Wall clock time and date at job start Tue Mar 31 2020 18:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 C 1.53004 * 110.34723 * 57.70982 * 7 5 4 9 9 C 1.51101 * 110.38566 * 295.29712 * 7 5 4 10 10 C 1.30522 * 111.10709 * 257.62614 * 9 7 5 11 11 C 1.51104 * 111.10347 * 0.02562 * 10 9 7 12 12 C 1.54627 * 104.72462 * 343.56124 * 11 10 9 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 C 1.53930 * 113.73563 * 156.72766 * 13 2 1 15 15 N 1.47961 * 86.18339 * 221.92310 * 14 13 2 16 16 C 1.46897 * 111.00105 * 137.57957 * 15 14 13 17 17 C 1.50704 * 109.47035 * 70.64800 * 16 15 14 18 18 O 1.21288 * 119.99924 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00251 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00434 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99527 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47316 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47144 * 120.00129 * 24 22 20 27 27 H 1.48509 * 109.47008 * 240.00265 * 24 22 20 28 28 C 1.47963 * 90.76057 * 24.68905 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 1.09001 * 109.46542 * 60.69912 * 8 7 5 34 34 H 1.09001 * 109.46462 * 180.70068 * 8 7 5 35 35 H 1.08995 * 109.46880 * 300.69927 * 8 7 5 36 36 H 1.07997 * 124.44456 * 77.60743 * 9 7 5 37 37 H 1.07997 * 124.44865 * 179.97438 * 10 9 7 38 38 H 1.08995 * 110.38428 * 224.74841 * 11 10 9 39 39 H 1.08999 * 110.38545 * 102.37336 * 11 10 9 40 40 H 1.09008 * 111.04151 * 266.60207 * 12 11 10 41 41 H 1.09002 * 111.07337 * 142.68473 * 12 11 10 42 42 H 1.08997 * 112.94014 * 288.43706 * 13 2 1 43 43 H 1.08999 * 113.76042 * 336.24067 * 14 13 2 44 44 H 1.09003 * 113.75951 * 107.61073 * 14 13 2 45 45 H 1.09006 * 109.47135 * 190.63965 * 16 15 14 46 46 H 1.08997 * 109.47429 * 310.64257 * 16 15 14 47 47 H 0.97006 * 119.99911 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99923 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76056 * 220.99334 * 28 15 14 50 50 H 1.09007 * 113.75691 * 89.62863 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 6 4.0281 -1.3372 3.3255 9 6 1.6709 -1.7992 4.0131 10 6 0.9566 -1.4052 5.0319 11 6 1.3386 -0.0060 5.4557 12 6 2.7089 0.2472 4.7855 13 6 2.0400 -0.7213 -1.2492 14 6 3.4670 -0.3155 -1.6597 15 7 2.9605 -0.3148 -3.0500 16 6 3.4682 0.8452 -3.7946 17 6 4.9420 0.6689 -4.0554 18 8 5.5133 -0.3251 -3.6594 19 7 5.6255 1.6161 -4.7277 20 6 6.9663 1.4559 -4.9645 21 1 7.4750 0.5708 -4.6119 22 6 7.6709 2.4323 -5.6581 23 7 7.0519 3.5089 -6.0875 24 14 9.4977 2.2137 -5.9813 25 1 9.9527 0.9255 -5.3993 26 1 9.7444 2.2104 -7.4456 27 1 10.2484 3.3317 -5.3553 28 6 1.5822 -0.0740 -2.5687 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 4.7326 -0.5448 3.0730 34 1 4.3715 -1.8576 4.2196 35 1 3.9624 -2.0427 2.4972 36 1 1.5753 -2.7636 3.5364 37 1 0.1922 -2.0007 5.5089 38 1 1.4301 0.0505 6.5403 39 1 0.6021 0.7135 5.0979 40 1 3.5271 -0.0096 5.4584 41 1 2.7941 1.2794 4.4455 42 1 1.8823 -1.7992 -1.2115 43 1 3.7640 0.6696 -1.3001 44 1 4.2152 -1.0840 -1.4654 45 1 2.9387 0.9278 -4.7439 46 1 3.3085 1.7509 -3.2096 47 1 5.1687 2.4112 -5.0441 48 1 7.5438 4.1907 -6.5714 49 1 0.8245 -0.6494 -3.1005 50 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330039055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:14 Heat of formation + Delta-G solvation = -50.172310 kcal Electronic energy + Delta-G solvation = -29164.915976 eV Core-core repulsion = 25192.119702 eV Total energy + Delta-G solvation = -3972.796274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85962 -41.18170 -39.67100 -38.59653 -36.38814 -35.90938 -33.39117 -33.15315 -31.83443 -30.50459 -29.78462 -27.62489 -26.91225 -26.08475 -25.56307 -23.93478 -22.22317 -21.27208 -20.98463 -20.54651 -19.92335 -19.59991 -18.11698 -17.84790 -17.53112 -16.72619 -16.66306 -16.49763 -16.19912 -15.90221 -15.69527 -15.58630 -15.17566 -14.92715 -14.49831 -14.17912 -13.99793 -13.97265 -13.65240 -13.55009 -13.37704 -13.22042 -13.09500 -12.87241 -12.86732 -12.78418 -12.70011 -12.44042 -12.17633 -12.14199 -12.08984 -11.85269 -11.77546 -11.68293 -11.65283 -11.51770 -10.98170 -10.36099 -10.15504 -10.04469 -9.83352 -9.65816 -8.49414 -5.98391 1.20605 1.34330 1.39321 1.53841 1.68762 2.01488 2.20369 2.26854 2.80652 3.16785 3.23951 3.44240 3.48893 3.62837 3.66638 3.81266 4.06043 4.13611 4.16496 4.26816 4.28642 4.33085 4.43173 4.45311 4.46945 4.50209 4.52488 4.55304 4.75613 4.77233 4.79830 4.81533 4.86970 4.91536 4.99753 5.00177 5.10953 5.18709 5.21838 5.31112 5.32514 5.37417 5.40728 5.51650 5.56349 5.87972 5.94659 6.05842 6.55747 6.56872 7.09628 7.25741 7.52425 8.07920 8.68370 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.002287 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.738388 B =12242.068646 C =13186.243432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.059 0.941 4 N -0.709 5.709 5 C 0.526 3.474 6 O -0.583 6.583 7 C -0.059 4.059 8 C -0.136 4.136 9 C -0.164 4.164 10 C -0.148 4.148 11 C -0.106 4.106 12 C -0.114 4.114 13 C -0.099 4.099 14 C 0.021 3.979 15 N -0.478 5.478 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.271 1.271 28 C 0.017 3.983 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.413 0.587 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.115 0.885 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 -9.755 19.896 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.078 0.922 4 N -0.360 5.360 5 C 0.314 3.686 6 O -0.463 6.463 7 C -0.062 4.062 8 C -0.193 4.193 9 C -0.182 4.182 10 C -0.166 4.166 11 C -0.143 4.143 12 C -0.152 4.152 13 C -0.118 4.118 14 C -0.109 4.109 15 N -0.201 5.201 16 C -0.110 4.110 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.112 4.112 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.133 0.867 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.926 -9.945 19.604 27.145 hybrid contribution 0.949 1.210 -0.252 1.558 sum -14.977 -8.736 19.352 25.983 Atomic orbital electron populations 1.22056 0.93400 1.03274 1.02247 1.20926 0.95182 0.95803 0.83218 0.92250 1.45961 1.66619 1.14590 1.08843 1.20842 0.76179 0.86507 0.85091 1.90653 1.52075 1.17986 1.85555 1.20678 0.97183 0.95559 0.92747 1.21827 0.93018 1.00753 1.03727 1.23167 0.97439 0.98688 0.98938 1.23597 0.99146 0.96247 0.97574 1.21416 0.96185 0.95220 1.01454 1.22503 0.98549 0.98891 0.95218 1.23192 0.93715 1.02074 0.92851 1.23736 0.97746 1.00219 0.89155 1.68407 1.04609 1.35135 1.11940 1.22359 0.92263 0.94422 1.01942 1.20748 0.89976 0.84098 0.82438 1.90477 1.71683 1.31708 1.56468 1.41971 1.09132 1.20189 1.49999 1.19682 0.85391 1.06168 1.34923 0.90387 1.26072 1.04739 0.94582 0.96045 1.69679 1.38701 1.09476 1.38339 0.84859 0.76770 0.78290 0.78341 1.19765 1.19437 1.19580 1.24100 0.92052 1.01232 0.93800 0.90231 0.93983 0.90482 0.75062 0.93364 0.89623 0.90825 0.83046 0.83315 0.89344 0.91961 0.88996 0.91807 0.85861 0.93356 0.91236 0.87153 0.91191 0.77081 0.91273 0.86659 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.29 71.98 0.67 -1.82 16 2 C 0.15 3.09 2.42 44.99 0.11 3.20 16 3 H 0.06 1.57 7.37 -2.39 -0.02 1.56 16 4 N -0.71 -13.18 4.94 -442.53 -2.19 -15.37 16 5 C 0.53 12.16 6.51 87.66 0.57 12.73 16 6 O -0.58 -18.51 15.12 -3.01 -0.05 -18.56 16 7 C -0.06 -1.00 0.74 -52.99 -0.04 -1.04 16 8 C -0.14 -1.99 8.39 71.98 0.60 -1.38 16 9 C -0.16 -2.07 9.37 26.27 0.25 -1.82 16 10 C -0.15 -1.84 10.77 26.27 0.28 -1.56 16 11 C -0.11 -1.63 6.81 30.53 0.21 -1.42 16 12 C -0.11 -2.06 6.03 31.70 0.19 -1.87 16 13 C -0.10 -2.00 3.49 -10.15 -0.04 -2.04 16 14 C 0.02 0.63 6.31 86.40 0.55 1.18 16 15 N -0.48 -15.30 5.95 -912.34 -5.43 -20.73 16 16 C 0.02 0.78 5.31 85.56 0.45 1.23 16 17 C 0.44 21.65 7.59 87.66 0.67 22.32 16 18 O -0.62 -34.94 15.12 -3.06 -0.05 -34.99 16 19 N -0.58 -30.47 5.29 -306.99 -1.62 -32.10 16 20 C -0.33 -19.30 9.68 84.04 0.81 -18.48 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 24 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.02 0.35 6.59 86.41 0.57 0.92 16 29 H 0.08 1.12 7.43 -2.39 -0.02 1.11 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.41 5.48 7.93 -92.71 -0.74 4.75 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.90 7.49 -2.39 -0.02 0.88 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.34 7.91 -2.38 -0.02 1.32 16 41 H 0.06 1.50 6.94 -2.39 -0.02 1.49 16 42 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 1.64 7.60 -2.39 -0.02 1.62 16 44 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 45 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 46 H 0.07 2.27 7.69 -2.39 -0.02 2.25 16 47 H 0.40 19.93 7.90 -92.70 -0.73 19.20 16 48 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 49 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.08 1.57 7.71 -2.38 -0.02 1.55 16 Total: -1.00 -76.02 404.08 -1.22 -77.24 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.52 Total: 39.34 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.32 Total: 9.81 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -8.95 Total: -118.56 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -0.09 Total: -53.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.02 -1.22 -77.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.072 kcal (2) G-P(sol) polarization free energy of solvation -76.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds