Wall clock time and date at job start Tue Mar 31 2020 18:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 C 1.53004 * 110.34723 * 57.70982 * 7 5 4 9 9 C 1.51101 * 110.38566 * 295.29712 * 7 5 4 10 10 C 1.30522 * 111.10709 * 257.62614 * 9 7 5 11 11 C 1.51104 * 111.10347 * 0.02562 * 10 9 7 12 12 C 1.54627 * 104.72462 * 343.56124 * 11 10 9 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 C 1.53930 * 113.73563 * 156.72766 * 13 2 1 15 15 N 1.47961 * 86.18339 * 221.92310 * 14 13 2 16 16 C 1.46897 * 111.00105 * 137.57957 * 15 14 13 17 17 C 1.50704 * 109.47035 * 70.64800 * 16 15 14 18 18 O 1.21288 * 119.99924 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00251 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00434 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99527 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47316 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47144 * 120.00129 * 24 22 20 27 27 H 1.48509 * 109.47008 * 240.00265 * 24 22 20 28 28 C 1.47963 * 90.76057 * 24.68905 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 1.09001 * 109.46542 * 60.69912 * 8 7 5 34 34 H 1.09001 * 109.46462 * 180.70068 * 8 7 5 35 35 H 1.08995 * 109.46880 * 300.69927 * 8 7 5 36 36 H 1.07997 * 124.44456 * 77.60743 * 9 7 5 37 37 H 1.07997 * 124.44865 * 179.97438 * 10 9 7 38 38 H 1.08995 * 110.38428 * 224.74841 * 11 10 9 39 39 H 1.08999 * 110.38545 * 102.37336 * 11 10 9 40 40 H 1.09008 * 111.04151 * 266.60207 * 12 11 10 41 41 H 1.09002 * 111.07337 * 142.68473 * 12 11 10 42 42 H 1.08997 * 112.94014 * 288.43706 * 13 2 1 43 43 H 1.08999 * 113.76042 * 336.24067 * 14 13 2 44 44 H 1.09003 * 113.75951 * 107.61073 * 14 13 2 45 45 H 1.09006 * 109.47135 * 190.63965 * 16 15 14 46 46 H 1.08997 * 109.47429 * 310.64257 * 16 15 14 47 47 H 0.97006 * 119.99911 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99923 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76056 * 220.99334 * 28 15 14 50 50 H 1.09007 * 113.75691 * 89.62863 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 6 4.0281 -1.3372 3.3255 9 6 1.6709 -1.7992 4.0131 10 6 0.9566 -1.4052 5.0319 11 6 1.3386 -0.0060 5.4557 12 6 2.7089 0.2472 4.7855 13 6 2.0400 -0.7213 -1.2492 14 6 3.4670 -0.3155 -1.6597 15 7 2.9605 -0.3148 -3.0500 16 6 3.4682 0.8452 -3.7946 17 6 4.9420 0.6689 -4.0554 18 8 5.5133 -0.3251 -3.6594 19 7 5.6255 1.6161 -4.7277 20 6 6.9663 1.4559 -4.9645 21 1 7.4750 0.5708 -4.6119 22 6 7.6709 2.4323 -5.6581 23 7 7.0519 3.5089 -6.0875 24 14 9.4977 2.2137 -5.9813 25 1 9.9527 0.9255 -5.3993 26 1 9.7444 2.2104 -7.4456 27 1 10.2484 3.3317 -5.3553 28 6 1.5822 -0.0740 -2.5687 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 4.7326 -0.5448 3.0730 34 1 4.3715 -1.8576 4.2196 35 1 3.9624 -2.0427 2.4972 36 1 1.5753 -2.7636 3.5364 37 1 0.1922 -2.0007 5.5089 38 1 1.4301 0.0505 6.5403 39 1 0.6021 0.7135 5.0979 40 1 3.5271 -0.0096 5.4584 41 1 2.7941 1.2794 4.4455 42 1 1.8823 -1.7992 -1.2115 43 1 3.7640 0.6696 -1.3001 44 1 4.2152 -1.0840 -1.4654 45 1 2.9387 0.9278 -4.7439 46 1 3.3085 1.7509 -3.2096 47 1 5.1687 2.4112 -5.0441 48 1 7.5438 4.1907 -6.5714 49 1 0.8245 -0.6494 -3.1005 50 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330039055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:15 Heat of formation + Delta-G solvation = -25.216077 kcal Electronic energy + Delta-G solvation = -29163.833792 eV Core-core repulsion = 25192.119702 eV Total energy + Delta-G solvation = -3971.714091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96483 -40.04900 -38.07254 -37.55548 -35.34136 -33.88611 -32.40085 -31.29985 -30.84568 -29.40324 -29.10506 -26.27338 -25.48947 -25.34247 -24.20425 -22.90039 -21.22674 -20.40030 -19.76482 -19.19166 -18.79544 -17.87378 -17.31906 -16.60902 -16.09403 -15.85955 -15.32921 -15.20462 -14.92844 -14.62201 -14.53999 -14.12169 -13.78154 -13.67727 -13.49780 -13.29391 -13.03450 -12.72544 -12.51720 -12.48575 -12.27117 -12.22542 -12.13849 -11.80426 -11.71420 -11.47447 -11.44674 -11.41728 -11.09626 -11.08686 -10.86843 -10.60675 -10.57503 -10.33969 -10.21831 -10.13947 -9.50721 -9.23152 -9.16891 -8.62214 -8.20987 -7.95566 -6.41009 -3.81740 1.79352 2.55414 3.01777 3.16660 3.27037 3.34273 3.90170 4.00501 4.13937 4.21264 4.28032 4.39048 4.56055 4.61127 4.70156 4.91697 4.95730 5.05546 5.08877 5.18424 5.21462 5.23662 5.27931 5.36990 5.39941 5.43890 5.49562 5.53429 5.59049 5.62250 5.72031 5.74704 5.76897 5.80031 5.84992 5.88242 5.99918 6.00042 6.08272 6.11101 6.26581 6.27645 6.42490 6.47805 6.64520 7.22597 7.36608 7.55906 8.06668 8.10222 8.62173 9.18747 9.55099 10.06742 10.76894 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.002287 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.738388 B =12242.068646 C =13186.243432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.718 5.718 5 C 0.532 3.468 6 O -0.538 6.538 7 C -0.059 4.059 8 C -0.138 4.138 9 C -0.163 4.163 10 C -0.148 4.148 11 C -0.104 4.104 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.029 3.971 15 N -0.454 5.454 16 C 0.010 3.990 17 C 0.444 3.556 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.009 3.991 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.090 0.910 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.005 -8.321 19.585 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.369 5.369 5 C 0.318 3.682 6 O -0.415 6.415 7 C -0.063 4.063 8 C -0.195 4.195 9 C -0.181 4.181 10 C -0.166 4.166 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.147 4.147 14 C -0.100 4.100 15 N -0.176 5.176 16 C -0.122 4.122 17 C 0.230 3.770 18 O -0.464 6.464 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.581 -8.499 19.304 25.642 hybrid contribution 0.548 0.749 -0.176 0.944 sum -14.034 -7.750 19.128 24.958 Atomic orbital electron populations 1.22128 0.95103 1.02106 1.02468 1.21053 0.94052 0.97265 0.83153 0.89415 1.46020 1.67348 1.14055 1.09478 1.20303 0.76901 0.86912 0.84072 1.90674 1.50045 1.15997 1.84786 1.20654 0.96194 0.95218 0.94185 1.21815 0.94090 1.01083 1.02516 1.23041 0.97941 0.98361 0.98729 1.23403 0.98836 0.96837 0.97550 1.21409 0.97326 0.94772 1.00574 1.22484 0.97236 1.00271 0.94609 1.23366 0.97449 1.00996 0.92934 1.23801 0.95655 1.01675 0.88859 1.68402 1.01907 1.35664 1.11599 1.22464 0.96662 0.92846 1.00257 1.19686 0.87633 0.85393 0.84324 1.90512 1.70077 1.30325 1.55443 1.41884 1.09555 1.19530 1.49229 1.19738 0.83903 1.06080 1.32995 0.87912 1.25265 1.00571 0.95227 0.96968 1.69619 1.37094 1.09141 1.38472 0.85804 0.82088 0.78458 0.78015 1.19234 1.20732 1.20764 1.23970 0.94132 0.99947 0.93964 0.91410 0.92313 0.92432 0.76585 0.91624 0.91270 0.91879 0.85296 0.85511 0.90929 0.90238 0.90437 0.89068 0.87959 0.91623 0.88898 0.89159 0.92836 0.77502 0.91930 0.89195 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.29 37.16 0.35 -1.14 16 2 C 0.15 1.58 2.42 -67.93 -0.16 1.42 16 3 H 0.09 1.14 7.37 -51.93 -0.38 0.76 16 4 N -0.72 -6.99 4.94 -53.80 -0.27 -7.26 16 5 C 0.53 6.10 6.51 -10.98 -0.07 6.03 16 6 O -0.54 -8.15 15.12 5.56 0.08 -8.06 16 7 C -0.06 -0.53 0.74 -155.76 -0.12 -0.64 16 8 C -0.14 -1.06 8.39 37.16 0.31 -0.75 16 9 C -0.16 -1.20 9.37 -35.70 -0.33 -1.54 16 10 C -0.15 -1.08 10.77 -35.69 -0.38 -1.46 16 11 C -0.10 -0.83 6.81 -26.83 -0.18 -1.01 16 12 C -0.11 -0.97 6.03 -25.02 -0.15 -1.12 16 13 C -0.13 -1.41 3.49 -89.69 -0.31 -1.73 16 14 C 0.03 0.44 6.31 -2.77 -0.02 0.43 16 15 N -0.45 -7.50 5.95 -239.72 -1.43 -8.92 16 16 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 17 C 0.44 10.70 7.59 -10.99 -0.08 10.61 16 18 O -0.58 -15.87 15.12 5.55 0.08 -15.79 16 19 N -0.57 -14.60 5.29 -10.96 -0.06 -14.65 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 24 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.01 0.11 6.59 -2.76 -0.02 0.09 16 29 H 0.07 0.58 7.43 -51.93 -0.39 0.19 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.03 7.93 -40.82 -0.32 2.71 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.43 7.49 -51.93 -0.39 0.04 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.58 7.91 -51.92 -0.41 0.17 16 41 H 0.09 0.99 6.94 -51.93 -0.36 0.63 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.07 7.60 -51.93 -0.39 0.68 16 44 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.05 0.89 7.69 -51.93 -0.40 0.49 16 47 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -33.70 404.08 -9.59 -43.28 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -8.35 Total: 11.91 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.45 Total: 1.27 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -1.03 Total: -54.95 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.70 -9.59 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.068 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds