Wall clock time and date at job start Tue Mar 31 2020 19:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.65194 * 359.69707 * 8 6 5 10 10 C 1.54312 * 107.27753 * 180.96391 * 9 8 6 11 11 C 1.55167 * 102.86167 * 22.52322 * 10 9 8 12 12 H 1.09009 * 111.03524 * 82.39200 * 11 10 9 13 13 C 1.52991 * 111.00358 * 206.22564 * 11 10 9 14 14 H 1.08999 * 109.47413 * 52.19757 * 13 11 10 15 15 C 1.53003 * 109.47281 * 172.19664 * 13 11 10 16 16 N 1.46899 * 109.47629 * 292.19608 * 13 11 10 17 17 C 1.46906 * 111.00229 * 154.99740 * 16 13 11 18 18 C 1.50698 * 109.47373 * 180.02562 * 17 16 13 19 19 O 1.21298 * 119.99887 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00234 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00275 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00030 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00217 * 179.97438 * 21 20 18 24 24 N 1.31404 * 119.99969 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99950 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46927 * 90.00200 * 25 23 21 27 27 H 1.48498 * 109.47103 * 210.00037 * 25 23 21 28 28 H 1.48496 * 109.47267 * 330.00235 * 25 23 21 29 29 C 1.47428 * 125.64312 * 179.97438 * 8 6 5 30 30 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 33 33 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 34 34 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 35 35 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 36 36 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 37 37 H 1.09006 * 109.87781 * 300.50814 * 9 8 6 38 38 H 1.08997 * 109.88206 * 61.67076 * 9 8 6 39 39 H 1.08995 * 110.93171 * 264.11300 * 10 9 8 40 40 H 1.08998 * 110.59088 * 140.77927 * 10 9 8 41 41 H 1.09001 * 109.47018 * 300.00908 * 15 13 11 42 42 H 1.08998 * 109.46655 * 60.00257 * 15 13 11 43 43 H 1.08995 * 109.47423 * 180.02562 * 15 13 11 44 44 H 1.00905 * 110.99945 * 31.05293 * 16 13 11 45 45 H 1.09002 * 109.47064 * 300.00671 * 17 16 13 46 46 H 1.08999 * 109.46860 * 60.00291 * 17 16 13 47 47 H 0.96998 * 120.00239 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00311 * 179.97438 * 24 23 21 49 49 H 1.09001 * 110.36714 * 274.67154 * 29 8 6 50 50 H 1.08995 * 110.36830 * 36.88924 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.5734 1.3618 -1.5901 10 6 8.9239 1.8623 -2.1441 11 6 8.5425 3.2037 -2.8243 12 1 8.4918 4.0119 -2.0946 13 6 9.5209 3.5455 -3.9497 14 1 9.6059 2.6964 -4.6277 15 6 9.0070 4.7636 -4.7199 16 7 10.8393 3.8489 -3.3772 17 6 11.9074 3.6022 -4.3552 18 6 13.2420 3.9231 -3.7332 19 8 13.2980 4.3179 -2.5877 20 7 14.3733 3.7714 -4.4497 21 6 15.5875 4.0628 -3.8837 22 1 15.6374 4.4143 -2.8637 23 6 16.7540 3.9058 -4.6223 24 7 16.6933 3.4786 -5.8634 25 14 18.4083 4.3036 -3.8512 26 1 18.9543 3.0877 -3.1962 27 1 19.3483 4.7624 -4.9053 28 1 18.2376 5.3767 -2.8391 29 6 7.1378 2.8769 -3.3901 30 1 -1.0502 -0.0001 0.0004 31 1 3.0092 0.3479 0.9672 32 1 3.0098 -1.0104 -0.1831 33 1 2.7923 0.5859 -2.0681 34 1 2.7917 1.9442 -0.9178 35 1 5.0484 1.2819 -0.1332 36 1 5.0497 -0.0767 -1.2833 37 1 7.4788 1.6325 -0.5385 38 1 7.5062 0.2799 -1.7041 39 1 9.3292 1.1615 -2.8739 40 1 9.6328 2.0291 -1.3331 41 1 8.0287 4.5386 -5.1447 42 1 8.9221 5.6128 -4.0419 43 1 9.7038 5.0069 -5.5220 44 1 10.9957 3.3224 -2.5307 45 1 11.8896 2.5548 -4.6563 46 1 11.7523 4.2342 -5.2296 47 1 14.3286 3.4560 -5.3659 48 1 17.5075 3.3694 -6.3792 49 1 7.2246 2.3443 -4.3372 50 1 6.5578 3.7904 -3.5212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325395979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:55 Heat of formation + Delta-G solvation = -56.923908 kcal Electronic energy + Delta-G solvation = -27727.663832 eV Core-core repulsion = 23754.574787 eV Total energy + Delta-G solvation = -3973.089045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25634 -40.19403 -39.21639 -36.98405 -36.46750 -35.87892 -33.51909 -33.24595 -32.75894 -31.37198 -29.64702 -28.32393 -28.11432 -26.14358 -24.71249 -22.92723 -22.78020 -21.22603 -20.84323 -20.16114 -19.87706 -19.04823 -18.11838 -17.94907 -17.29876 -16.96710 -16.67129 -16.35815 -16.10346 -16.03463 -15.57569 -15.24786 -14.99640 -14.85351 -14.66732 -14.29258 -14.01440 -13.95123 -13.63147 -13.54960 -13.49016 -13.30988 -13.28424 -13.16614 -12.93698 -12.83310 -12.50233 -12.40270 -12.23695 -12.11640 -11.96394 -11.88990 -11.65731 -11.49571 -11.47457 -11.18089 -10.96990 -10.88806 -10.31215 -9.99607 -9.66789 -9.29813 -8.45122 -5.93673 1.39246 1.43336 1.55833 1.62057 1.81054 1.92819 2.04176 2.07557 2.30516 2.89842 3.22609 3.37943 3.49975 3.53558 3.59978 3.75978 3.89265 4.06630 4.15174 4.29294 4.30548 4.32325 4.37439 4.42279 4.48102 4.50277 4.60939 4.63263 4.64786 4.66526 4.74171 4.80141 4.86616 4.90156 4.97050 5.04995 5.11594 5.19470 5.20406 5.23931 5.30120 5.34569 5.42514 5.44822 5.93440 6.15094 6.48326 6.52264 6.62011 6.72394 7.13987 7.14521 7.58536 8.13648 8.72249 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.001539 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.383557 B =18184.882867 C =18652.406859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.094 4.094 5 C -0.126 4.126 6 C 0.518 3.482 7 O -0.593 6.593 8 N -0.621 5.621 9 C 0.102 3.898 10 C -0.133 4.133 11 C -0.093 4.093 12 H 0.086 0.914 13 C 0.100 3.900 14 H 0.057 0.943 15 C -0.143 4.143 16 N -0.676 5.676 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.273 1.273 29 C 0.115 3.885 30 H 0.238 0.762 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.347 0.653 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.071 0.929 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.679 -10.530 7.785 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.217 4.217 3 C -0.046 4.046 4 C -0.132 4.132 5 C -0.165 4.165 6 C 0.309 3.691 7 O -0.474 6.474 8 N -0.354 5.354 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.112 4.112 12 H 0.104 0.896 13 C -0.010 4.010 14 H 0.075 0.925 15 C -0.201 4.201 16 N -0.309 5.309 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.198 1.198 29 C -0.008 4.008 30 H 0.255 0.745 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.167 0.833 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.009 -9.344 7.911 27.845 hybrid contribution 0.767 -0.516 -0.549 1.075 sum -24.241 -9.860 7.362 27.186 Atomic orbital electron populations 1.25719 0.97148 1.00603 1.00458 1.23855 0.95888 1.00928 1.00980 1.18851 0.83685 1.01753 1.00350 1.21177 0.93831 0.99621 0.98607 1.21694 0.96162 1.00657 0.98025 1.21123 0.80200 0.82434 0.85329 1.90699 1.55574 1.50833 1.50281 1.48679 1.05462 1.46019 1.35261 1.22242 0.85068 0.98485 0.96188 1.22794 0.96983 0.95864 1.01477 1.22390 0.92970 0.98499 0.97375 0.89597 1.21480 0.87338 0.97316 0.94868 0.92511 1.21853 1.00667 0.97797 0.99748 1.60122 1.00345 1.63553 1.06915 1.21560 0.88248 1.00921 0.95913 1.20876 0.86501 0.82985 0.87041 1.90490 1.87738 1.52342 1.20276 1.41930 1.05164 1.59015 1.14943 1.19674 0.84082 1.43476 0.99133 0.90277 1.26007 1.02711 0.96501 0.95892 1.69666 1.30860 1.46377 1.09247 0.84950 0.77006 0.78681 0.77851 1.19522 1.19699 1.19829 1.22157 0.92489 0.94484 0.91685 0.74512 0.87594 0.87491 0.92804 0.92943 0.86014 0.85823 0.89204 0.88819 0.89976 0.89003 0.91109 0.92906 0.93078 0.83252 0.91426 0.88336 0.77029 0.91344 0.91089 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.13 19.25 74.32 1.43 -1.70 16 2 C -0.22 -3.30 13.34 31.13 0.42 -2.88 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.26 4.46 30.59 0.14 -1.12 16 5 C -0.13 -1.22 4.89 29.85 0.15 -1.07 16 6 C 0.52 9.90 7.85 87.66 0.69 10.59 16 7 O -0.59 -17.13 16.23 -3.01 -0.05 -17.18 16 8 N -0.62 -10.13 3.33 -811.77 -2.70 -12.83 16 9 C 0.10 1.01 6.48 86.72 0.56 1.58 16 10 C -0.13 -1.77 5.68 31.78 0.18 -1.59 16 11 C -0.09 -1.62 2.67 -9.40 -0.03 -1.65 16 12 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 13 C 0.10 2.09 2.18 44.91 0.10 2.19 16 14 H 0.06 1.09 7.74 -2.39 -0.02 1.08 16 15 C -0.14 -3.06 9.19 71.98 0.66 -2.39 16 16 N -0.68 -19.55 5.93 -495.58 -2.94 -22.49 16 17 C 0.07 2.15 5.97 85.56 0.51 2.66 16 18 C 0.44 20.27 7.82 87.66 0.69 20.96 16 19 O -0.62 -33.56 15.78 -3.09 -0.05 -33.61 16 20 N -0.57 -28.86 5.29 -306.99 -1.62 -30.48 16 21 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 25 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 29 C 0.12 2.10 5.27 86.86 0.46 2.56 16 30 H 0.24 1.71 7.80 -4.41 -0.03 1.67 16 31 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.62 8.14 -2.38 -0.02 0.61 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 1.06 7.99 -2.39 -0.02 1.04 16 40 H 0.09 1.23 7.83 -2.39 -0.02 1.21 16 41 H 0.07 1.27 7.23 -2.39 -0.02 1.25 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.15 7.45 -2.39 -0.02 1.14 16 44 H 0.35 10.20 7.08 -89.69 -0.64 9.57 16 45 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 46 H 0.10 3.00 7.44 -2.39 -0.02 2.98 16 47 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 50 H 0.06 1.39 7.94 -2.39 -0.02 1.38 16 Total: -1.00 -76.02 415.71 1.91 -74.11 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.43 Total: 36.75 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.39 Total: 10.16 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -6.98 Total: -114.62 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.10 Total: -50.79 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -76.02 1.91 -74.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325395979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.186 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds