Wall clock time and date at job start Tue Mar 31 2020 18:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 N 1.46502 * 109.47108 * 239.99477 * 2 1 3 5 5 C 1.34775 * 119.99579 * 85.00420 * 4 2 1 6 6 O 1.21283 * 120.00177 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99746 * 180.02562 * 5 4 2 8 8 C 1.52998 * 110.34441 * 300.69818 * 7 5 4 9 9 C 1.51103 * 110.38715 * 62.99131 * 7 5 4 10 10 C 1.30717 * 110.99265 * 135.15975 * 9 7 5 11 11 C 1.51103 * 111.13974 * 0.15699 * 10 9 7 12 12 C 1.54637 * 104.72259 * 343.46295 * 11 10 9 13 13 C 1.53006 * 109.46877 * 119.99974 * 2 1 3 14 14 C 1.53936 * 113.82810 * 201.32473 * 13 2 1 15 15 N 1.47960 * 86.18161 * 138.09100 * 14 13 2 16 16 C 1.46897 * 111.00044 * 222.41548 * 15 14 13 17 17 C 1.50697 * 109.47152 * 269.35977 * 16 15 14 18 18 O 1.21295 * 120.00198 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00062 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00190 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00331 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99768 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47090 * 90.01099 * 24 22 20 26 26 H 1.48507 * 109.47286 * 210.00363 * 24 22 20 27 27 H 1.48497 * 109.47354 * 330.00536 * 24 22 20 28 28 C 1.47965 * 90.76281 * 335.30916 * 15 14 13 29 29 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46755 * 300.00144 * 1 2 3 31 31 H 1.08998 * 109.46837 * 59.99926 * 1 2 3 32 32 H 0.96993 * 120.00209 * 265.00628 * 4 2 1 33 33 H 1.09000 * 109.46790 * 59.30287 * 8 7 5 34 34 H 1.09001 * 109.46956 * 179.30141 * 8 7 5 35 35 H 1.08995 * 109.47334 * 299.29759 * 8 7 5 36 36 H 1.08003 * 124.44529 * 315.22396 * 9 7 5 37 37 H 1.08004 * 124.41733 * 180.02562 * 10 9 7 38 38 H 1.09002 * 110.38170 * 224.65492 * 11 10 9 39 39 H 1.08995 * 110.48333 * 102.32189 * 11 10 9 40 40 H 1.09006 * 111.03709 * 266.60537 * 12 11 10 41 41 H 1.08993 * 111.07267 * 142.68061 * 12 11 10 42 42 H 1.09002 * 112.94026 * 69.66417 * 13 2 1 43 43 H 1.09001 * 113.76032 * 252.40731 * 14 13 2 44 44 H 1.09002 * 113.76092 * 23.76789 * 14 13 2 45 45 H 1.09002 * 109.46883 * 29.35999 * 16 15 14 46 46 H 1.08999 * 109.47362 * 149.35667 * 16 15 14 47 47 H 0.97005 * 120.00519 * 0.02562 * 19 17 16 48 48 H 0.96994 * 120.00359 * 179.97438 * 23 22 20 49 49 H 1.08999 * 113.75581 * 270.37620 * 28 15 14 50 50 H 1.08999 * 113.75871 * 139.00825 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7290 -3.5877 8 6 4.0448 -1.3037 -3.3381 9 6 1.6915 -1.8271 -3.9886 10 6 1.4760 -1.8129 -5.2778 11 6 2.2565 -0.7065 -5.9486 12 6 2.6719 0.2364 -4.7955 13 6 2.0400 -0.7213 1.2493 14 6 3.4840 -0.3524 1.6345 15 7 2.9986 -0.3227 3.0319 16 6 3.5504 0.8298 3.7565 17 6 4.8439 0.4333 4.4205 18 8 5.2649 -0.6979 4.3014 19 7 5.5333 1.3361 5.1458 20 6 6.7103 0.9756 5.7495 21 1 7.0848 -0.0319 5.6441 22 6 7.4209 1.9061 6.4977 23 7 8.5493 1.5607 7.0759 24 14 6.7729 3.6485 6.6805 25 1 5.8953 3.7274 7.8759 26 1 7.9130 4.5865 6.8409 27 1 5.9953 4.0170 5.4703 28 6 1.6207 -0.0474 2.5683 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 4.0058 -2.0026 -2.5026 34 1 4.3884 -1.8245 -4.2318 35 1 4.7344 -0.4933 -3.1021 36 1 1.2443 -2.5291 -3.3004 37 1 0.8268 -2.5032 -5.7959 38 1 1.6267 -0.1773 -6.6637 39 1 3.1387 -1.1095 -6.4460 40 1 1.9473 1.0406 -4.6673 41 1 3.6727 0.6364 -4.9575 42 1 1.8527 -1.7948 1.2263 43 1 4.2070 -1.1440 1.4375 44 1 3.8037 0.6200 1.2598 45 1 3.7362 1.6442 3.0562 46 1 2.8386 1.1575 4.5141 47 1 5.1969 2.2410 5.2408 48 1 9.0455 2.2104 7.5979 49 1 1.3955 1.0143 2.4668 50 1 0.8549 -0.5953 3.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330039054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:12 Heat of formation + Delta-G solvation = -17.677789 kcal Electronic energy + Delta-G solvation = -28966.333682 eV Core-core repulsion = 24994.946476 eV Total energy + Delta-G solvation = -3971.387206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00093 -40.12469 -38.26886 -37.79079 -35.44805 -33.90759 -32.35090 -31.65201 -30.87336 -29.55565 -29.16253 -26.41884 -25.82316 -25.64621 -24.11809 -22.72644 -21.20488 -20.41893 -19.88582 -19.35296 -18.91787 -18.28481 -17.49103 -16.62928 -16.11235 -15.83170 -15.57513 -15.28810 -15.00851 -14.89824 -14.57969 -14.34667 -13.76766 -13.56416 -13.39508 -13.24501 -13.11669 -12.90856 -12.66807 -12.63855 -12.48434 -12.42634 -12.18120 -12.06281 -11.93223 -11.65399 -11.59770 -11.51226 -11.21551 -11.16840 -10.98146 -10.75074 -10.69887 -10.57863 -10.00493 -9.95266 -9.53802 -9.32693 -9.31399 -8.78890 -8.26950 -8.14902 -6.28643 -3.79832 1.73551 2.47900 2.92443 3.04084 3.08225 3.16265 3.76586 3.86184 4.05095 4.12198 4.14896 4.28784 4.49758 4.54511 4.59826 4.72650 4.85158 4.92885 4.98408 5.09719 5.14926 5.17017 5.18633 5.24593 5.29688 5.33186 5.36757 5.46444 5.49750 5.51341 5.56465 5.57371 5.64800 5.71488 5.74075 5.78834 5.86989 5.91108 5.96031 5.98266 6.01975 6.12929 6.32067 6.40240 6.49867 7.08153 7.28229 7.60959 8.02139 8.17010 8.63432 8.98246 9.45422 9.87542 10.84658 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.002164 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.257368 B =12937.494554 C =13441.390914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.720 5.720 5 C 0.529 3.471 6 O -0.540 6.540 7 C -0.058 4.058 8 C -0.134 4.134 9 C -0.160 4.160 10 C -0.150 4.150 11 C -0.104 4.104 12 C -0.107 4.107 13 C -0.125 4.125 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.557 6.557 19 N -0.595 5.595 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.070 0.930 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.759 -3.694 -23.758 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.371 5.371 5 C 0.315 3.685 6 O -0.416 6.416 7 C -0.062 4.062 8 C -0.191 4.191 9 C -0.178 4.178 10 C -0.168 4.168 11 C -0.141 4.141 12 C -0.145 4.145 13 C -0.144 4.144 14 C -0.112 4.112 15 N -0.171 5.171 16 C -0.126 4.126 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.235 5.235 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.330 -4.085 -23.261 29.293 hybrid contribution -0.354 1.709 0.001 1.746 sum -17.684 -2.376 -23.260 29.315 Atomic orbital electron populations 1.22131 0.95009 1.02211 1.02525 1.21048 0.94159 0.97182 0.83136 0.89441 1.46044 1.67415 1.14117 1.09515 1.20421 0.76824 0.87002 0.84227 1.90681 1.50057 1.16055 1.84819 1.20699 0.96301 0.95126 0.94041 1.21773 0.93387 1.01322 1.02656 1.23086 0.98886 0.98782 0.97073 1.23385 0.98784 0.98905 0.95723 1.21423 0.99454 0.95056 0.98148 1.22500 1.03165 0.97221 0.91582 1.23315 0.96907 1.01195 0.93014 1.23995 0.96141 1.01806 0.89216 1.68380 1.01783 1.35571 1.11339 1.22523 0.97662 0.93097 0.99283 1.19593 0.86182 0.86396 0.83714 1.90558 1.69849 1.20006 1.63398 1.42233 1.22566 1.11351 1.47327 1.19419 0.96455 1.00724 1.26572 0.86337 1.25033 0.95897 0.98373 0.96956 1.69619 1.14381 1.35354 1.32968 0.86674 0.79262 0.84705 0.78748 1.19628 1.20202 1.19574 1.23966 0.94170 0.99725 0.94102 0.92352 0.91403 0.92234 0.76523 0.91765 0.91264 0.91578 0.85370 0.85434 0.90817 0.90372 0.89309 0.90371 0.87753 0.88997 0.91414 0.92357 0.89288 0.79801 0.91665 0.91201 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.31 37.16 0.35 -1.00 16 2 C 0.15 1.41 2.39 -67.92 -0.16 1.24 16 3 H 0.09 1.01 7.42 -51.93 -0.39 0.63 16 4 N -0.72 -6.22 4.93 -53.80 -0.27 -6.49 16 5 C 0.53 5.57 6.51 -10.99 -0.07 5.50 16 6 O -0.54 -7.72 15.16 5.56 0.08 -7.63 16 7 C -0.06 -0.47 0.73 -155.75 -0.11 -0.59 16 8 C -0.13 -0.94 8.39 37.16 0.31 -0.63 16 9 C -0.16 -1.09 9.36 -35.75 -0.33 -1.42 16 10 C -0.15 -0.94 10.78 -35.75 -0.39 -1.32 16 11 C -0.10 -0.65 6.81 -26.83 -0.18 -0.83 16 12 C -0.11 -0.88 6.00 -25.01 -0.15 -1.03 16 13 C -0.12 -1.24 3.47 -89.68 -0.31 -1.55 16 14 C 0.02 0.23 7.51 -2.77 -0.02 0.21 16 15 N -0.45 -7.02 5.65 -239.72 -1.35 -8.38 16 16 C 0.01 0.11 5.28 -4.98 -0.03 0.08 16 17 C 0.46 10.63 7.83 -10.99 -0.09 10.55 16 18 O -0.56 -15.38 16.01 5.54 0.09 -15.30 16 19 N -0.59 -14.49 5.09 -10.96 -0.06 -14.54 16 20 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.11 13.96 55.50 0.77 -25.33 16 24 Si 0.88 19.68 27.74 -169.99 -4.71 14.97 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 28 C 0.01 0.11 6.65 -2.76 -0.02 0.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.52 7.51 -51.93 -0.39 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.40 2.63 8.03 -40.82 -0.33 2.30 16 33 H 0.06 0.40 7.58 -51.93 -0.39 0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.90 7.02 -51.93 -0.36 0.53 16 41 H 0.08 0.60 7.90 -51.93 -0.41 0.19 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.07 0.92 7.33 -51.93 -0.38 0.54 16 45 H 0.06 0.88 7.38 -51.93 -0.38 0.49 16 46 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 47 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -35.59 402.90 -9.13 -44.72 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.31 Total: 10.44 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.45 Total: 1.47 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.90 Total: -54.74 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.59 -9.13 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.042 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds