Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.91969 * 2 1 4 4 C 1.54912 * 111.00112 * 123.89649 * 2 1 3 5 5 N 1.47426 * 104.83117 * 81.06344 * 4 2 1 6 6 C 1.34774 * 125.64667 * 204.08754 * 5 4 2 7 7 O 1.21621 * 119.99598 * 180.02562 * 6 5 4 8 8 C 1.47103 * 120.00425 * 0.04578 * 6 5 4 9 9 C 1.32992 * 120.00315 * 179.97438 * 8 6 5 10 10 C 1.51407 * 136.31631 * 359.62646 * 9 8 6 11 11 C 1.53372 * 87.51847 * 206.05773 * 10 9 8 12 12 C 1.51408 * 136.31762 * 180.02562 * 9 8 6 13 13 C 1.47023 * 108.70275 * 24.12943 * 5 4 2 14 14 C 1.54316 * 107.27168 * 358.93930 * 13 5 4 15 15 H 1.08995 * 110.72378 * 96.35014 * 14 13 5 16 16 C 1.52998 * 110.72213 * 219.44710 * 14 13 5 17 17 N 1.46907 * 109.47021 * 293.54420 * 16 14 13 18 18 C 1.46895 * 110.99969 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47051 * 180.02562 * 18 17 16 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37090 * 119.99722 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99996 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47317 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47081 * 120.00006 * 26 24 22 29 29 H 1.48501 * 109.47213 * 240.00378 * 26 24 22 30 30 H 1.08992 * 109.47432 * 183.90795 * 1 2 3 31 31 H 1.09003 * 109.46972 * 303.91121 * 1 2 3 32 32 H 1.09001 * 109.46845 * 63.90605 * 1 2 3 33 33 H 1.08998 * 110.36668 * 322.22379 * 4 2 1 34 34 H 1.08998 * 110.36893 * 199.90246 * 4 2 1 35 35 H 1.07997 * 119.99561 * 0.02562 * 8 6 5 36 36 H 1.08999 * 113.56118 * 320.64698 * 10 9 8 37 37 H 1.08997 * 113.55935 * 91.37028 * 10 9 8 38 38 H 1.09003 * 113.96628 * 220.29116 * 11 10 9 39 39 H 1.08999 * 113.70405 * 88.81185 * 11 10 9 40 40 H 1.08996 * 113.55649 * 268.62354 * 12 9 8 41 41 H 1.08994 * 113.55973 * 39.35628 * 12 9 8 42 42 H 1.08995 * 109.87978 * 239.52216 * 13 5 4 43 43 H 1.08999 * 109.88478 * 118.35901 * 13 5 4 44 44 H 1.09003 * 109.47314 * 173.54531 * 16 14 13 45 45 H 1.09004 * 109.47259 * 53.54469 * 16 14 13 46 46 H 1.00893 * 111.00026 * 303.95479 * 17 16 14 47 47 H 1.09004 * 109.47210 * 60.00310 * 18 17 16 48 48 H 1.08997 * 109.47605 * 300.00670 * 18 17 16 49 49 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 50 50 H 0.97000 * 120.00310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8065 1.2004 5 7 2.0138 -2.2158 0.7736 6 6 1.9470 -3.2827 1.5944 7 8 1.8920 -4.4052 1.1293 8 6 1.9402 -3.0896 3.0526 9 6 1.8738 -4.1424 3.8626 10 6 1.7877 -5.6452 3.7000 11 6 1.1019 -5.6874 5.0712 12 6 1.8432 -4.3726 5.3587 13 6 2.0285 -2.2647 -0.6958 14 6 2.0862 -0.8081 -1.2021 15 1 3.1129 -0.5172 -1.4238 16 6 1.1966 -0.6274 -2.4337 17 7 1.7469 -1.4031 -3.5533 18 6 0.9164 -1.2538 -4.7557 19 6 1.5106 -2.0622 -5.8802 20 8 2.5258 -2.7004 -5.6977 21 7 0.9139 -2.0761 -7.0887 22 6 1.4547 -2.8111 -8.1117 23 1 2.3586 -3.3794 -7.9492 24 6 0.8393 -2.8259 -9.3575 25 7 -0.2608 -2.1349 -9.5550 26 14 1.5758 -3.8280 -10.7513 27 1 2.8054 -4.5105 -10.2743 28 1 0.5913 -4.8428 -11.2052 29 1 1.9160 -2.9277 -11.8822 30 1 -0.3634 -1.0252 0.0700 31 1 -0.3633 0.5734 0.8529 32 1 -0.3633 0.4520 -0.9229 33 1 1.4671 -0.6459 2.0837 34 1 3.1181 -0.5233 1.4026 35 1 1.9883 -2.0929 3.4655 36 1 1.1404 -5.9585 2.8809 37 1 2.7598 -6.1380 3.6835 38 1 1.4201 -6.5191 5.6999 39 1 0.0183 -5.5802 5.0227 40 1 2.8305 -4.5161 5.7976 41 1 1.2414 -3.6425 5.8997 42 1 1.1218 -2.7480 -1.0596 43 1 2.9062 -2.8118 -1.0398 44 1 1.1617 0.4277 -2.7051 45 1 0.1893 -0.9783 -2.2090 46 1 2.7033 -1.1410 -3.7392 47 1 0.8792 -0.2030 -5.0434 48 1 -0.0926 -1.6092 -4.5469 49 1 0.0999 -1.5689 -7.2335 50 1 -0.6907 -2.1454 -10.4245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325509168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = -54.356921 kcal Electronic energy + Delta-G solvation = -28240.504080 eV Core-core repulsion = 24267.526348 eV Total energy + Delta-G solvation = -3972.977732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35439 -40.20740 -39.80237 -38.71283 -36.64552 -35.83037 -33.81104 -33.26518 -32.04071 -31.02960 -28.55041 -27.68119 -26.75177 -26.63125 -25.21779 -23.90001 -22.94576 -21.22222 -20.79782 -20.42098 -19.89654 -18.71465 -18.25471 -17.79909 -17.36599 -16.92099 -16.49052 -16.45330 -16.34238 -16.05355 -15.63896 -15.47456 -15.33843 -15.11914 -14.61177 -14.32986 -14.15292 -13.96279 -13.54477 -13.47223 -13.35708 -13.26503 -13.04912 -12.93104 -12.90254 -12.83855 -12.64899 -12.53469 -12.42524 -12.13450 -11.95821 -11.69577 -11.59265 -11.53496 -11.49186 -11.44508 -10.71744 -10.36509 -10.25111 -10.03117 -9.58192 -9.29019 -8.48624 -5.97312 0.34943 1.34941 1.40087 1.54519 2.00064 2.03633 2.27450 2.28033 2.88675 3.18551 3.26721 3.43235 3.55553 3.56339 3.69354 3.81055 3.88466 4.10602 4.21596 4.24223 4.28712 4.32349 4.41730 4.51475 4.55883 4.58639 4.63454 4.65462 4.70345 4.72615 4.75785 4.83792 4.88671 4.90418 4.96290 5.02718 5.09998 5.15843 5.20508 5.25171 5.33618 5.36893 5.39411 5.49976 5.67034 5.88099 6.10301 6.42627 6.56772 6.58652 7.11089 7.17585 7.54550 8.10378 8.69018 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.001896 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.380225 B =14761.615508 C =15902.988088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.125 0.875 4 C 0.099 3.901 5 N -0.615 5.615 6 C 0.547 3.453 7 O -0.597 6.597 8 C -0.204 4.204 9 C -0.071 4.071 10 C -0.125 4.125 11 C -0.134 4.134 12 C -0.090 4.090 13 C 0.126 3.874 14 C -0.084 4.084 15 H 0.093 0.907 16 C 0.072 3.928 17 N -0.690 5.690 18 C 0.068 3.932 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.268 1.268 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.166 0.834 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.345 0.655 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 8.715 31.782 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.143 0.857 4 C -0.022 4.022 5 N -0.347 5.347 6 C 0.340 3.660 7 O -0.480 6.480 8 C -0.224 4.224 9 C -0.073 4.073 10 C -0.162 4.162 11 C -0.171 4.171 12 C -0.126 4.126 13 C 0.003 3.997 14 C -0.103 4.103 15 H 0.111 0.889 16 C -0.057 4.057 17 N -0.323 5.323 18 C -0.065 4.065 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.193 1.193 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.183 0.817 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.163 0.837 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.432 7.102 31.723 32.511 hybrid contribution 0.075 0.134 -1.869 1.875 sum 0.506 7.237 29.854 30.723 Atomic orbital electron populations 1.21812 0.94021 1.01189 1.03225 1.22416 0.96547 0.99974 0.91728 0.85745 1.22741 1.02621 0.78149 0.98730 1.48519 1.71973 1.07642 1.06586 1.18858 0.75987 0.82913 0.88208 1.90776 1.53052 1.25378 1.78830 1.21656 1.11040 1.00325 0.89380 1.23975 0.88929 0.95436 0.98998 1.22360 1.01729 0.93238 0.98856 1.22721 1.00011 0.98878 0.95505 1.22355 1.02745 0.97702 0.89802 1.21703 1.00188 0.98328 0.79456 1.22222 1.00720 0.92718 0.94682 0.88874 1.22105 0.98493 0.96103 0.88974 1.60042 1.06011 1.60963 1.05241 1.21498 0.98024 0.98291 0.88658 1.20966 0.86274 0.85969 0.84445 1.90496 1.28336 1.48930 1.83371 1.41934 1.25823 1.44070 1.09246 1.19698 1.09969 1.26234 0.90547 0.90521 1.26041 0.96266 0.98502 1.00459 1.69673 1.18985 1.41733 1.25640 0.84869 0.78078 0.77966 0.77395 1.20000 1.19642 1.19288 0.94767 0.90395 0.91450 0.88040 0.89392 0.81696 0.92891 0.88392 0.88591 0.89717 0.86261 0.88308 0.93804 0.94307 0.92338 0.90610 0.83650 0.91021 0.88272 0.76918 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.13 71.98 0.59 -1.20 16 2 C -0.09 -1.01 3.54 -9.40 -0.03 -1.04 16 3 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 4 C 0.10 1.22 5.99 86.86 0.52 1.74 16 5 N -0.61 -14.23 3.31 -816.07 -2.70 -16.93 16 6 C 0.55 15.19 7.80 86.57 0.67 15.86 16 7 O -0.60 -22.71 15.48 -4.10 -0.06 -22.77 16 8 C -0.20 -3.79 9.46 23.43 0.22 -3.57 16 9 C -0.07 -1.25 6.93 -17.17 -0.12 -1.37 16 10 C -0.12 -2.44 6.99 30.06 0.21 -2.23 16 11 C -0.13 -1.55 8.17 30.93 0.25 -1.29 16 12 C -0.09 -0.82 7.95 30.15 0.24 -0.58 16 13 C 0.13 3.47 5.96 86.73 0.52 3.98 16 14 C -0.08 -1.60 3.00 -9.61 -0.03 -1.63 16 15 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 16 C 0.07 1.56 3.94 86.30 0.34 1.90 16 17 N -0.69 -21.98 5.93 -517.92 -3.07 -25.05 16 18 C 0.07 2.35 6.17 85.56 0.53 2.88 16 19 C 0.44 21.43 7.82 87.66 0.69 22.11 16 20 O -0.62 -36.05 15.78 -3.07 -0.05 -36.10 16 21 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 22 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.36 13.05 21.66 0.28 -50.07 16 26 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 H 0.03 0.60 7.91 -2.39 -0.02 0.58 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.81 6.76 -2.39 -0.02 0.79 16 33 H 0.10 0.80 7.06 -2.39 -0.02 0.78 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.17 1.75 6.87 -2.91 -0.02 1.73 16 36 H 0.05 1.38 7.49 -2.39 -0.02 1.37 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.04 1.45 7.76 -2.39 -0.02 1.43 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.69 6.67 -2.39 -0.02 1.67 16 46 H 0.34 11.38 8.43 -89.70 -0.76 10.62 16 47 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 50 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -81.05 404.91 0.14 -80.92 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.54 Total: 39.27 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.87 Total: 16.57 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -7.12 Total: -123.92 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.11 Total: -58.87 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -81.05 0.14 -80.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325509168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.559 kcal (2) G-P(sol) polarization free energy of solvation -81.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds