Wall clock time and date at job start Tue Mar 31 2020 18:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47115 * 2 1 4 4 N 1.46501 * 109.47740 * 120.00467 * 2 1 3 5 5 C 1.34769 * 120.00011 * 275.00046 * 4 2 1 6 6 O 1.21358 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.49453 * 120.00473 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99369 * 5.09242 * 7 5 4 9 9 N 1.34769 * 120.00243 * 185.08548 * 7 5 4 10 10 C 1.46497 * 120.00011 * 185.03773 * 9 7 5 11 11 C 1.53005 * 109.47129 * 184.78311 * 10 9 7 12 12 C 1.50703 * 115.54676 * 294.81585 * 11 10 9 13 13 H 1.07998 * 119.99578 * 95.20301 * 12 11 10 14 14 C 1.37876 * 120.00032 * 274.92215 * 12 11 10 15 15 N 1.31513 * 120.00087 * 355.42383 * 14 12 11 16 16 Si 1.86797 * 119.99764 * 175.41970 * 14 12 11 17 17 H 1.48506 * 109.47089 * 90.00605 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00447 * 16 14 12 19 19 H 1.48505 * 109.47313 * 330.00182 * 16 14 12 20 20 C 1.52992 * 117.50017 * 80.49188 * 11 10 9 21 21 C 1.52998 * 117.49741 * 149.15238 * 11 10 9 22 22 C 1.50702 * 109.46734 * 240.00503 * 2 1 3 23 23 C 1.29821 * 118.55927 * 115.00048 * 22 2 1 24 24 C 1.50144 * 123.29071 * 180.37338 * 23 22 2 25 25 N 1.46848 * 110.27013 * 342.94738 * 24 23 22 26 26 C 1.46896 * 110.99634 * 174.31673 * 25 24 23 27 27 C 1.47233 * 110.20616 * 50.92708 * 25 24 23 28 28 C 1.50313 * 118.55247 * 294.72984 * 22 2 1 29 29 H 1.08993 * 109.47691 * 59.99448 * 1 2 3 30 30 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46903 * 299.99618 * 1 2 3 32 32 H 0.97004 * 120.00150 * 94.99368 * 4 2 1 33 33 H 0.97000 * 120.00088 * 5.04363 * 9 7 5 34 34 H 1.09004 * 109.47290 * 64.78043 * 10 9 7 35 35 H 1.09002 * 109.47245 * 304.78204 * 10 9 7 36 36 H 0.97005 * 120.00163 * 184.99518 * 15 14 12 37 37 H 1.09001 * 117.49686 * 215.00072 * 20 11 10 38 38 H 1.09004 * 117.49963 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.50544 * 359.96959 * 21 11 10 40 40 H 1.09001 * 117.50141 * 144.97625 * 21 11 10 41 41 H 1.08004 * 118.35376 * 0.39425 * 23 22 2 42 42 H 1.08996 * 109.33598 * 103.19114 * 24 23 22 43 43 H 1.09000 * 109.33522 * 222.86730 * 24 23 22 44 44 H 1.09000 * 109.47832 * 56.04552 * 26 25 24 45 45 H 1.09005 * 109.46999 * 176.04331 * 26 25 24 46 46 H 1.08998 * 109.47349 * 296.04147 * 26 25 24 47 47 H 1.08996 * 109.64229 * 50.89056 * 27 25 24 48 48 H 1.09002 * 109.63484 * 171.29618 * 27 25 24 49 49 H 1.08997 * 109.43203 * 283.57889 * 28 22 2 50 50 H 1.08997 * 109.42596 * 43.43201 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8590 1.1591 2.4115 7 6 2.6450 -0.7231 3.5774 8 8 3.0205 -1.8746 3.5023 9 7 2.6769 -0.0797 4.7611 10 6 3.2665 -0.7313 5.9333 11 6 3.0698 0.1570 7.1635 12 6 3.7929 1.4789 7.1329 13 1 3.2802 2.3671 6.7943 14 6 5.1071 1.5554 7.5426 15 7 5.7023 0.4954 8.0444 16 14 6.0424 3.1647 7.3850 17 1 5.8689 3.9617 8.6260 18 1 7.4850 2.8805 7.1769 19 1 5.5169 3.9313 6.2267 20 6 1.7060 0.1136 7.8554 21 6 2.9224 -0.5364 8.5193 22 6 2.0322 -0.7103 -1.2306 23 6 2.6934 -0.0276 -2.1149 24 6 3.2344 -0.6251 -3.3816 25 7 3.2724 -2.0894 -3.2776 26 6 3.6713 -2.6976 -4.5539 27 6 1.9651 -2.6019 -2.8347 28 6 1.7509 -2.1796 -1.3771 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2491 -1.6319 1.1525 33 1 2.3095 0.8148 4.8371 34 1 4.3320 -0.8876 5.7647 35 1 2.7798 -1.6926 6.0978 36 1 6.6022 0.5669 8.3993 37 1 1.3316 1.0412 8.2886 38 1 0.9489 -0.5482 7.4346 39 1 2.9651 -1.6255 8.5350 40 1 3.3487 -0.0367 9.3892 41 1 2.8631 1.0229 -1.9300 42 1 2.5956 -0.3391 -4.2171 43 1 4.2437 -0.2517 -3.5544 44 1 4.6317 -2.2881 -4.8671 45 1 3.7595 -3.7770 -4.4302 46 1 2.9187 -2.4790 -5.3115 47 1 1.1766 -2.1843 -3.4607 48 1 1.9539 -3.6893 -2.9083 49 1 2.4225 -2.7437 -0.7300 50 1 0.7186 -2.3813 -1.0912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329817501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:16 Heat of formation + Delta-G solvation = -28.270164 kcal Electronic energy + Delta-G solvation = -28906.327545 eV Core-core repulsion = 24934.481019 eV Total energy + Delta-G solvation = -3971.846526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47573 -39.50314 -38.21800 -36.70061 -36.32043 -33.70203 -32.97752 -31.95889 -31.25988 -30.44455 -27.15068 -27.05049 -25.47772 -24.45478 -24.05581 -22.81424 -21.38483 -21.06904 -19.89482 -19.52859 -18.35722 -17.76432 -16.78879 -16.29841 -16.05668 -15.62262 -15.48186 -15.18261 -15.13867 -14.69679 -14.58691 -14.38261 -14.04794 -13.72063 -13.63509 -13.28121 -13.18486 -12.95801 -12.77669 -12.67181 -12.46282 -12.41641 -11.89931 -11.83496 -11.68972 -11.60822 -11.32560 -11.21723 -10.98377 -10.93615 -10.71565 -10.51628 -10.24050 -9.61060 -9.38738 -9.19964 -9.12557 -9.07687 -8.72582 -8.51986 -8.37080 -8.16812 -6.07605 -4.17186 1.73375 1.83544 2.81394 3.27759 3.35710 3.39699 3.53109 3.62433 4.09039 4.18214 4.37173 4.40338 4.72322 4.79722 4.89990 4.92257 4.97329 5.07827 5.08618 5.13235 5.18128 5.20092 5.30228 5.35483 5.41098 5.46293 5.47826 5.56516 5.72135 5.75375 5.95343 5.97271 6.07644 6.27025 6.29809 6.41316 6.48988 6.55684 6.61872 6.67965 6.72702 6.76422 7.01932 7.09491 7.26550 7.34661 7.51144 7.82291 7.88813 8.17749 8.32760 8.54784 8.84954 9.50468 10.99435 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002354 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.260174 B =11893.991234 C =12396.023398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 H 0.095 0.905 4 N -0.700 5.700 5 C 0.510 3.490 6 O -0.519 6.519 7 C 0.495 3.505 8 O -0.540 6.540 9 N -0.666 5.666 10 C 0.159 3.841 11 C 0.021 3.979 12 C -0.500 4.500 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.122 4.122 23 C -0.142 4.142 24 C 0.084 3.916 25 N -0.539 5.539 26 C 0.023 3.977 27 C 0.053 3.947 28 C -0.083 4.083 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.411 0.589 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.025 0.975 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -5.271 -22.762 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.113 0.887 4 N -0.354 5.354 5 C 0.291 3.709 6 O -0.394 6.394 7 C 0.274 3.726 8 O -0.419 6.419 9 N -0.316 5.316 10 C 0.037 3.963 11 C 0.020 3.980 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.512 5.512 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.178 4.178 22 C -0.123 4.123 23 C -0.161 4.161 24 C -0.043 4.043 25 N -0.263 5.263 26 C -0.125 4.125 27 C -0.075 4.075 28 C -0.120 4.120 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.248 0.752 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.021 -5.428 -22.363 24.370 hybrid contribution 0.050 1.088 -0.568 1.228 sum -7.970 -4.340 -22.931 24.662 Atomic orbital electron populations 1.22173 0.94367 1.02506 1.02829 1.20084 0.94385 0.96676 0.81595 0.88734 1.45834 1.66064 1.14956 1.08525 1.20509 0.78408 0.87082 0.84905 1.90751 1.48234 1.15418 1.85031 1.19934 0.81083 0.86794 0.84761 1.90712 1.48913 1.16673 1.85641 1.45883 1.57100 1.20412 1.08189 1.21210 0.97851 0.93750 0.83509 1.19034 0.93748 0.96263 0.88942 1.20380 0.95684 0.92210 1.45495 0.92010 1.24988 0.97310 0.96240 0.94555 1.69987 1.14119 1.28359 1.38708 0.86617 0.79228 0.83758 0.78636 1.20659 1.21165 1.19624 1.23032 0.91826 1.01755 1.08105 1.22474 0.99870 0.96748 0.98671 1.20958 0.99609 0.95963 0.95736 1.22115 0.98005 1.00016 0.95989 1.20977 1.01025 0.87261 0.95041 1.62422 1.28917 1.05491 1.29495 1.22391 1.00377 1.00392 0.89328 1.22226 0.89463 1.00179 0.95602 1.20541 1.02112 0.92679 0.96690 0.91461 0.92076 0.91481 0.75211 0.75024 0.90807 0.93410 0.92859 0.90227 0.91652 0.91734 0.89395 0.86613 0.93604 0.89401 0.91191 0.91081 0.95650 0.94370 0.90221 0.89646 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.33 37.16 0.35 -1.17 16 2 C 0.18 1.91 2.72 -69.08 -0.19 1.72 16 3 H 0.09 1.14 7.06 -51.93 -0.37 0.78 16 4 N -0.70 -9.12 5.03 -55.36 -0.28 -9.40 16 5 C 0.51 8.46 7.85 -11.59 -0.09 8.37 16 6 O -0.52 -9.57 16.16 5.49 0.09 -9.48 16 7 C 0.49 9.41 7.88 -11.59 -0.09 9.32 16 8 O -0.54 -11.09 16.47 5.50 0.09 -11.00 16 9 N -0.67 -13.48 5.46 -60.73 -0.33 -13.82 16 10 C 0.16 3.57 5.53 -4.04 -0.02 3.55 16 11 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 12 C -0.50 -13.04 8.59 -34.44 -0.30 -13.33 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 15 N -0.88 -24.21 12.65 55.43 0.70 -23.51 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.21 -4.39 9.96 -26.70 -0.27 -4.66 16 21 C -0.14 -3.17 9.14 -26.70 -0.24 -3.41 16 22 C -0.12 -1.13 4.91 -100.92 -0.50 -1.62 16 23 C -0.14 -1.26 9.53 -35.96 -0.34 -1.60 16 24 C 0.08 0.66 5.66 -5.27 -0.03 0.63 16 25 N -0.54 -4.47 4.97 -244.31 -1.21 -5.69 16 26 C 0.02 0.15 9.54 60.06 0.57 0.72 16 27 C 0.05 0.39 5.60 -3.51 -0.02 0.37 16 28 C -0.08 -0.67 5.42 -27.94 -0.15 -0.82 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 6.97 -51.93 -0.36 0.15 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.41 5.04 7.08 -40.82 -0.29 4.75 16 33 H 0.41 8.29 7.84 -40.82 -0.32 7.97 16 34 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 41 H 0.12 0.96 7.64 -52.48 -0.40 0.56 16 42 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 46 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 47 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 48 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 49 H 0.09 0.76 7.64 -51.93 -0.40 0.36 16 50 H 0.08 0.55 6.86 -51.93 -0.36 0.20 16 LS Contribution 409.25 15.07 6.17 6.17 Total: -1.00 -29.75 409.25 -9.81 -39.56 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.36 Total: 11.09 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.64 Total: 0.19 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -1.12 Total: -52.42 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.18 Total: -20.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.75 -9.81 -39.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329817501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.288 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds