Wall clock time and date at job start Tue Mar 31 2020 18:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 N 1.46502 * 109.47108 * 239.99477 * 2 1 3 5 5 C 1.34775 * 119.99579 * 85.00420 * 4 2 1 6 6 O 1.21283 * 120.00177 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99746 * 180.02562 * 5 4 2 8 8 C 1.52998 * 110.34518 * 57.71290 * 7 5 4 9 9 C 1.51093 * 110.38585 * 295.30138 * 7 5 4 10 10 C 1.30531 * 111.10354 * 257.62447 * 9 7 5 11 11 C 1.51093 * 111.10414 * 0.02562 * 10 9 7 12 12 C 1.54635 * 110.38466 * 179.97438 * 7 5 4 13 13 C 1.53006 * 109.46877 * 119.99974 * 2 1 3 14 14 C 1.53936 * 113.82810 * 201.32473 * 13 2 1 15 15 N 1.47960 * 86.18161 * 138.09100 * 14 13 2 16 16 C 1.46897 * 111.00044 * 222.41548 * 15 14 13 17 17 C 1.50697 * 109.47152 * 269.35977 * 16 15 14 18 18 O 1.21295 * 120.00198 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00062 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00190 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47208 * 89.99241 * 24 22 20 26 26 H 1.48502 * 109.47075 * 209.99424 * 24 22 20 27 27 H 1.48500 * 109.47053 * 329.99742 * 24 22 20 28 28 C 1.47965 * 90.76281 * 335.30916 * 15 14 13 29 29 H 1.08998 * 109.46837 * 59.99926 * 1 2 3 30 30 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46755 * 300.00144 * 1 2 3 32 32 H 0.96993 * 120.00209 * 265.00628 * 4 2 1 33 33 H 1.08998 * 109.47458 * 60.70106 * 8 7 5 34 34 H 1.09001 * 109.47305 * 180.69955 * 8 7 5 35 35 H 1.08997 * 109.46891 * 300.69702 * 8 7 5 36 36 H 1.08000 * 124.44919 * 77.60751 * 9 7 5 37 37 H 1.08003 * 124.44538 * 179.97438 * 10 9 7 38 38 H 1.09006 * 110.38462 * 224.75102 * 11 10 9 39 39 H 1.09003 * 110.38842 * 102.37702 * 11 10 9 40 40 H 1.08994 * 111.03775 * 212.20711 * 12 7 5 41 41 H 1.08996 * 111.03806 * 336.10793 * 12 7 5 42 42 H 1.09002 * 112.94026 * 69.66417 * 13 2 1 43 43 H 1.09001 * 113.76032 * 252.40731 * 14 13 2 44 44 H 1.09002 * 113.76092 * 23.76789 * 14 13 2 45 45 H 1.09002 * 109.46883 * 29.35999 * 16 15 14 46 46 H 1.08999 * 109.47362 * 149.35667 * 16 15 14 47 47 H 0.97005 * 120.00519 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00368 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.75581 * 270.37620 * 28 15 14 50 50 H 1.08999 * 113.75871 * 139.00825 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7290 -3.5877 8 6 1.7496 -1.9222 -3.9167 9 6 4.0766 -1.1819 -3.3885 10 6 4.9112 -0.3903 -4.0054 11 6 4.1793 0.7228 -4.7183 12 6 2.7089 0.2464 -4.7861 13 6 2.0400 -0.7213 1.2493 14 6 3.4840 -0.3524 1.6345 15 7 2.9986 -0.3227 3.0319 16 6 3.5504 0.8298 3.7565 17 6 4.8439 0.4333 4.4205 18 8 5.2649 -0.6979 4.3014 19 7 5.5333 1.3361 5.1458 20 6 6.7103 0.9756 5.7495 21 1 7.0848 -0.0319 5.6441 22 6 7.4209 1.9061 6.4977 23 7 6.9651 3.1319 6.6264 24 14 9.0242 1.4147 7.3208 25 1 10.1551 1.6672 6.3921 26 1 9.2112 2.2149 8.5577 27 1 8.9808 -0.0288 7.6668 28 6 1.6207 -0.0474 2.5683 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 0.7361 -1.5709 -4.1102 34 1 2.1321 -2.4326 -4.8007 35 1 1.7400 -2.6133 -3.0739 36 1 4.3682 -2.0469 -2.8113 37 1 5.9841 -0.5142 -4.0056 38 1 4.5805 0.8588 -5.7227 39 1 4.2527 1.6503 -4.1504 40 1 2.5082 -0.2725 -5.7233 41 1 2.0201 1.0796 -4.6473 42 1 1.8527 -1.7948 1.2263 43 1 4.2070 -1.1440 1.4375 44 1 3.8037 0.6200 1.2598 45 1 3.7362 1.6442 3.0562 46 1 2.8386 1.1575 4.5141 47 1 5.1969 2.2410 5.2408 48 1 7.4613 3.7816 7.1484 49 1 1.3955 1.0143 2.4668 50 1 0.8549 -0.5953 3.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330039053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:09 Heat of formation + Delta-G solvation = -24.250886 kcal Electronic energy + Delta-G solvation = -29087.648494 eV Core-core repulsion = 25115.976257 eV Total energy + Delta-G solvation = -3971.672237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98842 -40.04424 -38.05378 -37.57491 -35.38327 -33.85299 -32.42154 -31.27370 -30.87748 -29.43226 -29.08497 -26.28678 -25.55107 -25.38668 -24.22193 -22.91202 -21.25589 -20.39748 -19.79429 -19.21033 -18.79423 -17.85306 -17.30086 -16.60852 -16.07615 -15.94464 -15.32760 -15.21180 -14.93059 -14.63563 -14.52168 -14.22798 -13.79087 -13.70310 -13.51512 -13.32675 -13.04550 -12.76695 -12.60208 -12.53893 -12.33493 -12.24415 -12.12503 -11.85586 -11.60408 -11.48242 -11.43785 -11.35405 -11.13472 -11.05535 -10.90385 -10.66369 -10.63165 -10.37374 -10.19450 -10.14328 -9.47060 -9.29149 -9.13229 -8.67934 -8.13700 -7.92748 -6.38546 -3.79282 1.84372 2.52817 2.97321 3.19503 3.27691 3.33828 3.91743 3.96829 4.12862 4.22756 4.28805 4.32764 4.53425 4.56381 4.67810 4.90040 4.99277 5.04266 5.04539 5.16788 5.18866 5.22759 5.25502 5.33441 5.35769 5.40809 5.46257 5.52130 5.53640 5.60814 5.66986 5.70519 5.71544 5.76978 5.77611 5.81531 5.93245 5.98415 6.03441 6.15870 6.18545 6.31186 6.37588 6.52593 6.61431 7.20365 7.32538 7.57900 8.06060 8.09435 8.65778 9.21709 9.58423 10.10989 10.79465 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002319 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.811464 B =12072.567761 C =13169.585860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.719 5.719 5 C 0.532 3.468 6 O -0.539 6.539 7 C -0.059 4.059 8 C -0.135 4.135 9 C -0.167 4.167 10 C -0.144 4.144 11 C -0.105 4.105 12 C -0.107 4.107 13 C -0.125 4.125 14 C 0.019 3.981 15 N -0.449 5.449 16 C 0.009 3.991 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.070 0.930 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 -6.479 -21.949 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.369 5.369 5 C 0.318 3.682 6 O -0.415 6.415 7 C -0.062 4.062 8 C -0.192 4.192 9 C -0.185 4.185 10 C -0.162 4.162 11 C -0.142 4.142 12 C -0.145 4.145 13 C -0.144 4.144 14 C -0.110 4.110 15 N -0.171 5.171 16 C -0.123 4.123 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.120 4.120 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.234 0.766 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.838 -6.762 -21.477 25.919 hybrid contribution 0.759 0.734 0.279 1.092 sum -12.080 -6.028 -21.198 25.132 Atomic orbital electron populations 1.22131 0.95007 1.02180 1.02542 1.21054 0.94132 0.97216 0.83126 0.89445 1.46024 1.67330 1.14100 1.09484 1.20318 0.76622 0.87000 0.84257 1.90676 1.50111 1.15933 1.84807 1.20644 0.94985 0.96575 0.94010 1.21791 0.98988 0.96070 1.02394 1.23037 0.92735 1.00691 1.02057 1.23436 0.99498 0.95559 0.97740 1.21435 0.94228 0.98104 1.00429 1.22487 0.97495 0.98704 0.95812 1.23314 0.96997 1.01090 0.93025 1.23965 0.96000 1.01690 0.89379 1.68377 1.01663 1.35822 1.11206 1.22483 0.97810 0.92815 0.99153 1.19693 0.86369 0.86521 0.84189 1.90514 1.70368 1.20384 1.64671 1.41884 1.21332 1.12323 1.44982 1.19690 0.97719 0.98677 1.26602 0.88002 1.25249 0.99866 0.95017 0.97893 1.69613 1.39986 1.03450 1.41465 0.85868 0.81359 0.78676 0.78451 1.20457 1.20929 1.19429 1.23958 0.94292 0.99704 0.94026 0.92252 0.92367 0.91359 0.76566 0.91969 0.91249 0.92037 0.85147 0.85318 0.90891 0.90097 0.90525 0.89182 0.87858 0.89197 0.91490 0.92481 0.89425 0.77561 0.91927 0.91210 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.31 37.16 0.35 -1.06 16 2 C 0.15 1.49 2.39 -67.92 -0.16 1.33 16 3 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 4 N -0.72 -6.58 4.94 -53.80 -0.27 -6.84 16 5 C 0.53 5.79 6.51 -10.99 -0.07 5.72 16 6 O -0.54 -7.82 15.12 5.56 0.08 -7.73 16 7 C -0.06 -0.49 0.74 -155.76 -0.12 -0.61 16 8 C -0.13 -0.82 8.39 37.16 0.31 -0.51 16 9 C -0.17 -1.36 9.37 -35.70 -0.33 -1.69 16 10 C -0.14 -1.22 10.77 -35.70 -0.38 -1.60 16 11 C -0.11 -0.90 6.81 -26.79 -0.18 -1.08 16 12 C -0.11 -0.91 6.03 -24.97 -0.15 -1.06 16 13 C -0.12 -1.33 3.47 -89.68 -0.31 -1.64 16 14 C 0.02 0.27 7.51 -2.77 -0.02 0.25 16 15 N -0.45 -7.43 5.65 -239.72 -1.35 -8.78 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.92 7.83 -10.99 -0.09 10.83 16 18 O -0.58 -16.17 16.01 5.54 0.09 -16.08 16 19 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 24 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.01 0.12 6.65 -2.76 -0.02 0.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16 32 H 0.40 2.84 7.94 -40.82 -0.32 2.51 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.31 7.50 -51.93 -0.39 -0.08 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 41 H 0.09 0.90 6.95 -51.93 -0.36 0.54 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 0.99 7.33 -51.93 -0.38 0.61 16 45 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 46 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 47 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 50 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -34.37 405.80 -9.47 -43.84 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -8.34 Total: 11.28 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.45 Total: 0.98 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.95 Total: -54.78 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.37 -9.47 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.590 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds