Wall clock time and date at job start Tue Mar 31 2020 18:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 N 1.46502 * 109.47108 * 239.99477 * 2 1 3 5 5 C 1.34775 * 119.99579 * 85.00420 * 4 2 1 6 6 O 1.21283 * 120.00177 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99746 * 180.02562 * 5 4 2 8 8 C 1.52998 * 110.34518 * 57.71290 * 7 5 4 9 9 C 1.51093 * 110.38585 * 295.30138 * 7 5 4 10 10 C 1.30531 * 111.10354 * 257.62447 * 9 7 5 11 11 C 1.51093 * 111.10414 * 0.02562 * 10 9 7 12 12 C 1.54635 * 110.38466 * 179.97438 * 7 5 4 13 13 C 1.53006 * 109.46877 * 119.99974 * 2 1 3 14 14 C 1.53936 * 113.82810 * 201.32473 * 13 2 1 15 15 N 1.47960 * 86.18161 * 138.09100 * 14 13 2 16 16 C 1.46897 * 111.00044 * 222.41548 * 15 14 13 17 17 C 1.50697 * 109.47152 * 269.35977 * 16 15 14 18 18 O 1.21295 * 120.00198 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00062 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00190 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47208 * 89.99241 * 24 22 20 26 26 H 1.48502 * 109.47075 * 209.99424 * 24 22 20 27 27 H 1.48500 * 109.47053 * 329.99742 * 24 22 20 28 28 C 1.47965 * 90.76281 * 335.30916 * 15 14 13 29 29 H 1.08998 * 109.46837 * 59.99926 * 1 2 3 30 30 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46755 * 300.00144 * 1 2 3 32 32 H 0.96993 * 120.00209 * 265.00628 * 4 2 1 33 33 H 1.08998 * 109.47458 * 60.70106 * 8 7 5 34 34 H 1.09001 * 109.47305 * 180.69955 * 8 7 5 35 35 H 1.08997 * 109.46891 * 300.69702 * 8 7 5 36 36 H 1.08000 * 124.44919 * 77.60751 * 9 7 5 37 37 H 1.08003 * 124.44538 * 179.97438 * 10 9 7 38 38 H 1.09006 * 110.38462 * 224.75102 * 11 10 9 39 39 H 1.09003 * 110.38842 * 102.37702 * 11 10 9 40 40 H 1.08994 * 111.03775 * 212.20711 * 12 7 5 41 41 H 1.08996 * 111.03806 * 336.10793 * 12 7 5 42 42 H 1.09002 * 112.94026 * 69.66417 * 13 2 1 43 43 H 1.09001 * 113.76032 * 252.40731 * 14 13 2 44 44 H 1.09002 * 113.76092 * 23.76789 * 14 13 2 45 45 H 1.09002 * 109.46883 * 29.35999 * 16 15 14 46 46 H 1.08999 * 109.47362 * 149.35667 * 16 15 14 47 47 H 0.97005 * 120.00519 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00368 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.75581 * 270.37620 * 28 15 14 50 50 H 1.08999 * 113.75871 * 139.00825 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7290 -3.5877 8 6 1.7496 -1.9222 -3.9167 9 6 4.0766 -1.1819 -3.3885 10 6 4.9112 -0.3903 -4.0054 11 6 4.1793 0.7228 -4.7183 12 6 2.7089 0.2464 -4.7861 13 6 2.0400 -0.7213 1.2493 14 6 3.4840 -0.3524 1.6345 15 7 2.9986 -0.3227 3.0319 16 6 3.5504 0.8298 3.7565 17 6 4.8439 0.4333 4.4205 18 8 5.2649 -0.6979 4.3014 19 7 5.5333 1.3361 5.1458 20 6 6.7103 0.9756 5.7495 21 1 7.0848 -0.0319 5.6441 22 6 7.4209 1.9061 6.4977 23 7 6.9651 3.1319 6.6264 24 14 9.0242 1.4147 7.3208 25 1 10.1551 1.6672 6.3921 26 1 9.2112 2.2149 8.5577 27 1 8.9808 -0.0288 7.6668 28 6 1.6207 -0.0474 2.5683 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 0.7361 -1.5709 -4.1102 34 1 2.1321 -2.4326 -4.8007 35 1 1.7400 -2.6133 -3.0739 36 1 4.3682 -2.0469 -2.8113 37 1 5.9841 -0.5142 -4.0056 38 1 4.5805 0.8588 -5.7227 39 1 4.2527 1.6503 -4.1504 40 1 2.5082 -0.2725 -5.7233 41 1 2.0201 1.0796 -4.6473 42 1 1.8527 -1.7948 1.2263 43 1 4.2070 -1.1440 1.4375 44 1 3.8037 0.6200 1.2598 45 1 3.7362 1.6442 3.0562 46 1 2.8386 1.1575 4.5141 47 1 5.1969 2.2410 5.2408 48 1 7.4613 3.7816 7.1484 49 1 1.3955 1.0143 2.4668 50 1 0.8549 -0.5953 3.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330039053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:08 Heat of formation + Delta-G solvation = -49.452352 kcal Electronic energy + Delta-G solvation = -29088.741312 eV Core-core repulsion = 25115.976257 eV Total energy + Delta-G solvation = -3972.765054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84050 -41.13491 -39.68757 -38.60435 -36.37129 -35.90238 -33.37459 -33.12887 -31.82479 -30.52663 -29.77608 -27.59826 -26.94633 -26.03165 -25.59722 -23.92429 -22.20905 -21.24006 -20.99983 -20.58152 -19.92446 -19.59898 -18.09571 -17.80722 -17.49156 -16.75559 -16.59264 -16.51641 -16.35186 -15.83780 -15.69289 -15.55985 -15.17763 -14.84656 -14.53255 -14.22278 -14.02515 -13.95306 -13.69758 -13.53607 -13.39942 -13.22155 -12.99764 -12.87488 -12.77847 -12.71647 -12.67302 -12.43969 -12.17054 -12.14401 -12.09181 -11.84554 -11.82447 -11.65932 -11.65025 -11.51307 -10.97312 -10.39500 -10.13299 -10.02989 -9.85633 -9.61410 -8.48183 -5.97303 1.17227 1.36338 1.39575 1.52883 1.71149 2.03917 2.19904 2.27423 2.76943 3.17696 3.30091 3.45257 3.49487 3.62551 3.63867 3.83827 4.06493 4.13631 4.16107 4.22011 4.27897 4.34284 4.41118 4.45174 4.47237 4.49899 4.52130 4.55979 4.75407 4.78171 4.80224 4.82765 4.83480 4.91386 5.00681 5.01935 5.11319 5.19780 5.23091 5.32422 5.34107 5.38473 5.42266 5.51981 5.56878 5.88634 5.89906 6.07316 6.56816 6.58919 7.11247 7.26683 7.54628 8.10936 8.69470 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002319 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.811464 B =12072.567761 C =13169.585860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.062 0.938 4 N -0.709 5.709 5 C 0.527 3.473 6 O -0.581 6.581 7 C -0.058 4.058 8 C -0.131 4.131 9 C -0.167 4.167 10 C -0.157 4.157 11 C -0.108 4.108 12 C -0.109 4.109 13 C -0.097 4.097 14 C 0.011 3.989 15 N -0.480 5.480 16 C 0.022 3.978 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.016 3.984 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.412 0.588 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.083 0.917 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 -7.540 -22.329 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.081 0.919 4 N -0.360 5.360 5 C 0.315 3.685 6 O -0.461 6.461 7 C -0.061 4.061 8 C -0.189 4.189 9 C -0.185 4.185 10 C -0.175 4.175 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.118 4.118 15 N -0.203 5.203 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.113 4.113 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.744 -7.829 -21.858 26.981 hybrid contribution 1.021 1.072 0.381 1.528 sum -12.724 -6.757 -21.478 25.862 Atomic orbital electron populations 1.22068 0.93461 1.03271 1.02350 1.20917 0.95152 0.95865 0.83088 0.91949 1.45961 1.66604 1.14620 1.08848 1.20813 0.75931 0.86585 0.85205 1.90659 1.52073 1.17858 1.85529 1.20676 0.95632 0.97154 0.92607 1.21803 0.98304 0.95187 1.03579 1.23230 0.92392 1.01042 1.01845 1.23613 1.00184 0.95542 0.98129 1.21443 0.94717 0.97293 1.01020 1.22503 0.96810 0.98378 0.96937 1.23128 0.93672 1.01985 0.92819 1.23966 0.98035 1.00864 0.88937 1.68345 1.04370 1.35430 1.12129 1.22357 0.94822 0.93946 0.99809 1.20799 0.87703 0.85580 0.82974 1.90474 1.71877 1.22141 1.65857 1.41975 1.21188 1.12806 1.45514 1.19655 0.99565 0.98244 1.28821 0.90435 1.26061 1.02783 0.94811 0.97726 1.69675 1.41116 1.04025 1.41501 0.84923 0.77278 0.78229 0.77880 1.19608 1.19392 1.19714 1.24081 0.92068 1.01019 0.94114 0.93685 0.90575 0.90357 0.75087 0.92104 0.89925 0.90647 0.83617 0.84356 0.89374 0.92393 0.88476 0.91250 0.86091 0.90962 0.92257 0.90933 0.87336 0.77116 0.91287 0.89890 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.31 71.98 0.67 -1.67 16 2 C 0.15 2.87 2.39 44.99 0.11 2.98 16 3 H 0.06 1.52 7.42 -2.39 -0.02 1.50 16 4 N -0.71 -12.04 4.94 -442.51 -2.19 -14.23 16 5 C 0.53 11.26 6.51 87.66 0.57 11.83 16 6 O -0.58 -17.34 15.12 -3.04 -0.05 -17.39 16 7 C -0.06 -0.90 0.74 -52.99 -0.04 -0.94 16 8 C -0.13 -1.30 8.39 71.98 0.60 -0.69 16 9 C -0.17 -2.49 9.37 26.25 0.25 -2.25 16 10 C -0.16 -2.54 10.77 26.25 0.28 -2.25 16 11 C -0.11 -1.85 6.81 30.55 0.21 -1.64 16 12 C -0.11 -1.80 6.03 31.73 0.19 -1.61 16 13 C -0.10 -1.86 3.47 -10.14 -0.04 -1.89 16 14 C 0.01 0.31 7.51 86.41 0.65 0.96 16 15 N -0.48 -15.37 5.65 -912.35 -5.15 -20.53 16 16 C 0.02 0.80 5.28 85.56 0.45 1.26 16 17 C 0.44 21.96 7.83 87.66 0.69 22.65 16 18 O -0.62 -35.65 16.01 -3.08 -0.05 -35.70 16 19 N -0.58 -30.70 5.29 -306.98 -1.62 -32.33 16 20 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 24 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.02 0.33 6.65 86.41 0.57 0.91 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.05 7.51 -2.39 -0.02 1.03 16 32 H 0.41 4.92 7.94 -92.71 -0.74 4.19 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.53 7.50 -2.39 -0.02 0.52 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.17 7.91 -2.39 -0.02 1.15 16 41 H 0.07 1.45 6.95 -2.39 -0.02 1.43 16 42 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 1.76 7.33 -2.39 -0.02 1.75 16 45 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 46 H 0.11 3.41 8.08 -2.39 -0.02 3.39 16 47 H 0.40 19.97 7.90 -92.70 -0.73 19.24 16 48 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.08 1.57 7.88 -2.39 -0.02 1.55 16 50 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.65 405.80 -0.82 -77.48 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.52 Total: 38.83 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.45 Total: 8.67 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -8.68 Total: -117.66 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.10 Total: -53.09 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -76.65 -0.82 -77.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.025 kcal (2) G-P(sol) polarization free energy of solvation -76.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds