Wall clock time and date at job start Tue Mar 31 2020 18:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 5 5 C 1.34778 * 119.99771 * 274.99826 * 4 2 1 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99935 * 180.02562 * 5 4 2 8 8 C 1.53005 * 110.34483 * 300.69981 * 7 5 4 9 9 C 1.51096 * 110.38687 * 62.98782 * 7 5 4 10 10 C 1.30531 * 111.10223 * 102.37503 * 9 7 5 11 11 C 1.51104 * 111.10468 * 0.02562 * 10 9 7 12 12 C 1.54632 * 110.38760 * 178.41446 * 7 5 4 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 C 1.53937 * 113.73032 * 158.76402 * 13 2 1 15 15 N 1.48192 * 86.10165 * 221.95851 * 14 13 2 16 16 C 1.46901 * 111.06470 * 137.52184 * 15 14 13 17 17 C 1.50707 * 109.46840 * 90.57282 * 16 15 14 18 18 O 1.21290 * 119.99780 * 359.97438 * 17 16 15 19 19 N 1.34768 * 119.99711 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99789 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99896 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00003 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99866 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00163 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47191 * 59.99997 * 24 22 20 26 26 H 1.48499 * 109.47543 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47103 * 299.99847 * 24 22 20 28 28 C 1.47956 * 90.79426 * 24.60378 * 15 14 13 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 0.96998 * 120.00630 * 95.00428 * 4 2 1 33 33 H 1.09002 * 109.46624 * 59.30031 * 8 7 5 34 34 H 1.08991 * 109.46918 * 179.29944 * 8 7 5 35 35 H 1.08996 * 109.47235 * 299.30400 * 8 7 5 36 36 H 1.08000 * 124.45402 * 282.39564 * 9 7 5 37 37 H 1.08002 * 124.44601 * 180.02562 * 10 9 7 38 38 H 1.08998 * 110.38720 * 135.24933 * 11 10 9 39 39 H 1.09003 * 110.38363 * 257.50714 * 11 10 9 40 40 H 1.09003 * 111.03944 * 23.85208 * 12 7 5 41 41 H 1.09000 * 111.03772 * 147.78973 * 12 7 5 42 42 H 1.08993 * 112.94039 * 290.33717 * 13 2 1 43 43 H 1.08993 * 113.76504 * 336.24558 * 14 13 2 44 44 H 1.09006 * 113.75634 * 107.60643 * 14 13 2 45 45 H 1.08998 * 109.46698 * 210.56604 * 16 15 14 46 46 H 1.08994 * 109.47802 * 330.57260 * 16 15 14 47 47 H 0.97004 * 120.00714 * 359.97438 * 19 17 16 48 48 H 0.97007 * 120.00068 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.75522 * 221.07798 * 28 15 14 50 50 H 1.09002 * 113.85963 * 89.73665 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 1.7292 -1.8988 3.9397 9 6 4.0633 -1.2170 3.3725 10 6 4.9252 -0.4394 3.9694 11 6 4.2300 0.6970 4.6825 12 6 2.7478 0.2562 4.7757 13 6 2.0401 -0.7213 -1.2492 14 6 3.4850 -0.3524 -1.6310 15 7 2.9995 -0.3204 -3.0308 16 6 3.5501 0.8335 -3.7543 17 6 4.8448 0.4393 -4.4175 18 8 5.2674 -0.6913 -4.2986 19 7 5.5329 1.3432 -5.1426 20 6 6.7109 0.9849 -5.7454 21 1 7.0876 -0.0216 -5.6389 22 6 7.4202 1.9166 -6.4935 23 7 6.9615 3.1412 -6.6235 24 14 9.0248 1.4282 -7.3155 25 1 8.7745 0.3180 -8.2694 26 1 9.5806 2.5940 -8.0484 27 1 9.9950 0.9841 -6.2826 28 6 1.6209 -0.0475 -2.5682 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6318 1.1527 33 1 1.6931 -2.5970 3.1035 34 1 2.1124 -2.4093 4.8231 35 1 0.7263 -1.5236 4.1433 36 1 4.3262 -2.0942 2.7999 37 1 5.9948 -0.5886 3.9554 38 1 4.6493 0.8329 5.6794 39 1 4.3181 1.6177 4.1056 40 1 2.0763 1.1037 4.6381 41 1 2.5485 -0.2495 5.7205 42 1 1.8528 -1.7948 -1.2261 43 1 3.8043 0.6193 -1.2546 44 1 4.2073 -1.1446 -1.4335 45 1 2.8384 1.1602 -4.5124 46 1 3.7341 1.6478 -3.0536 47 1 5.1947 2.2474 -5.2380 48 1 7.4568 3.7918 -7.1454 49 1 0.8564 -0.5964 -3.1182 50 1 1.3919 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330039056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:18 Heat of formation + Delta-G solvation = -24.329839 kcal Electronic energy + Delta-G solvation = -29091.942381 eV Core-core repulsion = 25120.266721 eV Total energy + Delta-G solvation = -3971.675661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.98253 -40.02585 -38.04912 -37.57113 -35.38027 -33.85109 -32.40655 -31.27462 -30.88563 -29.43073 -29.07616 -26.29137 -25.54403 -25.38542 -24.21850 -22.91244 -21.25564 -20.39722 -19.79343 -19.20635 -18.79251 -17.85140 -17.30085 -16.60525 -16.07177 -15.94358 -15.32450 -15.21345 -14.92612 -14.62955 -14.52095 -14.22573 -13.79321 -13.70328 -13.51399 -13.32390 -13.04573 -12.76668 -12.59808 -12.53762 -12.33251 -12.24104 -12.12560 -11.85359 -11.60289 -11.48323 -11.43733 -11.34938 -11.13184 -11.03773 -10.90291 -10.65899 -10.63563 -10.42105 -10.18902 -10.13988 -9.45991 -9.29188 -9.13304 -8.67583 -8.13428 -7.92638 -6.38351 -3.79097 1.84491 2.52750 2.97238 3.21946 3.27145 3.31620 3.91617 3.97020 4.13015 4.22790 4.28565 4.33048 4.53581 4.56361 4.67955 4.90096 4.99386 5.04176 5.04598 5.16860 5.18789 5.22849 5.25599 5.33471 5.35843 5.40762 5.46366 5.51940 5.53673 5.60880 5.67181 5.70579 5.71752 5.77050 5.77820 5.81622 5.93301 5.98360 6.03499 6.15777 6.18678 6.31356 6.37700 6.52583 6.61169 7.20416 7.32564 7.57821 8.06086 8.09404 8.65981 9.21751 9.58569 10.11223 10.79576 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002323 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.843480 B =12049.078270 C =13149.775582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.719 5.719 5 C 0.532 3.468 6 O -0.539 6.539 7 C -0.059 4.059 8 C -0.135 4.135 9 C -0.167 4.167 10 C -0.144 4.144 11 C -0.105 4.105 12 C -0.107 4.107 13 C -0.125 4.125 14 C 0.019 3.981 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.010 3.990 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.400 0.600 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 -6.496 21.921 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.369 5.369 5 C 0.318 3.682 6 O -0.415 6.415 7 C -0.062 4.062 8 C -0.192 4.192 9 C -0.186 4.186 10 C -0.162 4.162 11 C -0.142 4.142 12 C -0.145 4.145 13 C -0.144 4.144 14 C -0.110 4.110 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.460 6.460 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.119 0.881 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.791 -6.768 21.451 25.876 hybrid contribution 0.749 0.715 -0.282 1.073 sum -12.042 -6.054 21.169 25.096 Atomic orbital electron populations 1.22131 0.95014 1.02178 1.02542 1.21056 0.94132 0.97218 0.83133 0.89446 1.46022 1.67330 1.14101 1.09475 1.20317 0.76626 0.86992 0.84256 1.90674 1.50131 1.15936 1.84794 1.20646 0.95037 0.96533 0.94002 1.21789 0.98815 0.96296 1.02323 1.23043 0.92748 1.00622 1.02139 1.23437 0.99456 0.95571 0.97766 1.21470 0.94384 0.97938 1.00425 1.22526 0.97285 0.98790 0.95906 1.23310 0.96991 1.01089 0.93026 1.24001 0.95981 1.01689 0.89349 1.68414 1.01647 1.35779 1.11246 1.22480 0.97811 0.92808 0.99148 1.19690 0.86382 0.86511 0.84206 1.90512 1.70330 1.20435 1.64679 1.41875 1.21276 1.12349 1.44984 1.19641 0.97691 0.98704 1.26742 0.88056 1.25250 0.99874 0.95001 0.97874 1.69607 1.40073 1.03461 1.41378 0.85925 0.81314 0.77775 0.79242 1.19906 1.20988 1.19949 1.23947 0.94274 0.99714 0.94032 0.91361 0.92368 0.92253 0.76568 0.92036 0.91249 0.91978 0.85147 0.85313 0.90889 0.90128 0.89127 0.90514 0.87864 0.91477 0.89184 0.89429 0.92492 0.77559 0.91870 0.89112 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.31 37.16 0.35 -1.06 16 2 C 0.15 1.49 2.38 -67.93 -0.16 1.33 16 3 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 4 N -0.72 -6.58 4.93 -53.80 -0.27 -6.85 16 5 C 0.53 5.79 6.51 -10.98 -0.07 5.72 16 6 O -0.54 -7.82 15.11 5.56 0.08 -7.74 16 7 C -0.06 -0.49 0.73 -155.76 -0.11 -0.61 16 8 C -0.13 -0.82 8.40 37.16 0.31 -0.51 16 9 C -0.17 -1.36 9.34 -35.70 -0.33 -1.69 16 10 C -0.14 -1.22 10.78 -35.70 -0.38 -1.60 16 11 C -0.11 -0.90 6.82 -26.67 -0.18 -1.08 16 12 C -0.11 -0.91 6.06 -24.86 -0.15 -1.06 16 13 C -0.12 -1.33 3.46 -89.69 -0.31 -1.64 16 14 C 0.02 0.27 7.53 -2.63 -0.02 0.25 16 15 N -0.45 -7.43 5.65 -239.50 -1.35 -8.79 16 16 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.92 7.83 -10.99 -0.09 10.83 16 18 O -0.58 -16.18 16.01 5.55 0.09 -16.09 16 19 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 20 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 24 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 28 C 0.01 0.12 6.64 -2.76 -0.02 0.10 16 29 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 2.84 8.03 -40.82 -0.33 2.51 16 33 H 0.06 0.31 7.58 -51.93 -0.39 -0.08 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.91 6.92 -51.93 -0.36 0.55 16 41 H 0.08 0.52 7.91 -51.93 -0.41 0.11 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.99 7.33 -51.93 -0.38 0.61 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 46 H 0.06 0.95 7.39 -51.93 -0.38 0.57 16 47 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -34.34 405.98 -9.47 -43.81 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -8.34 Total: 11.33 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.44 Total: 0.98 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.95 Total: -54.79 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.34 -9.47 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.482 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds