Wall clock time and date at job start Tue Mar 31 2020 19:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 N 1.46896 * 109.47017 * 119.99971 * 2 1 3 5 5 C 1.46901 * 111.00226 * 274.99750 * 4 2 1 6 6 C 1.50698 * 109.47351 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00366 * 180.02562 * 6 5 4 9 9 C 1.37088 * 120.00090 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00056 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99899 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99962 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99885 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46930 * 90.00361 * 13 11 9 15 15 H 1.48498 * 109.47230 * 210.00119 * 13 11 9 16 16 H 1.48499 * 109.47338 * 330.00271 * 13 11 9 17 17 C 1.52994 * 109.47274 * 240.00343 * 2 1 3 18 18 H 1.09006 * 110.88626 * 305.47257 * 17 2 1 19 19 C 1.55163 * 111.00664 * 181.59026 * 17 2 1 20 20 C 1.54317 * 102.94284 * 206.42207 * 19 17 2 21 21 N 1.47027 * 107.27619 * 22.19282 * 20 19 17 22 22 C 1.34770 * 125.65233 * 181.02013 * 21 20 19 23 23 O 1.21617 * 120.00013 * 180.02562 * 22 21 20 24 24 C 1.47104 * 120.00053 * 0.02682 * 22 21 20 25 25 C 1.32987 * 120.00103 * 179.97438 * 24 22 21 26 26 C 1.51584 * 135.78198 * 179.97438 * 25 24 22 27 27 C 1.53840 * 86.75396 * 205.13696 * 26 25 24 28 28 C 1.51580 * 135.78365 * 359.97438 * 25 24 22 29 29 C 1.47424 * 108.69791 * 1.28545 * 21 20 19 30 30 H 1.09004 * 109.47647 * 55.26418 * 1 2 3 31 31 H 1.09007 * 109.47322 * 175.25875 * 1 2 3 32 32 H 1.09006 * 109.47596 * 295.26132 * 1 2 3 33 33 H 1.00895 * 111.00264 * 38.95903 * 4 2 1 34 34 H 1.08996 * 109.47251 * 300.00239 * 5 4 2 35 35 H 1.09006 * 109.46463 * 60.00400 * 5 4 2 36 36 H 0.96998 * 119.99181 * 0.02562 * 8 6 5 37 37 H 0.96999 * 120.00412 * 179.97438 * 12 11 9 38 38 H 1.09006 * 110.71637 * 88.05596 * 19 17 2 39 39 H 1.08994 * 110.87111 * 324.86053 * 19 17 2 40 40 H 1.09003 * 109.88808 * 262.77577 * 20 19 17 41 41 H 1.09004 * 109.88371 * 141.61368 * 20 19 17 42 42 H 1.07998 * 120.00040 * 0.02562 * 24 22 21 43 43 H 1.08999 * 113.66626 * 90.67535 * 26 25 24 44 44 H 1.08998 * 113.66603 * 319.59974 * 26 25 24 45 45 H 1.08995 * 113.65994 * 89.69171 * 27 26 25 46 46 H 1.09001 * 113.65603 * 220.72729 * 27 26 25 47 47 H 1.08999 * 113.66723 * 40.39232 * 28 25 24 48 48 H 1.09006 * 113.66337 * 269.32782 * 28 25 24 49 49 H 1.09001 * 110.36969 * 94.48311 * 29 21 20 50 50 H 1.09001 * 110.36847 * 216.80913 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0195 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5215 3.5557 7 8 2.8695 -1.6983 3.4697 8 7 2.7286 0.1205 4.7324 9 6 3.1895 -0.5563 5.8319 10 1 3.4398 -1.6041 5.7553 11 6 3.3335 0.1056 7.0452 12 7 3.7757 -0.5431 8.0990 13 14 2.8999 1.9176 7.1778 14 1 1.4702 2.0582 7.5544 15 1 3.7499 2.5554 8.2150 16 1 3.1346 2.5799 5.8696 17 6 2.0399 -0.7211 -1.2492 18 1 1.6123 -1.7211 -1.3225 19 6 3.5905 -0.7768 -1.2653 20 6 3.9175 -0.8682 -2.7706 21 7 2.7592 -0.3347 -3.5023 22 6 2.6438 -0.2590 -4.8429 23 8 1.6354 0.2035 -5.3413 24 6 3.7374 -0.7358 -5.7034 25 6 3.6234 -0.6616 -7.0263 26 6 4.4903 -1.0303 -8.2138 27 6 3.7194 0.0449 -8.9991 28 6 2.5701 -0.1717 -8.0001 29 6 1.7475 0.1096 -2.5263 30 1 -0.3634 0.5856 -0.8445 31 1 -0.3634 -1.0242 -0.0849 32 1 -0.3634 0.4386 0.9294 33 1 1.4495 -1.4979 1.4100 34 1 2.7588 1.0462 2.1182 35 1 1.0869 0.6163 2.5525 36 1 2.5034 1.0615 4.8012 37 1 3.8766 -0.0811 8.9459 38 1 3.9501 -1.6605 -0.7380 39 1 4.0160 0.1285 -0.8324 40 1 4.0861 -1.9080 -3.0510 41 1 4.8033 -0.2736 -2.9943 42 1 4.6327 -1.1469 -5.2608 43 1 4.3232 -2.0433 -8.5798 44 1 5.5459 -0.7974 -8.0740 45 1 4.1689 1.0361 -8.9402 46 1 3.4740 -0.2504 -10.0192 47 1 2.0816 0.7515 -7.6884 48 1 1.8641 -0.9438 -8.3059 49 1 1.8589 1.1746 -2.3226 50 1 0.7445 -0.1039 -2.8957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325384263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:30 Heat of formation + Delta-G solvation = -49.856251 kcal Electronic energy + Delta-G solvation = -28116.129894 eV Core-core repulsion = 24143.347325 eV Total energy + Delta-G solvation = -3972.782569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21941 -40.33459 -39.65392 -38.67012 -37.01495 -35.92147 -33.75143 -33.22121 -31.74645 -31.15607 -29.13690 -28.00929 -26.75177 -26.02577 -25.06318 -23.40876 -22.85077 -21.44363 -21.10756 -20.75527 -20.18957 -18.78005 -18.23742 -17.81860 -17.12590 -16.95379 -16.51885 -16.38272 -16.29822 -15.97590 -15.62435 -15.37769 -14.98041 -14.94124 -14.61240 -14.53163 -14.30858 -13.93020 -13.73753 -13.59237 -13.52759 -13.36348 -13.21505 -12.99420 -12.86318 -12.74441 -12.61390 -12.39897 -12.14357 -11.97954 -11.90668 -11.83456 -11.70037 -11.53341 -11.51399 -11.48551 -10.75464 -10.39831 -10.23903 -10.22699 -9.59788 -9.25208 -8.39697 -6.00252 0.34335 1.31428 1.36490 1.45474 1.97683 1.99253 2.24220 2.26470 2.72898 3.17254 3.24715 3.37820 3.54008 3.67844 3.75588 3.81805 3.92274 4.14658 4.16376 4.26257 4.30856 4.30945 4.37552 4.42427 4.46192 4.56094 4.60016 4.61798 4.71786 4.73578 4.82681 4.85579 4.87885 4.90851 5.02646 5.03531 5.05712 5.13867 5.26930 5.31340 5.34236 5.36014 5.46893 5.54886 5.65963 5.94016 6.10973 6.43306 6.52377 6.61985 6.90587 7.14448 7.42607 7.99531 8.77955 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029588 B = 0.001721 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.090112 B =16266.958421 C =16536.404595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.092 0.908 4 N -0.673 5.673 5 C 0.063 3.937 6 C 0.450 3.550 7 O -0.613 6.613 8 N -0.593 5.593 9 C -0.328 4.328 10 H 0.055 0.945 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.964 3.036 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.230 1.230 17 C -0.078 4.078 18 H 0.079 0.921 19 C -0.108 4.108 20 C 0.098 3.902 21 N -0.617 5.617 22 C 0.555 3.445 23 O -0.588 6.588 24 C -0.213 4.213 25 C -0.067 4.067 26 C -0.097 4.097 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.115 3.885 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.344 0.656 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.389 0.611 37 H 0.278 0.722 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.154 0.846 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.073 0.927 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 6.190 -32.052 32.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.110 0.890 4 N -0.304 5.304 5 C -0.069 4.069 6 C 0.238 3.762 7 O -0.497 6.497 8 N -0.234 5.234 9 C -0.457 4.457 10 H 0.073 0.927 11 C -0.214 4.214 12 N -0.576 5.576 13 Si 0.784 3.216 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.153 1.153 17 C -0.098 4.098 18 H 0.097 0.903 19 C -0.146 4.146 20 C -0.024 4.024 21 N -0.349 5.349 22 C 0.349 3.651 23 O -0.471 6.471 24 C -0.234 4.234 25 C -0.069 4.069 26 C -0.134 4.134 27 C -0.171 4.171 28 C -0.155 4.155 29 C -0.008 4.008 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.171 0.829 43 H 0.136 0.864 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.119 0.881 49 H 0.091 0.909 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.011 5.715 -32.382 32.898 hybrid contribution -1.100 0.633 1.357 1.858 sum -2.110 6.348 -31.024 31.737 Atomic orbital electron populations 1.22520 0.96278 1.02588 1.02768 1.21504 0.93106 0.97908 0.88491 0.88979 1.60098 1.58544 1.09053 1.02728 1.21644 1.01639 0.95451 0.88174 1.21015 0.82373 0.87943 0.84875 1.90546 1.55237 1.18686 1.85235 1.42044 1.60694 1.11840 1.08869 1.19009 1.42348 0.96076 0.88276 0.92655 1.26099 0.96461 1.04895 0.93902 1.69804 1.46400 1.39597 1.01796 0.85377 0.79304 0.76667 0.80246 1.18281 1.20171 1.15350 1.22247 0.96497 0.99035 0.92048 0.90274 1.22452 0.94929 1.03849 0.93355 1.22287 0.88284 0.99826 0.91969 1.48473 1.20071 1.61704 1.04685 1.18610 0.87379 0.78099 0.81048 1.90739 1.33180 1.48794 1.74374 1.21702 1.00294 1.08990 0.92384 1.24106 0.98909 0.90546 0.93375 1.22465 0.99299 1.00815 0.90816 1.22824 0.95799 0.99543 0.98894 1.22422 0.96762 1.01532 0.94752 1.22258 0.92184 0.98652 0.87680 0.90879 0.92492 0.92337 0.83673 0.86861 0.90764 0.77533 0.91217 0.90065 0.90443 0.90248 0.89867 0.82870 0.86394 0.88697 0.89710 0.88726 0.91977 0.88132 0.90875 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.00 71.98 0.65 -2.41 16 2 C 0.10 1.86 2.13 44.91 0.10 1.95 16 3 H 0.09 1.53 7.70 -2.38 -0.02 1.51 16 4 N -0.67 -17.58 5.49 -495.61 -2.72 -20.29 16 5 C 0.06 1.78 5.96 85.56 0.51 2.29 16 6 C 0.45 19.53 7.82 87.66 0.69 20.22 16 7 O -0.61 -32.95 15.78 -3.07 -0.05 -33.00 16 8 N -0.59 -27.28 5.09 -306.98 -1.56 -28.84 16 9 C -0.33 -18.99 10.16 84.04 0.85 -18.14 16 10 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 11 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 12 N -0.94 -56.11 13.96 21.66 0.30 -55.81 16 13 Si 0.96 38.31 27.74 68.60 1.90 40.22 16 14 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 15 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 17 C -0.08 -1.43 2.76 -9.32 -0.03 -1.45 16 18 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 19 C -0.11 -1.93 6.05 31.78 0.19 -1.73 16 20 C 0.10 1.52 6.06 86.73 0.53 2.04 16 21 N -0.62 -12.46 3.32 -815.59 -2.71 -15.18 16 22 C 0.56 13.21 7.80 86.57 0.67 13.88 16 23 O -0.59 -18.06 15.36 -4.09 -0.06 -18.13 16 24 C -0.21 -3.74 9.54 23.43 0.22 -3.52 16 25 C -0.07 -1.06 6.87 -17.11 -0.12 -1.18 16 26 C -0.10 -0.82 8.05 30.41 0.24 -0.58 16 27 C -0.13 -1.25 8.11 31.10 0.25 -1.00 16 28 C -0.12 -1.87 7.05 30.40 0.21 -1.65 16 29 C 0.12 2.21 5.78 86.93 0.50 2.71 16 30 H 0.07 1.07 7.76 -2.38 -0.02 1.05 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 0.99 7.36 -2.38 -0.02 0.97 16 33 H 0.34 9.98 8.18 -89.70 -0.73 9.25 16 34 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 35 H 0.07 1.72 7.37 -2.38 -0.02 1.70 16 36 H 0.39 14.77 5.76 -92.71 -0.53 14.23 16 37 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.08 1.40 8.04 -2.39 -0.02 1.38 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 42 H 0.15 1.88 7.38 -2.91 -0.02 1.86 16 43 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 1.30 7.48 -2.39 -0.02 1.28 16 48 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 50 H 0.07 1.42 8.03 -2.39 -0.02 1.41 16 Total: -1.00 -79.77 404.32 0.67 -79.10 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.38 Total: 40.86 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.95 Total: 11.08 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.69 Total: -120.12 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.11 Total: -51.13 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.22 kcal Total: -79.77 0.67 -79.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325384263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.242 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds