Wall clock time and date at job start Tue Mar 31 2020 18:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 N 1.46502 * 109.47108 * 239.99477 * 2 1 3 5 5 C 1.34775 * 119.99579 * 85.00420 * 4 2 1 6 6 O 1.21283 * 120.00177 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99746 * 180.02562 * 5 4 2 8 8 C 1.52998 * 110.34441 * 300.69818 * 7 5 4 9 9 C 1.51103 * 110.38715 * 62.99131 * 7 5 4 10 10 C 1.30717 * 110.99265 * 135.15975 * 9 7 5 11 11 C 1.51103 * 111.13974 * 0.15699 * 10 9 7 12 12 C 1.54637 * 104.72259 * 343.46295 * 11 10 9 13 13 C 1.53006 * 109.46877 * 119.99974 * 2 1 3 14 14 C 1.53936 * 113.82810 * 201.32473 * 13 2 1 15 15 N 1.47960 * 86.18161 * 138.09100 * 14 13 2 16 16 C 1.46897 * 111.00044 * 222.41548 * 15 14 13 17 17 C 1.50697 * 109.47152 * 269.35977 * 16 15 14 18 18 O 1.21295 * 120.00198 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00062 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00190 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00331 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99768 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47090 * 90.01099 * 24 22 20 26 26 H 1.48507 * 109.47286 * 210.00363 * 24 22 20 27 27 H 1.48497 * 109.47354 * 330.00536 * 24 22 20 28 28 C 1.47965 * 90.76281 * 335.30916 * 15 14 13 29 29 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46755 * 300.00144 * 1 2 3 31 31 H 1.08998 * 109.46837 * 59.99926 * 1 2 3 32 32 H 0.96993 * 120.00209 * 265.00628 * 4 2 1 33 33 H 1.09000 * 109.46790 * 59.30287 * 8 7 5 34 34 H 1.09001 * 109.46956 * 179.30141 * 8 7 5 35 35 H 1.08995 * 109.47334 * 299.29759 * 8 7 5 36 36 H 1.08003 * 124.44529 * 315.22396 * 9 7 5 37 37 H 1.08004 * 124.41733 * 180.02562 * 10 9 7 38 38 H 1.09002 * 110.38170 * 224.65492 * 11 10 9 39 39 H 1.08995 * 110.48333 * 102.32189 * 11 10 9 40 40 H 1.09006 * 111.03709 * 266.60537 * 12 11 10 41 41 H 1.08993 * 111.07267 * 142.68061 * 12 11 10 42 42 H 1.09002 * 112.94026 * 69.66417 * 13 2 1 43 43 H 1.09001 * 113.76032 * 252.40731 * 14 13 2 44 44 H 1.09002 * 113.76092 * 23.76789 * 14 13 2 45 45 H 1.09002 * 109.46883 * 29.35999 * 16 15 14 46 46 H 1.08999 * 109.47362 * 149.35667 * 16 15 14 47 47 H 0.97005 * 120.00519 * 0.02562 * 19 17 16 48 48 H 0.96994 * 120.00359 * 179.97438 * 23 22 20 49 49 H 1.08999 * 113.75581 * 270.37620 * 28 15 14 50 50 H 1.08999 * 113.75871 * 139.00825 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7290 -3.5877 8 6 4.0448 -1.3037 -3.3381 9 6 1.6915 -1.8271 -3.9886 10 6 1.4760 -1.8129 -5.2778 11 6 2.2565 -0.7065 -5.9486 12 6 2.6719 0.2364 -4.7955 13 6 2.0400 -0.7213 1.2493 14 6 3.4840 -0.3524 1.6345 15 7 2.9986 -0.3227 3.0319 16 6 3.5504 0.8298 3.7565 17 6 4.8439 0.4333 4.4205 18 8 5.2649 -0.6979 4.3014 19 7 5.5333 1.3361 5.1458 20 6 6.7103 0.9756 5.7495 21 1 7.0848 -0.0319 5.6441 22 6 7.4209 1.9061 6.4977 23 7 8.5493 1.5607 7.0759 24 14 6.7729 3.6485 6.6805 25 1 5.8953 3.7274 7.8759 26 1 7.9130 4.5865 6.8409 27 1 5.9953 4.0170 5.4703 28 6 1.6207 -0.0474 2.5683 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 4.0058 -2.0026 -2.5026 34 1 4.3884 -1.8245 -4.2318 35 1 4.7344 -0.4933 -3.1021 36 1 1.2443 -2.5291 -3.3004 37 1 0.8268 -2.5032 -5.7959 38 1 1.6267 -0.1773 -6.6637 39 1 3.1387 -1.1095 -6.4460 40 1 1.9473 1.0406 -4.6673 41 1 3.6727 0.6364 -4.9575 42 1 1.8527 -1.7948 1.2263 43 1 4.2070 -1.1440 1.4375 44 1 3.8037 0.6200 1.2598 45 1 3.7362 1.6442 3.0562 46 1 2.8386 1.1575 4.5141 47 1 5.1969 2.2410 5.2408 48 1 9.0455 2.2104 7.5979 49 1 1.3955 1.0143 2.4668 50 1 0.8549 -0.5953 3.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330039054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:11 Heat of formation + Delta-G solvation = -45.249591 kcal Electronic energy + Delta-G solvation = -28967.529285 eV Core-core repulsion = 24994.946476 eV Total energy + Delta-G solvation = -3972.582809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81218 -41.13578 -39.81461 -38.75647 -36.38679 -35.94002 -33.77912 -33.10278 -31.73150 -30.53501 -29.75419 -27.65423 -26.93767 -26.46052 -25.48810 -23.70902 -22.08032 -21.25248 -21.17663 -20.57380 -20.24362 -19.57728 -18.20988 -17.79873 -17.46419 -16.87161 -16.62446 -16.44751 -16.30040 -16.08840 -15.55564 -15.45682 -14.99779 -14.85434 -14.47871 -14.38705 -14.24687 -13.95512 -13.86424 -13.69356 -13.54542 -13.26131 -13.05278 -12.99955 -12.75393 -12.69405 -12.59275 -12.43784 -12.23641 -12.18500 -12.00059 -11.84317 -11.82453 -11.72962 -11.64546 -11.52022 -10.78639 -10.47003 -10.25781 -10.13248 -9.85969 -9.62078 -8.42722 -6.03481 1.22877 1.28184 1.33649 1.42364 1.69836 1.94904 2.19813 2.21188 2.63065 3.11792 3.19706 3.39433 3.46708 3.60337 3.65340 3.90417 4.01823 4.06961 4.16066 4.21571 4.28571 4.32583 4.37908 4.39072 4.44547 4.46381 4.51151 4.61492 4.75422 4.76032 4.76842 4.82101 4.84642 4.95489 4.96956 5.01463 5.17257 5.18773 5.21382 5.29625 5.32723 5.41844 5.52274 5.53648 5.57102 5.89963 5.93548 6.02818 6.55903 6.58631 6.87167 7.25827 7.38619 7.96524 8.75049 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.002164 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.257368 B =12937.494554 C =13441.390914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.067 0.933 4 N -0.711 5.711 5 C 0.525 3.475 6 O -0.583 6.583 7 C -0.056 4.056 8 C -0.132 4.132 9 C -0.171 4.171 10 C -0.147 4.147 11 C -0.102 4.102 12 C -0.113 4.113 13 C -0.099 4.099 14 C 0.009 3.991 15 N -0.485 5.485 16 C 0.019 3.981 17 C 0.452 3.548 18 O -0.609 6.609 19 N -0.595 5.595 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.234 1.234 28 C 0.018 3.982 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.088 0.912 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 -2.584 -24.776 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.085 0.915 4 N -0.361 5.361 5 C 0.312 3.688 6 O -0.463 6.463 7 C -0.060 4.060 8 C -0.189 4.189 9 C -0.189 4.189 10 C -0.164 4.164 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.118 4.118 14 C -0.120 4.120 15 N -0.208 5.208 16 C -0.113 4.113 17 C 0.240 3.760 18 O -0.493 6.493 19 N -0.237 5.237 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.157 1.157 28 C -0.110 4.110 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.337 -3.005 -24.289 31.821 hybrid contribution 0.634 1.232 0.292 1.416 sum -19.703 -1.773 -23.997 31.100 Atomic orbital electron populations 1.22069 0.93636 1.03138 1.02331 1.20937 0.95040 0.96027 0.83019 0.91520 1.45991 1.66613 1.14609 1.08935 1.20894 0.76114 0.86569 0.85178 1.90658 1.52109 1.17971 1.85560 1.20712 0.97143 0.95394 0.92706 1.21774 0.92502 1.01051 1.03610 1.23166 0.99185 0.98826 0.97690 1.23617 0.98428 0.98749 0.95642 1.21442 1.00179 0.94763 0.97514 1.22495 1.02508 0.97172 0.92883 1.23130 0.93828 1.01917 0.92973 1.24005 0.97939 1.01123 0.88914 1.68335 1.04526 1.35660 1.12248 1.22458 0.94314 0.94238 1.00270 1.20927 0.87578 0.85349 0.82170 1.90530 1.71574 1.22401 1.64768 1.42079 1.21467 1.12583 1.47558 1.18992 0.98968 0.98773 1.28955 0.92777 1.26121 0.95641 1.04277 0.95456 1.69801 1.16184 1.37789 1.33734 0.85362 0.79140 0.76413 0.80577 1.17972 1.19929 1.15746 1.24084 0.91858 1.01251 0.93850 0.90830 0.90142 0.93894 0.75140 0.90947 0.89997 0.92873 0.83939 0.83470 0.90217 0.89086 0.91718 0.90394 0.86427 0.91226 0.91629 0.89843 0.86253 0.77597 0.91136 0.89352 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.31 71.98 0.67 -1.52 16 2 C 0.15 2.64 2.39 44.99 0.11 2.74 16 3 H 0.07 1.47 7.42 -2.39 -0.02 1.45 16 4 N -0.71 -11.44 4.93 -442.51 -2.18 -13.62 16 5 C 0.53 10.91 6.51 87.66 0.57 11.48 16 6 O -0.58 -17.03 15.16 -3.04 -0.05 -17.08 16 7 C -0.06 -0.87 0.73 -52.99 -0.04 -0.91 16 8 C -0.13 -1.74 8.39 71.98 0.60 -1.14 16 9 C -0.17 -2.00 9.36 26.06 0.24 -1.76 16 10 C -0.15 -1.52 10.78 26.06 0.28 -1.23 16 11 C -0.10 -1.13 6.81 30.53 0.21 -0.93 16 12 C -0.11 -1.84 6.00 31.71 0.19 -1.65 16 13 C -0.10 -1.74 3.47 -10.14 -0.04 -1.78 16 14 C 0.01 0.24 7.51 86.41 0.65 0.89 16 15 N -0.49 -14.34 5.65 -912.35 -5.15 -19.49 16 16 C 0.02 0.60 5.28 85.56 0.45 1.05 16 17 C 0.45 21.19 7.83 87.66 0.69 21.88 16 18 O -0.61 -35.04 16.01 -3.08 -0.05 -35.09 16 19 N -0.59 -28.93 5.09 -306.98 -1.56 -30.49 16 20 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 21 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 23 N -0.93 -57.15 13.96 21.66 0.30 -56.84 16 24 Si 0.97 39.59 27.74 68.60 1.90 41.50 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.23 -8.17 6.52 99.48 0.65 -7.52 16 28 C 0.02 0.33 6.65 86.41 0.57 0.91 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.95 7.51 -2.39 -0.02 0.93 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.41 4.70 8.03 -92.71 -0.74 3.95 16 33 H 0.07 0.82 7.58 -2.39 -0.02 0.80 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 1.37 7.02 -2.38 -0.02 1.36 16 41 H 0.08 1.22 7.90 -2.39 -0.02 1.20 16 42 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 1.74 7.33 -2.39 -0.02 1.72 16 45 H 0.08 2.25 7.38 -2.39 -0.02 2.23 16 46 H 0.12 3.07 8.08 -2.39 -0.02 3.05 16 47 H 0.39 15.68 5.76 -92.70 -0.53 15.15 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.09 1.36 7.88 -2.39 -0.02 1.34 16 50 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -84.49 402.90 -0.70 -85.18 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -0.39 Total: 37.16 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.48 Total: 8.78 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -8.60 Total: -120.45 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.10 Total: -52.17 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.90 Total: 41.50 kcal Total: -84.49 -0.70 -85.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.934 kcal (2) G-P(sol) polarization free energy of solvation -84.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds