Wall clock time and date at job start Tue Mar 31 2020 19:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 N 1.46896 * 109.47017 * 119.99971 * 2 1 3 5 5 C 1.46901 * 111.00226 * 274.99750 * 4 2 1 6 6 C 1.50698 * 109.47351 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00366 * 180.02562 * 6 5 4 9 9 C 1.37088 * 120.00090 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00056 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99899 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99962 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99885 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46930 * 90.00361 * 13 11 9 15 15 H 1.48498 * 109.47230 * 210.00119 * 13 11 9 16 16 H 1.48499 * 109.47338 * 330.00271 * 13 11 9 17 17 C 1.52994 * 109.47274 * 240.00343 * 2 1 3 18 18 H 1.09006 * 110.88626 * 305.47257 * 17 2 1 19 19 C 1.55163 * 111.00664 * 181.59026 * 17 2 1 20 20 C 1.54317 * 102.94284 * 206.42207 * 19 17 2 21 21 N 1.47027 * 107.27619 * 22.19282 * 20 19 17 22 22 C 1.34770 * 125.65233 * 181.02013 * 21 20 19 23 23 O 1.21617 * 120.00013 * 180.02562 * 22 21 20 24 24 C 1.47104 * 120.00053 * 0.02682 * 22 21 20 25 25 C 1.32987 * 120.00103 * 179.97438 * 24 22 21 26 26 C 1.51584 * 135.78198 * 179.97438 * 25 24 22 27 27 C 1.53840 * 86.75396 * 205.13696 * 26 25 24 28 28 C 1.51580 * 135.78365 * 359.97438 * 25 24 22 29 29 C 1.47424 * 108.69791 * 1.28545 * 21 20 19 30 30 H 1.09004 * 109.47647 * 55.26418 * 1 2 3 31 31 H 1.09007 * 109.47322 * 175.25875 * 1 2 3 32 32 H 1.09006 * 109.47596 * 295.26132 * 1 2 3 33 33 H 1.00895 * 111.00264 * 38.95903 * 4 2 1 34 34 H 1.08996 * 109.47251 * 300.00239 * 5 4 2 35 35 H 1.09006 * 109.46463 * 60.00400 * 5 4 2 36 36 H 0.96998 * 119.99181 * 0.02562 * 8 6 5 37 37 H 0.96999 * 120.00412 * 179.97438 * 12 11 9 38 38 H 1.09006 * 110.71637 * 88.05596 * 19 17 2 39 39 H 1.08994 * 110.87111 * 324.86053 * 19 17 2 40 40 H 1.09003 * 109.88808 * 262.77577 * 20 19 17 41 41 H 1.09004 * 109.88371 * 141.61368 * 20 19 17 42 42 H 1.07998 * 120.00040 * 0.02562 * 24 22 21 43 43 H 1.08999 * 113.66626 * 90.67535 * 26 25 24 44 44 H 1.08998 * 113.66603 * 319.59974 * 26 25 24 45 45 H 1.08995 * 113.65994 * 89.69171 * 27 26 25 46 46 H 1.09001 * 113.65603 * 220.72729 * 27 26 25 47 47 H 1.08999 * 113.66723 * 40.39232 * 28 25 24 48 48 H 1.09006 * 113.66337 * 269.32782 * 28 25 24 49 49 H 1.09001 * 110.36969 * 94.48311 * 29 21 20 50 50 H 1.09001 * 110.36847 * 216.80913 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0195 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5215 3.5557 7 8 2.8695 -1.6983 3.4697 8 7 2.7286 0.1205 4.7324 9 6 3.1895 -0.5563 5.8319 10 1 3.4398 -1.6041 5.7553 11 6 3.3335 0.1056 7.0452 12 7 3.7757 -0.5431 8.0990 13 14 2.8999 1.9176 7.1778 14 1 1.4702 2.0582 7.5544 15 1 3.7499 2.5554 8.2150 16 1 3.1346 2.5799 5.8696 17 6 2.0399 -0.7211 -1.2492 18 1 1.6123 -1.7211 -1.3225 19 6 3.5905 -0.7768 -1.2653 20 6 3.9175 -0.8682 -2.7706 21 7 2.7592 -0.3347 -3.5023 22 6 2.6438 -0.2590 -4.8429 23 8 1.6354 0.2035 -5.3413 24 6 3.7374 -0.7358 -5.7034 25 6 3.6234 -0.6616 -7.0263 26 6 4.4903 -1.0303 -8.2138 27 6 3.7194 0.0449 -8.9991 28 6 2.5701 -0.1717 -8.0001 29 6 1.7475 0.1096 -2.5263 30 1 -0.3634 0.5856 -0.8445 31 1 -0.3634 -1.0242 -0.0849 32 1 -0.3634 0.4386 0.9294 33 1 1.4495 -1.4979 1.4100 34 1 2.7588 1.0462 2.1182 35 1 1.0869 0.6163 2.5525 36 1 2.5034 1.0615 4.8012 37 1 3.8766 -0.0811 8.9459 38 1 3.9501 -1.6605 -0.7380 39 1 4.0160 0.1285 -0.8324 40 1 4.0861 -1.9080 -3.0510 41 1 4.8033 -0.2736 -2.9943 42 1 4.6327 -1.1469 -5.2608 43 1 4.3232 -2.0433 -8.5798 44 1 5.5459 -0.7974 -8.0740 45 1 4.1689 1.0361 -8.9402 46 1 3.4740 -0.2504 -10.0192 47 1 2.0816 0.7515 -7.6884 48 1 1.8641 -0.9438 -8.3059 49 1 1.8589 1.1746 -2.3226 50 1 0.7445 -0.1039 -2.8957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325384263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:31 Heat of formation + Delta-G solvation = -26.052564 kcal Electronic energy + Delta-G solvation = -28115.097688 eV Core-core repulsion = 24143.347325 eV Total energy + Delta-G solvation = -3971.750363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.39208 -39.14001 -38.52810 -37.73124 -35.96189 -33.97290 -32.29698 -31.66255 -30.95685 -30.33542 -28.25891 -26.59728 -26.23066 -24.87727 -23.74679 -22.74562 -21.99827 -20.45173 -20.03488 -19.35552 -18.36612 -18.07525 -17.42163 -16.61420 -15.94307 -15.86135 -15.64291 -15.35686 -14.91618 -14.85735 -14.77767 -14.26096 -13.84094 -13.80780 -13.37187 -13.22581 -13.04343 -12.88479 -12.80819 -12.69732 -12.45773 -12.30507 -12.23651 -12.07248 -12.03044 -11.71030 -11.38727 -11.30336 -11.18664 -11.00063 -10.98606 -10.87112 -10.69754 -10.60622 -9.98698 -9.92139 -9.58249 -9.55770 -8.79416 -8.60123 -8.20446 -8.12970 -6.32154 -3.83579 1.04948 2.75933 3.01605 3.05589 3.08422 3.14188 3.73391 3.88616 3.97418 4.06835 4.09283 4.32534 4.46314 4.49505 4.66781 4.70159 4.78554 4.97514 5.01477 5.09703 5.11094 5.13926 5.20456 5.21090 5.22607 5.29022 5.38268 5.40395 5.42830 5.56617 5.57050 5.63714 5.66254 5.73334 5.78151 5.79597 5.84132 5.88450 5.95130 6.03470 6.06611 6.16487 6.24013 6.30201 7.09863 7.33933 7.56330 7.58174 8.00761 8.13584 8.58761 8.94069 9.41546 9.81872 10.80979 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029588 B = 0.001721 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.090112 B =16266.958421 C =16536.404595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.094 3.906 3 H 0.079 0.921 4 N -0.661 5.661 5 C 0.049 3.951 6 C 0.450 3.550 7 O -0.565 6.565 8 N -0.591 5.591 9 C -0.305 4.305 10 H 0.119 0.881 11 C 0.042 3.958 12 N -0.881 5.881 13 Si 0.879 3.121 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.269 1.269 17 C -0.086 4.086 18 H 0.085 0.915 19 C -0.111 4.111 20 C 0.096 3.904 21 N -0.615 5.615 22 C 0.565 3.435 23 O -0.547 6.547 24 C -0.197 4.197 25 C -0.062 4.062 26 C -0.109 4.109 27 C -0.142 4.142 28 C -0.106 4.106 29 C 0.113 3.887 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 3.644 -29.926 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.017 4.017 3 H 0.098 0.902 4 N -0.292 5.292 5 C -0.084 4.084 6 C 0.236 3.764 7 O -0.446 6.446 8 N -0.231 5.231 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.106 4.106 18 H 0.104 0.896 19 C -0.149 4.149 20 C -0.027 4.027 21 N -0.349 5.349 22 C 0.357 3.643 23 O -0.426 6.426 24 C -0.218 4.218 25 C -0.064 4.064 26 C -0.146 4.146 27 C -0.180 4.180 28 C -0.142 4.142 29 C -0.010 4.010 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.150 0.850 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.086 0.914 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.093 3.164 -30.237 30.422 hybrid contribution -1.069 1.570 0.760 2.046 sum -2.162 4.734 -29.477 29.933 Atomic orbital electron populations 1.22572 0.97224 1.02510 1.02268 1.21482 0.92408 0.97729 0.90038 0.90239 1.60110 1.57780 1.09068 1.02270 1.21727 0.99913 0.95825 0.90961 1.19722 0.84717 0.88254 0.83731 1.90565 1.53817 1.16032 1.84236 1.42212 1.60160 1.11089 1.09593 1.19430 1.40311 0.97966 0.85689 0.86291 1.25036 0.97472 0.98374 0.95256 1.69619 1.45068 1.36612 1.00835 0.86675 0.79260 0.84978 0.78486 1.19687 1.20177 1.19482 1.22356 0.96379 0.99463 0.92410 0.89647 1.22510 0.95197 1.04459 0.92694 1.22217 0.88541 0.98901 0.93064 1.48371 1.19519 1.62194 1.04798 1.18078 0.87165 0.78555 0.80517 1.90767 1.31484 1.46731 1.73646 1.21625 1.00223 1.07699 0.92263 1.23637 0.98077 0.91802 0.92865 1.22410 0.99035 1.00107 0.93048 1.22838 0.97353 0.99232 0.98538 1.22326 0.95960 1.02551 0.93398 1.22291 0.92574 0.98353 0.87769 0.92052 0.92137 0.92374 0.82812 0.89573 0.93765 0.79720 0.91619 0.88920 0.90402 0.91329 0.91446 0.85014 0.88052 0.90174 0.89783 0.90495 0.89410 0.88405 0.91438 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 9.00 37.15 0.33 -1.43 16 2 C 0.09 0.98 2.13 -67.72 -0.14 0.84 16 3 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 4 N -0.66 -9.18 5.49 -108.00 -0.59 -9.77 16 5 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 6 C 0.45 9.87 7.82 -10.98 -0.09 9.78 16 7 O -0.56 -14.72 15.78 5.55 0.09 -14.63 16 8 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 9 C -0.31 -8.54 10.16 -14.94 -0.15 -8.69 16 10 H 0.12 3.81 7.39 -52.48 -0.39 3.43 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 13 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 17 C -0.09 -0.84 2.76 -88.35 -0.24 -1.09 16 18 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.11 -1.07 6.05 -24.90 -0.15 -1.22 16 20 C 0.10 0.82 6.06 -3.06 -0.02 0.80 16 21 N -0.62 -6.51 3.32 -171.76 -0.57 -7.08 16 22 C 0.57 6.79 7.80 -12.67 -0.10 6.69 16 23 O -0.55 -8.19 15.36 5.26 0.08 -8.11 16 24 C -0.20 -1.84 9.54 -37.81 -0.36 -2.20 16 25 C -0.06 -0.52 6.87 -100.39 -0.69 -1.21 16 26 C -0.11 -0.61 8.05 -27.01 -0.22 -0.82 16 27 C -0.14 -0.80 8.11 -25.96 -0.21 -1.01 16 28 C -0.11 -0.85 7.05 -27.03 -0.19 -1.05 16 29 C 0.11 1.14 5.78 -2.41 -0.01 1.13 16 30 H 0.06 0.52 7.76 -51.93 -0.40 0.12 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.06 0.58 7.36 -51.93 -0.38 0.19 16 33 H 0.35 5.23 8.18 -39.29 -0.32 4.90 16 34 H 0.09 1.20 8.05 -51.93 -0.42 0.79 16 35 H 0.04 0.61 7.37 -51.93 -0.38 0.22 16 36 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.13 0.94 7.38 -52.49 -0.39 0.56 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.87 7.48 -51.93 -0.39 0.48 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.67 7.96 -51.93 -0.41 0.25 16 50 H 0.08 0.83 8.03 -51.93 -0.42 0.42 16 LS Contribution 404.32 15.07 6.09 6.09 Total: -1.00 -33.80 404.32 -9.62 -43.41 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.35 Total: 12.01 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -2.37 Total: 2.27 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.44 Total: -55.50 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.80 -9.62 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325384263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.360 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds