0.6427 -1.3454 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4496 -1.4980 1.4099 34 1 2.7589 1.0460 2.1183 35 1 1.0872 0.6162 2.5526 36 1 2.5052 1.0617 4.8009 37 1 3.1321 1.8427 7.9848 38 1 0.6285 -0.3121 -2.8718 39 1 1.6082 1.1051 -2.3763 40 1 2.3478 -1.2038 -4.1671 41 1 2.9497 0.4758 -4.1862 42 1 4.3932 -1.0513 -5.4147 43 1 8.0340 -1.6684 -3.8752 44 1 7.7310 -3.3200 -4.5678 45 1 9.0612 -2.4830 -6.4483 46 1 8.6301 -0.7580 -6.0653 47 1 6.7417 -3.0283 -7.0257 48 1 6.6211 -1.2518 -7.3849 49 1 3.9381 0.3224 -0.9829 50 1 4.0412 -1.4530 -0.7775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325384262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:27 Heat of formation + Delta-G solvation = -55.682370 kcal Electronic energy + Delta-G solvation = -28279.864151 eV Core-core repulsion = 24306.828943 eV Total energy + Delta-G solvation = -3973.035208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21212 -40.25662 -39.68934 -38.71264 -37.01640 -35.92408 -33.46968 -33.15974 -31.85483 -30.60854 -29.54520 -27.94310 -26.70155 -25.89784 -25.29008 -23.40607 -23.01775 -21.43410 -20.88391 -20.72549 -19.91913 -18.77344 -18.22287 -17.88655 -17.11757 -16.87212 -16.45311 -16.34558 -16.30401 -16.04032 -15.60382 -15.51250 -15.25542 -15.07965 -14.52247 -14.36290 -14.18192 -13.86662 -13.57250 -13.54405 -13.36298 -13.29235 -13.13510 -12.92905 -12.87223 -12.68514 -12.62751 -12.43324 -12.19479 -12.13426 -11.95164 -11.85547 -11.83945 -11.53627 -11.49718 -11.48514 -10.72806 -10.35996 -10.24788 -10.03162 -9.57859 -9.24693 -8.48785 -5.97428 0.34477 1.34499 1.39499 1.53993 2.00961 2.03857 2.27518 2.27607 2.89056 3.18339 3.27699 3.46995 3.55603 3.65500 3.73585 3.81304 3.92123 4.14031 4.23904 4.26749 4.32355 4.38785 4.42030 4.43684 4.47415 4.58490 4.60805 4.63534 4.72387 4.75156 4.82112 4.89212 4.90469 4.95714 5.01678 5.02165 5.05044 5.15923 5.20986 5.29558 5.33443 5.37908 5.39222 5.45777 5.66781 5.91133 6.14842 6.45128 6.57774 6.58644 7.11060 7.17550 7.54628 8.10596 8.68853 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.002068 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.234360 B =13533.733711 C =15217.719034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.086 0.914 4 N -0.683 5.683 5 C 0.069 3.931 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.574 5.574 9 C -0.334 4.334 10 H 0.076 0.924 11 C -0.014 4.014 12 N -0.919 5.919 13 Si 0.993 3.007 14 H -0.275 1.275 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.076 4.076 18 H 0.079 0.921 19 C -0.115 4.115 20 C 0.095 3.905 21 N -0.620 5.620 22 C 0.546 3.454 23 O -0.598 6.598 24 C -0.204 4.204 25 C -0.072 4.072 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.089 4.089 29 C 0.122 3.878 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.344 0.656 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.166 0.834 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.119 0.881 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 1.327 -31.610 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.104 0.896 4 N -0.315 5.315 5 C -0.063 4.063 6 C 0.224 3.776 7 O -0.512 6.512 8 N -0.211 5.211 9 C -0.464 4.464 10 H 0.094 0.906 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.817 3.183 14 H -0.200 1.200 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.096 4.096 18 H 0.097 0.903 19 C -0.153 4.153 20 C -0.026 4.026 21 N -0.352 5.352 22 C 0.339 3.661 23 O -0.481 6.481 24 C -0.224 4.224 25 C -0.074 4.074 26 C -0.163 4.163 27 C -0.171 4.171 28 C -0.126 4.126 29 C -0.001 4.001 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.183 0.817 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.137 0.863 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.183 0.588 -31.316 31.397 hybrid contribution -0.427 0.115 1.918 1.969 sum -2.610 0.703 -29.397 29.521 Atomic orbital electron populations 1.22442 0.94918 1.02673 1.03345 1.21615 0.94095 0.97572 0.88124 0.89561 1.60141 1.58927 1.09263 1.03185 1.21513 1.01022 0.95197 0.88605 1.20993 0.83363 0.88031 0.85261 1.90498 1.56659 1.18537 1.85482 1.41936 1.58356 1.12601 1.08219 1.19686 1.42185 0.95886 0.88608 0.90581 1.26038 0.97242 0.96675 1.01371 1.69671 1.48632 1.09623 1.28110 0.84874 0.78241 0.77940 0.77288 1.20023 1.19612 1.19285 1.22223 0.92036 1.00581 0.94792 0.90302 1.22752 0.99005 1.01529 0.91991 1.22360 0.84147 1.01114 0.95002 1.48573 1.14163 1.64231 1.08239 1.18876 0.80769 0.76502 0.89903 1.90775 1.41637 1.52273 1.63415 1.21664 0.98890 1.10203 0.91628 1.23982 0.92580 0.90301 1.00511 1.22369 0.93545 1.01657 0.98700 1.22726 0.97104 1.02595 0.94643 1.22357 0.93726 1.04409 0.92080 1.22007 0.96937 1.00214 0.80935 0.89090 0.92378 0.93018 0.83703 0.88301 0.91209 0.76942 0.91265 0.86999 0.89024 0.89501 0.89238 0.81693 0.92908 0.88438 0.88555 0.89675 0.86258 0.88260 0.92672 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.98 71.98 0.65 -2.15 16 2 C 0.10 2.02 2.10 44.92 0.09 2.11 16 3 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 4 N -0.68 -21.62 5.65 -495.58 -2.80 -24.42 16 5 C 0.07 2.40 5.97 85.55 0.51 2.91 16 6 C 0.44 21.53 7.82 87.66 0.69 22.22 16 7 O -0.63 -36.28 15.78 -3.08 -0.05 -36.33 16 8 N -0.57 -30.42 5.29 -306.99 -1.62 -32.04 16 9 C -0.33 -19.64 9.68 84.04 0.81 -18.82 16 10 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 11 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 12 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 13 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 C -0.08 -1.50 2.77 -9.40 -0.03 -1.53 16 18 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 19 C -0.11 -1.23 5.44 31.78 0.17 -1.06 16 20 C 0.10 1.20 6.06 86.73 0.53 1.73 16 21 N -0.62 -14.90 3.33 -816.06 -2.71 -17.61 16 22 C 0.55 15.76 7.80 86.57 0.67 16.44 16 23 O -0.60 -23.50 15.41 -4.06 -0.06 -23.56 16 24 C -0.20 -3.97 9.54 23.43 0.22 -3.74 16 25 C -0.07 -1.32 6.93 -17.17 -0.12 -1.44 16 26 C -0.13 -2.56 6.99 30.06 0.21 -2.35 16 27 C -0.13 -1.62 8.17 30.94 0.25 -1.37 16 28 C -0.09 -0.87 7.95 30.15 0.24 -0.63 16 29 C 0.12 3.42 6.16 86.86 0.54 3.95 16 30 H 0.09 0.94 7.38 -2.39 -0.02 0.93 16 31 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 33 H 0.34 11.53 8.17 -89.70 -0.73 10.80 16 34 H 0.10 3.19 8.06 -2.39 -0.02 3.17 16 35 H 0.07 2.08 7.44 -2.39 -0.02 2.06 16 36 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 37 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 38 H 0.11 0.64 8.12 -2.39 -0.02 0.62 16 39 H 0.09 0.81 8.04 -2.39 -0.02 0.79 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.17 1.89 7.38 -2.91 -0.02 1.87 16 43 H 0.05 1.43 7.49 -2.39 -0.02 1.41 16 44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 49 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 50 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -81.81 407.24 0.45 -81.36 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.52 Total: 40.63 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.91 Total: 15.98 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -6.85 Total: -124.38 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.11 Total: -59.89 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -81.81 0.45 -81.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325384262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.680 kcal (2) G-P(sol) polarization free energy of solvation -81.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds