Wall clock time and date at job start Tue Mar 31 2020 19:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.65194 * 359.69707 * 8 6 5 10 10 C 1.54312 * 107.27753 * 180.96391 * 9 8 6 11 11 C 1.55167 * 102.86167 * 22.52322 * 10 9 8 12 12 H 1.09009 * 111.03524 * 82.39200 * 11 10 9 13 13 C 1.52991 * 111.00358 * 206.22564 * 11 10 9 14 14 H 1.08999 * 109.47413 * 52.19757 * 13 11 10 15 15 C 1.53003 * 109.47281 * 172.19664 * 13 11 10 16 16 N 1.46899 * 109.47629 * 292.19608 * 13 11 10 17 17 C 1.46906 * 111.00229 * 154.99740 * 16 13 11 18 18 C 1.50698 * 109.47373 * 180.02562 * 17 16 13 19 19 O 1.21298 * 119.99887 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00234 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00275 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00030 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00217 * 179.97438 * 21 20 18 24 24 N 1.31404 * 119.99969 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99950 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46927 * 90.00200 * 25 23 21 27 27 H 1.48498 * 109.47103 * 210.00037 * 25 23 21 28 28 H 1.48496 * 109.47267 * 330.00235 * 25 23 21 29 29 C 1.47428 * 125.64312 * 179.97438 * 8 6 5 30 30 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 33 33 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 34 34 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 35 35 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 36 36 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 37 37 H 1.09006 * 109.87781 * 300.50814 * 9 8 6 38 38 H 1.08997 * 109.88206 * 61.67076 * 9 8 6 39 39 H 1.08995 * 110.93171 * 264.11300 * 10 9 8 40 40 H 1.08998 * 110.59088 * 140.77927 * 10 9 8 41 41 H 1.09001 * 109.47018 * 300.00908 * 15 13 11 42 42 H 1.08998 * 109.46655 * 60.00257 * 15 13 11 43 43 H 1.08995 * 109.47423 * 180.02562 * 15 13 11 44 44 H 1.00905 * 110.99945 * 31.05293 * 16 13 11 45 45 H 1.09002 * 109.47064 * 300.00671 * 17 16 13 46 46 H 1.08999 * 109.46860 * 60.00291 * 17 16 13 47 47 H 0.96998 * 120.00239 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00311 * 179.97438 * 24 23 21 49 49 H 1.09001 * 110.36714 * 274.67154 * 29 8 6 50 50 H 1.08995 * 110.36830 * 36.88924 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.5734 1.3618 -1.5901 10 6 8.9239 1.8623 -2.1441 11 6 8.5425 3.2037 -2.8243 12 1 8.4918 4.0119 -2.0946 13 6 9.5209 3.5455 -3.9497 14 1 9.6059 2.6964 -4.6277 15 6 9.0070 4.7636 -4.7199 16 7 10.8393 3.8489 -3.3772 17 6 11.9074 3.6022 -4.3552 18 6 13.2420 3.9231 -3.7332 19 8 13.2980 4.3179 -2.5877 20 7 14.3733 3.7714 -4.4497 21 6 15.5875 4.0628 -3.8837 22 1 15.6374 4.4143 -2.8637 23 6 16.7540 3.9058 -4.6223 24 7 16.6933 3.4786 -5.8634 25 14 18.4083 4.3036 -3.8512 26 1 18.9543 3.0877 -3.1962 27 1 19.3483 4.7624 -4.9053 28 1 18.2376 5.3767 -2.8391 29 6 7.1378 2.8769 -3.3901 30 1 -1.0502 -0.0001 0.0004 31 1 3.0092 0.3479 0.9672 32 1 3.0098 -1.0104 -0.1831 33 1 2.7923 0.5859 -2.0681 34 1 2.7917 1.9442 -0.9178 35 1 5.0484 1.2819 -0.1332 36 1 5.0497 -0.0767 -1.2833 37 1 7.4788 1.6325 -0.5385 38 1 7.5062 0.2799 -1.7041 39 1 9.3292 1.1615 -2.8739 40 1 9.6328 2.0291 -1.3331 41 1 8.0287 4.5386 -5.1447 42 1 8.9221 5.6128 -4.0419 43 1 9.7038 5.0069 -5.5220 44 1 10.9957 3.3224 -2.5307 45 1 11.8896 2.5548 -4.6563 46 1 11.7523 4.2342 -5.2296 47 1 14.3286 3.4560 -5.3659 48 1 17.5075 3.3694 -6.3792 49 1 7.2246 2.3443 -4.3372 50 1 6.5578 3.7904 -3.5212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325395979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:56 Heat of formation + Delta-G solvation = -33.778816 kcal Electronic energy + Delta-G solvation = -27726.660185 eV Core-core repulsion = 23754.574787 eV Total energy + Delta-G solvation = -3972.085399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50938 -38.75838 -38.00818 -36.05420 -35.78855 -33.92847 -32.80368 -31.94971 -31.19999 -30.57197 -28.94053 -27.67642 -26.62590 -24.67726 -23.67996 -22.35828 -21.94433 -20.19867 -19.51688 -19.21819 -18.52984 -17.90140 -17.30633 -16.99863 -16.35858 -15.80723 -15.42905 -15.30957 -15.06775 -14.54309 -14.40938 -14.31525 -14.00557 -13.69397 -13.63665 -13.38151 -13.21956 -13.02256 -12.87997 -12.60977 -12.50049 -12.36233 -11.98601 -11.94978 -11.84694 -11.56922 -11.43776 -11.30099 -11.10071 -11.05909 -10.90556 -10.63275 -10.61927 -10.48397 -10.40511 -10.22986 -10.10517 -9.52189 -8.95296 -8.46401 -8.09165 -7.97258 -6.43025 -3.83871 2.34648 2.38928 2.46944 2.68825 3.16650 3.25574 3.31510 3.88600 3.92001 3.97390 4.11908 4.22533 4.27124 4.42569 4.54047 4.62042 4.68424 4.87451 4.94624 5.01992 5.02975 5.05710 5.14132 5.17233 5.20553 5.23394 5.31640 5.32836 5.45453 5.54473 5.57588 5.64525 5.68294 5.70818 5.79486 5.81104 5.84260 5.91272 5.97686 6.03676 6.06555 6.24397 6.37650 7.19533 7.22684 7.24783 7.53904 7.65316 7.86786 8.05091 8.59939 9.16651 9.53123 10.04480 10.74703 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.001539 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.383557 B =18184.882867 C =18652.406859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.541 6.541 8 N -0.620 5.620 9 C 0.102 3.898 10 C -0.135 4.135 11 C -0.101 4.101 12 H 0.096 0.904 13 C 0.096 3.904 14 H 0.045 0.955 15 C -0.144 4.144 16 N -0.662 5.662 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.114 3.886 30 H 0.216 0.784 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.069 0.931 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.727 -8.876 7.098 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.187 4.187 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.418 6.418 8 N -0.355 5.355 9 C -0.021 4.021 10 C -0.173 4.173 11 C -0.121 4.121 12 H 0.115 0.885 13 C -0.015 4.015 14 H 0.062 0.938 15 C -0.202 4.202 16 N -0.296 5.296 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.009 4.009 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.169 0.831 45 H 0.060 0.940 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.061 -7.667 7.231 27.187 hybrid contribution 0.850 -1.062 -0.323 1.398 sum -24.211 -8.729 6.908 26.647 Atomic orbital electron populations 1.24937 0.96040 1.00947 1.00850 1.23085 0.94575 1.00481 1.00512 1.18762 0.84929 1.01101 1.00215 1.21292 0.92852 1.00603 0.99046 1.21664 0.97304 1.00174 0.98486 1.20353 0.80382 0.82555 0.85095 1.90722 1.54283 1.48634 1.48188 1.48570 1.05117 1.46418 1.35405 1.22064 0.86895 0.97378 0.95775 1.22790 0.96097 0.96996 1.01456 1.22561 0.93562 0.97751 0.98184 0.88546 1.21446 0.88908 0.96946 0.94153 0.93758 1.21854 0.99942 0.98154 1.00203 1.60143 0.99426 1.62908 1.07110 1.21719 0.91322 0.99292 0.95837 1.19812 0.84957 0.85017 0.87617 1.90521 1.86797 1.51069 1.18402 1.41861 1.05120 1.58362 1.14658 1.19706 0.82242 1.41506 0.99508 0.87925 1.25254 0.99891 0.97220 0.95500 1.69606 1.29723 1.46421 1.08550 0.85866 0.81066 0.78867 0.78542 1.20437 1.20916 1.19392 1.22259 0.92706 0.94799 0.91130 0.76673 0.89402 0.89437 0.90705 0.90672 0.88580 0.88646 0.91013 0.91195 0.90302 0.89154 0.92738 0.91755 0.92379 0.83095 0.93954 0.89597 0.77479 0.91871 0.91303 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.49 13.34 -37.12 -0.50 -1.98 16 3 C -0.01 -0.08 5.70 -29.51 -0.17 -0.24 16 4 C -0.10 -0.70 4.46 -26.73 -0.12 -0.82 16 5 C -0.14 -0.82 4.89 -27.88 -0.14 -0.96 16 6 C 0.53 5.31 7.85 -10.98 -0.09 5.23 16 7 O -0.54 -7.64 16.23 5.56 0.09 -7.55 16 8 N -0.62 -5.60 3.33 -170.51 -0.57 -6.17 16 9 C 0.10 0.67 6.48 -3.07 -0.02 0.65 16 10 C -0.14 -1.06 5.68 -24.90 -0.14 -1.20 16 11 C -0.10 -0.95 2.67 -88.46 -0.24 -1.18 16 12 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 13 C 0.10 1.08 2.18 -67.72 -0.15 0.93 16 14 H 0.04 0.48 7.74 -51.93 -0.40 0.08 16 15 C -0.14 -1.60 9.19 37.16 0.34 -1.25 16 16 N -0.66 -9.93 5.93 -107.99 -0.64 -10.57 16 17 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 18 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 19 O -0.58 -15.50 15.78 5.54 0.09 -15.41 16 20 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 25 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 29 C 0.11 1.09 5.27 -2.52 -0.01 1.08 16 30 H 0.22 0.87 7.80 -54.08 -0.42 0.45 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.62 7.99 -51.93 -0.42 0.21 16 40 H 0.09 0.70 7.83 -51.93 -0.41 0.30 16 41 H 0.05 0.51 7.23 -51.93 -0.38 0.14 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 44 H 0.35 5.29 7.08 -39.29 -0.28 5.01 16 45 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.09 1.37 7.44 -51.93 -0.39 0.99 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 50 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 LS Contribution 415.71 15.07 6.26 6.26 Total: -1.00 -34.06 415.71 -8.51 -42.57 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.38 Total: 10.48 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.01 Total: 2.25 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.54 Total: -54.41 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.18 Total: -22.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.06 -8.51 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325395979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.792 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds