Wall clock time and date at job start Tue Mar 31 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.91969 * 2 1 4 4 C 1.54912 * 111.00112 * 123.89649 * 2 1 3 5 5 N 1.47426 * 104.83117 * 81.06344 * 4 2 1 6 6 C 1.34774 * 125.64667 * 204.08754 * 5 4 2 7 7 O 1.21621 * 119.99598 * 180.02562 * 6 5 4 8 8 C 1.47103 * 120.00425 * 0.04578 * 6 5 4 9 9 C 1.32992 * 120.00315 * 179.97438 * 8 6 5 10 10 C 1.51407 * 136.31631 * 359.62646 * 9 8 6 11 11 C 1.53372 * 87.51847 * 206.05773 * 10 9 8 12 12 C 1.51408 * 136.31762 * 180.02562 * 9 8 6 13 13 C 1.47023 * 108.70275 * 24.12943 * 5 4 2 14 14 C 1.54316 * 107.27168 * 358.93930 * 13 5 4 15 15 H 1.08995 * 110.72378 * 96.35014 * 14 13 5 16 16 C 1.52998 * 110.72213 * 219.44710 * 14 13 5 17 17 N 1.46907 * 109.47021 * 293.54420 * 16 14 13 18 18 C 1.46895 * 110.99969 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47051 * 180.02562 * 18 17 16 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37090 * 119.99722 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99996 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47317 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47081 * 120.00006 * 26 24 22 29 29 H 1.48501 * 109.47213 * 240.00378 * 26 24 22 30 30 H 1.08992 * 109.47432 * 183.90795 * 1 2 3 31 31 H 1.09003 * 109.46972 * 303.91121 * 1 2 3 32 32 H 1.09001 * 109.46845 * 63.90605 * 1 2 3 33 33 H 1.08998 * 110.36668 * 322.22379 * 4 2 1 34 34 H 1.08998 * 110.36893 * 199.90246 * 4 2 1 35 35 H 1.07997 * 119.99561 * 0.02562 * 8 6 5 36 36 H 1.08999 * 113.56118 * 320.64698 * 10 9 8 37 37 H 1.08997 * 113.55935 * 91.37028 * 10 9 8 38 38 H 1.09003 * 113.96628 * 220.29116 * 11 10 9 39 39 H 1.08999 * 113.70405 * 88.81185 * 11 10 9 40 40 H 1.08996 * 113.55649 * 268.62354 * 12 9 8 41 41 H 1.08994 * 113.55973 * 39.35628 * 12 9 8 42 42 H 1.08995 * 109.87978 * 239.52216 * 13 5 4 43 43 H 1.08999 * 109.88478 * 118.35901 * 13 5 4 44 44 H 1.09003 * 109.47314 * 173.54531 * 16 14 13 45 45 H 1.09004 * 109.47259 * 53.54469 * 16 14 13 46 46 H 1.00893 * 111.00026 * 303.95479 * 17 16 14 47 47 H 1.09004 * 109.47210 * 60.00310 * 18 17 16 48 48 H 1.08997 * 109.47605 * 300.00670 * 18 17 16 49 49 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 50 50 H 0.97000 * 120.00310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8065 1.2004 5 7 2.0138 -2.2158 0.7736 6 6 1.9470 -3.2827 1.5944 7 8 1.8920 -4.4052 1.1293 8 6 1.9402 -3.0896 3.0526 9 6 1.8738 -4.1424 3.8626 10 6 1.7877 -5.6452 3.7000 11 6 1.1019 -5.6874 5.0712 12 6 1.8432 -4.3726 5.3587 13 6 2.0285 -2.2647 -0.6958 14 6 2.0862 -0.8081 -1.2021 15 1 3.1129 -0.5172 -1.4238 16 6 1.1966 -0.6274 -2.4337 17 7 1.7469 -1.4031 -3.5533 18 6 0.9164 -1.2538 -4.7557 19 6 1.5106 -2.0622 -5.8802 20 8 2.5258 -2.7004 -5.6977 21 7 0.9139 -2.0761 -7.0887 22 6 1.4547 -2.8111 -8.1117 23 1 2.3586 -3.3794 -7.9492 24 6 0.8393 -2.8259 -9.3575 25 7 -0.2608 -2.1349 -9.5550 26 14 1.5758 -3.8280 -10.7513 27 1 2.8054 -4.5105 -10.2743 28 1 0.5913 -4.8428 -11.2052 29 1 1.9160 -2.9277 -11.8822 30 1 -0.3634 -1.0252 0.0700 31 1 -0.3633 0.5734 0.8529 32 1 -0.3633 0.4520 -0.9229 33 1 1.4671 -0.6459 2.0837 34 1 3.1181 -0.5233 1.4026 35 1 1.9883 -2.0929 3.4655 36 1 1.1404 -5.9585 2.8809 37 1 2.7598 -6.1380 3.6835 38 1 1.4201 -6.5191 5.6999 39 1 0.0183 -5.5802 5.0227 40 1 2.8305 -4.5161 5.7976 41 1 1.2414 -3.6425 5.8997 42 1 1.1218 -2.7480 -1.0596 43 1 2.9062 -2.8118 -1.0398 44 1 1.1617 0.4277 -2.7051 45 1 0.1893 -0.9783 -2.2090 46 1 2.7033 -1.1410 -3.7392 47 1 0.8792 -0.2030 -5.0434 48 1 -0.0926 -1.6092 -4.5469 49 1 0.0999 -1.5689 -7.2335 50 1 -0.6907 -2.1454 -10.4245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325509168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:38 Heat of formation + Delta-G solvation = -29.921989 kcal Electronic energy + Delta-G solvation = -28239.444502 eV Core-core repulsion = 24267.526348 eV Total energy + Delta-G solvation = -3971.918154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46610 -39.18897 -38.26981 -37.74117 -35.33364 -33.84653 -32.82632 -31.29924 -31.19297 -30.06455 -27.22033 -26.91068 -26.10250 -25.16778 -23.88042 -23.01074 -22.13514 -20.08985 -19.71283 -19.10701 -18.02107 -17.81187 -17.36991 -16.54073 -16.05976 -15.81223 -15.62468 -15.44290 -14.90509 -14.72846 -14.44529 -14.33942 -14.00172 -13.68239 -13.54198 -13.33700 -12.96456 -12.80582 -12.63024 -12.58791 -12.30417 -12.18178 -12.09825 -11.95530 -11.72593 -11.53734 -11.48101 -11.34695 -11.05850 -10.92859 -10.85077 -10.79668 -10.65724 -10.32090 -10.19838 -9.77491 -9.49487 -9.49018 -8.65576 -8.43521 -8.03401 -7.93179 -6.39461 -3.79994 1.13312 2.86666 3.18401 3.20214 3.28807 3.36490 3.91081 3.94133 4.04512 4.14245 4.20416 4.28127 4.41228 4.45247 4.70801 4.75260 4.82245 4.94848 5.11834 5.15663 5.16185 5.19891 5.23732 5.26988 5.29572 5.30317 5.34588 5.47049 5.51427 5.57705 5.62772 5.66478 5.73727 5.81349 5.84739 5.86837 5.92886 5.96376 6.00513 6.08574 6.19395 6.23245 6.29321 6.38570 7.21741 7.45439 7.57927 7.67349 8.09287 8.15180 8.64023 9.20669 9.57112 10.08714 10.78428 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.001896 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.380225 B =14761.615508 C =15902.988088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.104 3.896 5 N -0.616 5.616 6 C 0.562 3.438 7 O -0.538 6.538 8 C -0.196 4.196 9 C -0.064 4.064 10 C -0.107 4.107 11 C -0.143 4.143 12 C -0.108 4.108 13 C 0.125 3.875 14 C -0.092 4.092 15 H 0.085 0.915 16 C 0.068 3.932 17 N -0.669 5.669 18 C 0.052 3.948 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 6.078 29.511 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.353 3.647 7 O -0.416 6.416 8 C -0.216 4.216 9 C -0.066 4.066 10 C -0.144 4.144 11 C -0.180 4.180 12 C -0.145 4.145 13 C 0.003 3.997 14 C -0.111 4.111 15 H 0.104 0.896 16 C -0.062 4.062 17 N -0.302 5.302 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.811 4.394 29.429 29.766 hybrid contribution -0.025 1.009 -1.174 1.549 sum 0.786 5.403 28.255 28.777 Atomic orbital electron populations 1.21809 0.94001 1.02414 1.02094 1.22372 0.96689 0.98998 0.93894 0.89042 1.22403 1.00825 0.80937 0.97754 1.48406 1.73206 1.05973 1.07463 1.18056 0.76861 0.83381 0.86394 1.90811 1.50176 1.23049 1.77612 1.21574 1.09809 0.98405 0.91833 1.23493 0.90480 0.96022 0.96582 1.22230 1.01889 0.92235 0.98005 1.22727 1.00100 0.97538 0.97646 1.22344 1.01607 0.98098 0.92403 1.21875 1.03359 0.96587 0.77915 1.22258 1.00239 0.94457 0.94165 0.89616 1.22037 0.98596 0.95381 0.90179 1.60061 1.06240 1.58934 1.04943 1.21655 0.97973 0.98111 0.90355 1.19824 0.87135 0.86647 0.83747 1.90530 1.26355 1.47146 1.82542 1.41870 1.25509 1.43905 1.08890 1.19761 1.09719 1.24507 0.88764 0.87865 1.25261 0.96057 0.97895 0.98809 1.69620 1.18577 1.41497 1.24704 0.85799 0.79059 0.79178 0.80306 1.19213 1.20758 1.20799 0.92210 0.92552 0.91674 0.90558 0.91268 0.85199 0.89399 0.88381 0.90374 0.89727 0.88131 0.90446 0.90652 0.90957 0.94982 0.90457 0.83186 0.93910 0.89655 0.77488 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.13 37.16 0.30 -0.79 16 2 C -0.10 -0.74 3.54 -88.47 -0.31 -1.05 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.10 0.79 5.99 -2.53 -0.02 0.77 16 5 N -0.62 -7.04 3.31 -171.92 -0.57 -7.61 16 6 C 0.56 7.44 7.80 -12.67 -0.10 7.34 16 7 O -0.54 -9.29 15.48 5.26 0.08 -9.21 16 8 C -0.20 -1.91 9.46 -37.81 -0.36 -2.27 16 9 C -0.06 -0.59 6.93 -100.48 -0.70 -1.28 16 10 C -0.11 -0.99 6.99 -27.56 -0.19 -1.18 16 11 C -0.14 -0.92 8.17 -26.21 -0.21 -1.14 16 12 C -0.11 -0.65 7.95 -27.41 -0.22 -0.86 16 13 C 0.12 1.61 5.96 -3.07 -0.02 1.59 16 14 C -0.09 -0.92 3.00 -88.79 -0.27 -1.19 16 15 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 16 C 0.07 0.78 3.94 -3.82 -0.02 0.77 16 17 N -0.67 -10.63 5.93 -115.05 -0.68 -11.31 16 18 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 19 C 0.44 10.56 7.82 -10.98 -0.09 10.48 16 20 O -0.58 -16.09 15.78 5.55 0.09 -16.00 16 21 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 22 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 23 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 26 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.49 6.76 -51.93 -0.35 0.13 16 33 H 0.08 0.46 7.06 -51.93 -0.37 0.09 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.13 0.90 6.87 -52.49 -0.36 0.54 16 36 H 0.09 1.01 7.49 -51.93 -0.39 0.62 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.13 7.76 -51.93 -0.40 0.73 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.90 6.67 -51.93 -0.35 0.55 16 46 H 0.35 5.69 8.43 -39.30 -0.33 5.36 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -34.40 404.91 -10.09 -44.48 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.29 Total: 11.93 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.46 Total: 3.95 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.59 Total: -57.62 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.17 Total: -25.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.40 -10.09 -44.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325509168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.563 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds