Wall clock time and date at job start Tue Mar 31 2020 18:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46920 * 136.66027 * 3 2 1 5 5 C 1.52996 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.48050 * 34.99853 * 10 9 7 12 12 C 1.53003 * 109.47378 * 274.99692 * 10 9 7 13 13 C 1.53010 * 109.47076 * 155.00017 * 10 9 7 14 14 C 1.53933 * 113.73180 * 276.72611 * 13 10 9 15 15 N 1.47956 * 86.17748 * 221.91791 * 14 13 10 16 16 C 1.46898 * 111.00087 * 137.58506 * 15 14 13 17 17 C 1.50698 * 109.47401 * 90.63869 * 16 15 14 18 18 O 1.21295 * 119.99575 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00194 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00014 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00089 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99745 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99836 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00456 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47389 * 89.99968 * 24 22 20 26 26 H 1.48498 * 109.47328 * 210.00575 * 24 22 20 27 27 H 1.48503 * 109.46862 * 329.99836 * 24 22 20 28 28 C 1.47954 * 90.76797 * 24.69196 * 15 14 13 29 29 H 4.44646 * 5.63416 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46938 * 16.65380 * 3 2 1 31 31 H 1.09001 * 109.46519 * 256.65688 * 3 2 1 32 32 H 1.08992 * 109.47056 * 59.99558 * 4 3 2 33 33 H 1.08996 * 109.46698 * 299.99674 * 4 3 2 34 34 H 1.09001 * 109.47372 * 59.99964 * 5 4 3 35 35 H 1.09004 * 109.47108 * 299.99708 * 5 4 3 36 36 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 37 37 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 38 38 H 0.96994 * 119.99756 * 0.02562 * 9 7 6 39 39 H 1.08997 * 109.46755 * 60.00147 * 12 10 9 40 40 H 1.08992 * 109.47534 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.46941 * 300.00980 * 12 10 9 42 42 H 1.09001 * 112.93115 * 48.43343 * 13 10 9 43 43 H 1.08999 * 113.75804 * 336.23805 * 14 13 10 44 44 H 1.09003 * 113.75753 * 107.60487 * 14 13 10 45 45 H 1.09004 * 109.47401 * 210.63849 * 16 15 14 46 46 H 1.09008 * 109.47233 * 330.63724 * 16 15 14 47 47 H 0.97007 * 120.00054 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00296 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.76592 * 220.99493 * 28 15 14 50 50 H 1.08997 * 113.76130 * 89.62267 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 1.0500 -0.9900 5 6 4.6855 1.0512 -0.9896 6 6 5.1950 2.1001 -1.9801 7 6 6.7021 2.1017 -1.9792 8 8 7.3088 1.3386 -1.2577 9 7 7.3755 2.9510 -2.7801 10 6 8.8405 2.9521 -2.7796 11 1 9.2047 1.9357 -2.6303 12 6 9.3495 3.8474 -1.6481 13 6 9.3506 3.4848 -4.1202 14 6 9.4027 2.4200 -5.2306 15 7 10.7065 3.0130 -5.6013 16 6 11.6931 1.9676 -5.9044 17 6 11.6442 1.6419 -7.3750 18 8 10.8645 2.2238 -8.0993 19 7 12.4668 0.7042 -7.8852 20 6 12.4227 0.4083 -9.2232 21 1 11.7285 0.9264 -9.8682 22 6 13.2704 -0.5589 -9.7491 23 7 13.2284 -0.8422 -11.0316 24 14 14.4706 -1.4555 -8.6334 25 1 13.8229 -2.6754 -8.0881 26 1 15.6760 -1.8404 -9.4106 27 1 14.8673 -0.5634 -7.5144 28 6 10.8857 3.5283 -4.2260 29 1 -1.0501 0.0000 0.0003 30 1 3.0098 -0.9837 -0.2945 31 1 3.0092 0.2380 1.0000 32 1 2.7917 2.0343 -0.6955 33 1 2.7923 0.8127 -1.9899 34 1 5.0497 0.0669 -1.2839 35 1 5.0484 1.2887 0.0105 36 1 4.8308 3.0845 -1.6861 37 1 4.8322 1.8622 -2.9800 38 1 6.8902 3.5615 -3.3568 39 1 8.9861 3.4679 -0.6931 40 1 10.4394 3.8486 -1.6480 41 1 8.9853 4.8639 -1.7973 42 1 8.8636 4.4122 -4.4217 43 1 9.4750 1.3988 -4.8566 44 1 8.6325 2.5418 -5.9922 45 1 12.6903 2.3225 -5.6438 46 1 11.4634 1.0725 -5.3262 47 1 13.0906 0.2391 -7.3059 48 1 13.8199 -1.5176 -11.3988 49 1 11.3004 4.5355 -4.1848 50 1 11.3918 2.8311 -3.5582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329984689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:03 Heat of formation + Delta-G solvation = 0.680127 kcal Electronic energy + Delta-G solvation = -27603.769548 eV Core-core repulsion = 23633.178401 eV Total energy + Delta-G solvation = -3970.591147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63327 -39.63258 -37.96150 -36.60103 -35.44028 -33.90950 -33.56889 -31.86012 -31.58723 -30.18465 -29.40900 -26.47659 -25.64963 -25.52749 -23.94802 -22.21814 -21.37278 -20.70410 -19.65400 -19.31672 -18.45733 -18.28500 -17.18873 -16.73503 -16.42152 -16.11965 -15.36089 -15.21601 -15.14748 -14.90005 -14.65592 -14.57710 -14.13291 -13.83830 -13.50657 -13.27674 -13.18081 -13.13104 -12.76298 -12.64851 -12.50805 -12.22859 -12.18586 -12.06587 -11.89302 -11.66782 -11.51968 -11.18614 -11.09223 -11.00515 -10.76861 -10.71204 -10.59635 -10.58226 -10.47674 -9.99440 -9.95432 -9.54040 -9.34680 -8.79563 -8.27515 -8.15126 -6.28927 -3.80160 2.41687 2.42242 2.46483 2.89160 3.03827 3.07931 3.16080 3.76509 3.84987 3.94531 4.11970 4.23516 4.41477 4.48714 4.50954 4.52703 4.72039 4.87061 4.90011 4.96905 5.07233 5.11212 5.15244 5.17347 5.25953 5.30430 5.33300 5.35474 5.38197 5.47069 5.55715 5.56549 5.57124 5.63816 5.65691 5.71946 5.82324 5.85621 5.94154 5.95225 5.97262 6.10876 6.30221 6.49248 7.07410 7.23788 7.25531 7.60638 8.00033 8.16747 8.63138 8.97960 9.45142 9.87242 10.84379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.001790 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.646197 B =15636.973546 C =16878.189114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.185 4.185 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.542 6.542 9 N -0.725 5.725 10 C 0.149 3.851 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.557 6.557 19 N -0.594 5.594 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.092 0.908 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 6.822 25.062 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.185 4.185 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.182 4.182 7 C 0.299 3.701 8 O -0.419 6.419 9 N -0.376 5.376 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.144 4.144 14 C -0.112 4.112 15 N -0.171 5.171 16 C -0.126 4.126 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.234 5.234 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.120 4.120 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.110 0.890 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.491 6.971 24.311 30.192 hybrid contribution 0.728 -1.164 0.981 1.688 sum -15.762 5.806 25.292 30.362 Atomic orbital electron populations 1.24935 0.96025 1.01119 1.01142 1.23223 0.94667 1.00328 1.00321 1.18770 0.84527 1.00845 1.01029 1.21562 0.95298 0.98895 0.99483 1.21347 0.93938 0.99347 0.99646 1.21693 0.91888 1.02046 1.02565 1.20737 0.90272 0.79651 0.79410 1.90707 1.70522 1.39908 1.40768 1.46112 1.07198 1.40274 1.44051 1.21040 0.79532 1.00636 0.94350 0.89435 1.22135 1.01620 0.99679 0.98484 1.23318 0.96979 1.00421 0.93710 1.24004 0.94498 0.96211 0.96465 1.68375 1.01777 1.25536 1.21415 1.22524 0.98077 0.94984 0.96968 1.19592 0.84516 0.83148 0.88650 1.90558 1.40194 1.52567 1.60505 1.42230 1.35361 1.36138 1.09720 1.19425 1.21181 1.20089 0.82558 0.86337 1.25024 0.97870 0.97370 0.95897 1.69621 1.38814 1.32613 1.11263 0.86677 0.81606 0.80522 0.80611 1.19682 1.20176 1.19538 1.23968 0.94827 1.01997 0.91196 0.76724 0.89346 0.89446 0.91493 0.91349 0.90802 0.90947 0.88893 0.88663 0.76463 0.92232 0.91396 0.92350 0.87729 0.91400 0.88993 0.89296 0.92347 0.79799 0.91663 0.89009 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.51 19.25 29.55 0.57 -0.94 16 2 C -0.19 -1.44 13.34 -37.12 -0.50 -1.94 16 3 C -0.02 -0.09 5.70 -29.51 -0.17 -0.26 16 4 C -0.11 -0.62 5.17 -26.73 -0.14 -0.76 16 5 C -0.10 -0.67 4.50 -26.73 -0.12 -0.79 16 6 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 7 C 0.51 4.71 7.79 -10.98 -0.09 4.62 16 8 O -0.54 -7.16 15.64 5.56 0.09 -7.07 16 9 N -0.72 -5.61 5.08 -53.80 -0.27 -5.89 16 10 C 0.15 1.33 2.41 -67.93 -0.16 1.17 16 11 H 0.09 0.98 7.37 -51.93 -0.38 0.59 16 12 C -0.16 -1.28 9.29 37.16 0.35 -0.93 16 13 C -0.12 -1.20 3.49 -89.68 -0.31 -1.52 16 14 C 0.02 0.23 7.51 -2.77 -0.02 0.21 16 15 N -0.45 -6.97 5.65 -239.78 -1.35 -8.32 16 16 C 0.01 0.11 5.28 -4.98 -0.03 0.09 16 17 C 0.46 10.59 7.83 -10.99 -0.09 10.50 16 18 O -0.56 -15.35 16.01 5.54 0.09 -15.26 16 19 N -0.59 -14.43 5.09 -10.96 -0.06 -14.49 16 20 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.05 13.96 55.50 0.77 -25.27 16 24 Si 0.88 19.62 27.74 -169.99 -4.71 14.90 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 28 C 0.01 0.10 6.57 -2.77 -0.02 0.09 16 29 H 0.22 0.81 7.80 -54.09 -0.42 0.39 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 2.15 8.60 -40.82 -0.35 1.80 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.50 7.43 -51.93 -0.39 0.11 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.90 7.29 -51.93 -0.38 0.53 16 44 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 46 H 0.06 0.86 7.38 -51.92 -0.38 0.48 16 47 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 LS Contribution 418.42 15.07 6.31 6.31 Total: -1.00 -36.65 418.42 -8.68 -45.34 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.41 Total: 9.04 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.13 Total: 0.71 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.91 Total: -53.97 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.18 Total: -22.33 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.65 -8.68 -45.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329984689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.019 kcal (2) G-P(sol) polarization free energy of solvation -36.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds