Wall clock time and date at job start Tue Mar 31 2020 18:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47115 * 2 1 4 4 N 1.46501 * 109.47740 * 120.00467 * 2 1 3 5 5 C 1.34769 * 120.00011 * 275.00046 * 4 2 1 6 6 O 1.21358 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.49453 * 120.00473 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99369 * 5.09242 * 7 5 4 9 9 N 1.34769 * 120.00243 * 185.08548 * 7 5 4 10 10 C 1.46497 * 120.00011 * 185.03773 * 9 7 5 11 11 C 1.53005 * 109.47129 * 184.78311 * 10 9 7 12 12 C 1.50703 * 115.54676 * 294.81585 * 11 10 9 13 13 H 1.07998 * 119.99578 * 95.20301 * 12 11 10 14 14 C 1.37876 * 120.00032 * 274.92215 * 12 11 10 15 15 N 1.31513 * 120.00087 * 355.42383 * 14 12 11 16 16 Si 1.86797 * 119.99764 * 175.41970 * 14 12 11 17 17 H 1.48506 * 109.47089 * 90.00605 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00447 * 16 14 12 19 19 H 1.48505 * 109.47313 * 330.00182 * 16 14 12 20 20 C 1.52992 * 117.50017 * 80.49188 * 11 10 9 21 21 C 1.52998 * 117.49741 * 149.15238 * 11 10 9 22 22 C 1.50702 * 109.46734 * 240.00503 * 2 1 3 23 23 C 1.29821 * 118.55927 * 115.00048 * 22 2 1 24 24 C 1.50144 * 123.29071 * 180.37338 * 23 22 2 25 25 N 1.46848 * 110.27013 * 342.94738 * 24 23 22 26 26 C 1.46896 * 110.99634 * 174.31673 * 25 24 23 27 27 C 1.47233 * 110.20616 * 50.92708 * 25 24 23 28 28 C 1.50313 * 118.55247 * 294.72984 * 22 2 1 29 29 H 1.08993 * 109.47691 * 59.99448 * 1 2 3 30 30 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46903 * 299.99618 * 1 2 3 32 32 H 0.97004 * 120.00150 * 94.99368 * 4 2 1 33 33 H 0.97000 * 120.00088 * 5.04363 * 9 7 5 34 34 H 1.09004 * 109.47290 * 64.78043 * 10 9 7 35 35 H 1.09002 * 109.47245 * 304.78204 * 10 9 7 36 36 H 0.97005 * 120.00163 * 184.99518 * 15 14 12 37 37 H 1.09001 * 117.49686 * 215.00072 * 20 11 10 38 38 H 1.09004 * 117.49963 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.50544 * 359.96959 * 21 11 10 40 40 H 1.09001 * 117.50141 * 144.97625 * 21 11 10 41 41 H 1.08004 * 118.35376 * 0.39425 * 23 22 2 42 42 H 1.08996 * 109.33598 * 103.19114 * 24 23 22 43 43 H 1.09000 * 109.33522 * 222.86730 * 24 23 22 44 44 H 1.09000 * 109.47832 * 56.04552 * 26 25 24 45 45 H 1.09005 * 109.46999 * 176.04331 * 26 25 24 46 46 H 1.08998 * 109.47349 * 296.04147 * 26 25 24 47 47 H 1.08996 * 109.64229 * 50.89056 * 27 25 24 48 48 H 1.09002 * 109.63484 * 171.29618 * 27 25 24 49 49 H 1.08997 * 109.43203 * 283.57889 * 28 22 2 50 50 H 1.08997 * 109.42596 * 43.43201 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8590 1.1591 2.4115 7 6 2.6450 -0.7231 3.5774 8 8 3.0205 -1.8746 3.5023 9 7 2.6769 -0.0797 4.7611 10 6 3.2665 -0.7313 5.9333 11 6 3.0698 0.1570 7.1635 12 6 3.7929 1.4789 7.1329 13 1 3.2802 2.3671 6.7943 14 6 5.1071 1.5554 7.5426 15 7 5.7023 0.4954 8.0444 16 14 6.0424 3.1647 7.3850 17 1 5.8689 3.9617 8.6260 18 1 7.4850 2.8805 7.1769 19 1 5.5169 3.9313 6.2267 20 6 1.7060 0.1136 7.8554 21 6 2.9224 -0.5364 8.5193 22 6 2.0322 -0.7103 -1.2306 23 6 2.6934 -0.0276 -2.1149 24 6 3.2344 -0.6251 -3.3816 25 7 3.2724 -2.0894 -3.2776 26 6 3.6713 -2.6976 -4.5539 27 6 1.9651 -2.6019 -2.8347 28 6 1.7509 -2.1796 -1.3771 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2491 -1.6319 1.1525 33 1 2.3095 0.8148 4.8371 34 1 4.3320 -0.8876 5.7647 35 1 2.7798 -1.6926 6.0978 36 1 6.6022 0.5669 8.3993 37 1 1.3316 1.0412 8.2886 38 1 0.9489 -0.5482 7.4346 39 1 2.9651 -1.6255 8.5350 40 1 3.3487 -0.0367 9.3892 41 1 2.8631 1.0229 -1.9300 42 1 2.5956 -0.3391 -4.2171 43 1 4.2437 -0.2517 -3.5544 44 1 4.6317 -2.2881 -4.8671 45 1 3.7595 -3.7770 -4.4302 46 1 2.9187 -2.4790 -5.3115 47 1 1.1766 -2.1843 -3.4607 48 1 1.9539 -3.6893 -2.9083 49 1 2.4225 -2.7437 -0.7300 50 1 0.7186 -2.3813 -1.0912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329817501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:15 Heat of formation + Delta-G solvation = -48.368153 kcal Electronic energy + Delta-G solvation = -28907.199059 eV Core-core repulsion = 24934.481019 eV Total energy + Delta-G solvation = -3972.718040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76906 -40.39815 -39.55673 -38.46388 -37.28067 -35.17077 -34.07758 -33.94577 -31.85980 -31.32606 -28.73839 -27.73788 -27.42011 -25.48295 -24.90733 -23.64232 -22.92546 -22.20964 -21.41071 -21.14424 -19.74813 -18.55990 -18.12319 -17.86037 -17.23784 -16.95923 -16.62351 -16.52111 -16.10429 -15.97897 -15.79231 -15.62376 -15.15113 -15.04579 -14.80875 -14.45060 -14.40693 -13.88649 -13.73133 -13.60979 -13.49684 -13.45328 -13.19201 -13.01748 -12.95766 -12.83281 -12.72390 -12.47969 -12.39718 -12.38460 -12.01348 -11.90109 -11.42298 -11.40684 -10.98152 -10.76612 -10.45646 -10.37134 -10.11915 -9.97339 -9.90674 -9.28849 -8.10961 -6.24486 0.37466 0.95618 1.40161 1.43935 1.52077 1.55592 2.17033 2.41407 2.74921 3.00209 3.16613 3.40992 3.46429 3.60568 3.74279 4.11441 4.17673 4.19911 4.23261 4.33272 4.42989 4.45595 4.51580 4.53938 4.62623 4.64659 4.65897 4.68905 4.76796 4.84981 4.89496 4.92023 4.96181 5.02294 5.03828 5.13367 5.20522 5.22979 5.28594 5.35132 5.39119 5.52909 5.68500 5.76998 5.87894 6.00569 6.05852 6.16268 6.35576 6.45737 6.77298 6.82928 7.00055 7.45138 8.95636 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002354 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.260174 B =11893.991234 C =12396.023398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.175 3.825 3 H 0.081 0.919 4 N -0.682 5.682 5 C 0.516 3.484 6 O -0.540 6.540 7 C 0.495 3.505 8 O -0.556 6.556 9 N -0.669 5.669 10 C 0.175 3.825 11 C -0.004 4.004 12 C -0.507 4.507 13 H 0.058 0.942 14 C 0.028 3.972 15 N -0.903 5.903 16 Si 0.945 3.055 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.270 1.270 20 C -0.180 4.180 21 C -0.145 4.145 22 C -0.129 4.129 23 C -0.142 4.142 24 C 0.084 3.916 25 N -0.559 5.559 26 C 0.024 3.976 27 C 0.055 3.945 28 C -0.082 4.082 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.417 0.583 33 H 0.415 0.585 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.044 0.956 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -5.393 -24.598 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.072 3.928 3 H 0.099 0.901 4 N -0.335 5.335 5 C 0.296 3.704 6 O -0.417 6.417 7 C 0.276 3.724 8 O -0.436 6.436 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.004 4.004 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.771 3.229 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.217 4.217 21 C -0.184 4.184 22 C -0.130 4.130 23 C -0.161 4.161 24 C -0.043 4.043 25 N -0.284 5.284 26 C -0.124 4.124 27 C -0.073 4.073 28 C -0.120 4.120 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.254 0.746 33 H 0.251 0.749 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.204 -5.562 -24.237 26.515 hybrid contribution 0.403 1.100 -0.071 1.174 sum -8.801 -4.462 -24.308 26.234 Atomic orbital electron populations 1.22127 0.92940 1.03384 1.02824 1.20249 0.95468 0.95943 0.81108 0.90053 1.45858 1.64412 1.15101 1.08097 1.20007 0.78742 0.86681 0.84976 1.90748 1.49664 1.16061 1.85260 1.20365 0.80308 0.86581 0.85160 1.90698 1.49443 1.17441 1.85972 1.45794 1.57354 1.20474 1.08238 1.20832 0.96007 0.94069 0.83956 1.19075 0.95896 0.95805 0.89673 1.20649 0.95978 0.93195 1.44669 0.92426 1.25637 0.98229 0.98827 0.94654 1.70085 1.14270 1.29859 1.39858 0.85753 0.77803 0.80688 0.78633 1.20036 1.21397 1.19503 1.23021 0.91060 1.01882 1.05781 1.22396 1.01262 0.97245 0.97457 1.20906 1.00388 0.96620 0.95060 1.22318 0.97135 1.00268 0.96374 1.20996 1.01338 0.87267 0.94705 1.62431 1.29527 1.05718 1.30709 1.22412 1.00717 1.00528 0.88739 1.22237 0.89323 1.00754 0.94998 1.20562 1.02612 0.91566 0.97219 0.89614 0.90753 0.93295 0.74589 0.74882 0.94234 0.92587 0.93067 0.89904 0.89156 0.90619 0.91598 0.86456 0.92438 0.89125 0.90932 0.90683 0.94846 0.93781 0.89312 0.90661 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.33 71.98 0.67 -1.97 16 2 C 0.18 3.57 2.72 44.24 0.12 3.69 16 3 H 0.08 1.91 7.06 -2.39 -0.02 1.89 16 4 N -0.68 -17.12 5.03 -447.43 -2.25 -19.37 16 5 C 0.52 16.86 7.85 87.27 0.69 17.55 16 6 O -0.54 -19.72 16.16 -3.27 -0.05 -19.78 16 7 C 0.50 18.72 7.88 87.27 0.69 19.40 16 8 O -0.56 -22.63 16.47 -3.25 -0.05 -22.68 16 9 N -0.67 -27.03 5.46 -464.41 -2.54 -29.56 16 10 C 0.17 7.86 5.53 86.38 0.48 8.34 16 11 C 0.00 -0.18 1.47 -52.93 -0.08 -0.25 16 12 C -0.51 -26.54 8.59 25.60 0.22 -26.32 16 13 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 14 C 0.03 1.48 5.43 84.65 0.46 1.94 16 15 N -0.90 -50.76 12.65 21.45 0.27 -50.49 16 16 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 C -0.18 -7.27 9.96 30.61 0.30 -6.96 16 21 C -0.15 -6.57 9.14 30.62 0.28 -6.29 16 22 C -0.13 -2.18 4.91 -15.39 -0.08 -2.26 16 23 C -0.14 -2.29 9.53 26.69 0.25 -2.04 16 24 C 0.08 1.16 5.66 85.39 0.48 1.64 16 25 N -0.56 -8.23 4.97 -926.86 -4.61 -12.84 16 26 C 0.02 0.25 9.54 127.69 1.22 1.47 16 27 C 0.05 0.69 5.60 86.32 0.48 1.17 16 28 C -0.08 -1.18 5.42 29.81 0.16 -1.02 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.07 6.97 -2.39 -0.02 1.05 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.42 9.75 7.08 -92.71 -0.66 9.09 16 33 H 0.41 16.58 7.84 -92.71 -0.73 15.85 16 34 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 36 H 0.26 14.08 8.32 -92.70 -0.77 13.31 16 37 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.12 1.81 7.64 -2.91 -0.02 1.79 16 42 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.72 8.13 -2.38 -0.02 0.70 16 46 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.04 0.51 8.08 -2.39 -0.02 0.49 16 48 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 49 H 0.08 1.23 7.64 -2.39 -0.02 1.22 16 50 H 0.09 1.06 6.86 -2.39 -0.02 1.04 16 Total: -1.00 -63.04 409.25 -1.29 -64.33 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.44 Total: 37.05 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.35 Total: 8.10 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -9.13 Total: -112.26 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.11 Total: -42.46 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -63.04 -1.29 -64.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329817501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -63.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds