Wall clock time and date at job start Tue Mar 31 2020 18:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 5 5 C 1.34778 * 119.99771 * 274.99826 * 4 2 1 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99935 * 180.02562 * 5 4 2 8 8 C 1.53005 * 110.34483 * 300.69981 * 7 5 4 9 9 C 1.51096 * 110.38687 * 62.98782 * 7 5 4 10 10 C 1.30531 * 111.10223 * 102.37503 * 9 7 5 11 11 C 1.51104 * 111.10468 * 0.02562 * 10 9 7 12 12 C 1.54632 * 110.38760 * 178.41446 * 7 5 4 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 C 1.53937 * 113.73032 * 158.76402 * 13 2 1 15 15 N 1.48192 * 86.10165 * 221.95851 * 14 13 2 16 16 C 1.46901 * 111.06470 * 137.52184 * 15 14 13 17 17 C 1.50707 * 109.46840 * 90.57282 * 16 15 14 18 18 O 1.21290 * 119.99780 * 359.97438 * 17 16 15 19 19 N 1.34768 * 119.99711 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99789 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99896 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00003 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99866 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00163 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47191 * 59.99997 * 24 22 20 26 26 H 1.48499 * 109.47543 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47103 * 299.99847 * 24 22 20 28 28 C 1.47956 * 90.79426 * 24.60378 * 15 14 13 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 0.96998 * 120.00630 * 95.00428 * 4 2 1 33 33 H 1.09002 * 109.46624 * 59.30031 * 8 7 5 34 34 H 1.08991 * 109.46918 * 179.29944 * 8 7 5 35 35 H 1.08996 * 109.47235 * 299.30400 * 8 7 5 36 36 H 1.08000 * 124.45402 * 282.39564 * 9 7 5 37 37 H 1.08002 * 124.44601 * 180.02562 * 10 9 7 38 38 H 1.08998 * 110.38720 * 135.24933 * 11 10 9 39 39 H 1.09003 * 110.38363 * 257.50714 * 11 10 9 40 40 H 1.09003 * 111.03944 * 23.85208 * 12 7 5 41 41 H 1.09000 * 111.03772 * 147.78973 * 12 7 5 42 42 H 1.08993 * 112.94039 * 290.33717 * 13 2 1 43 43 H 1.08993 * 113.76504 * 336.24558 * 14 13 2 44 44 H 1.09006 * 113.75634 * 107.60643 * 14 13 2 45 45 H 1.08998 * 109.46698 * 210.56604 * 16 15 14 46 46 H 1.08994 * 109.47802 * 330.57260 * 16 15 14 47 47 H 0.97004 * 120.00714 * 359.97438 * 19 17 16 48 48 H 0.97007 * 120.00068 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.75522 * 221.07798 * 28 15 14 50 50 H 1.09002 * 113.85963 * 89.73665 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 1.7292 -1.8988 3.9397 9 6 4.0633 -1.2170 3.3725 10 6 4.9252 -0.4394 3.9694 11 6 4.2300 0.6970 4.6825 12 6 2.7478 0.2562 4.7757 13 6 2.0401 -0.7213 -1.2492 14 6 3.4850 -0.3524 -1.6310 15 7 2.9995 -0.3204 -3.0308 16 6 3.5501 0.8335 -3.7543 17 6 4.8448 0.4393 -4.4175 18 8 5.2674 -0.6913 -4.2986 19 7 5.5329 1.3432 -5.1426 20 6 6.7109 0.9849 -5.7454 21 1 7.0876 -0.0216 -5.6389 22 6 7.4202 1.9166 -6.4935 23 7 6.9615 3.1412 -6.6235 24 14 9.0248 1.4282 -7.3155 25 1 8.7745 0.3180 -8.2694 26 1 9.5806 2.5940 -8.0484 27 1 9.9950 0.9841 -6.2826 28 6 1.6209 -0.0475 -2.5682 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6318 1.1527 33 1 1.6931 -2.5970 3.1035 34 1 2.1124 -2.4093 4.8231 35 1 0.7263 -1.5236 4.1433 36 1 4.3262 -2.0942 2.7999 37 1 5.9948 -0.5886 3.9554 38 1 4.6493 0.8329 5.6794 39 1 4.3181 1.6177 4.1056 40 1 2.0763 1.1037 4.6381 41 1 2.5485 -0.2495 5.7205 42 1 1.8528 -1.7948 -1.2261 43 1 3.8043 0.6193 -1.2546 44 1 4.2073 -1.1446 -1.4335 45 1 2.8384 1.1602 -4.5124 46 1 3.7341 1.6478 -3.0536 47 1 5.1947 2.2474 -5.2380 48 1 7.4568 3.7918 -7.1454 49 1 0.8564 -0.5964 -3.1182 50 1 1.3919 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330039056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:17 Heat of formation + Delta-G solvation = -49.498811 kcal Electronic energy + Delta-G solvation = -29093.033790 eV Core-core repulsion = 25120.266721 eV Total energy + Delta-G solvation = -3972.767069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83348 -41.11999 -39.68469 -38.59805 -36.36973 -35.90036 -33.37040 -33.11822 -31.83301 -30.52916 -29.76583 -27.60067 -26.94412 -26.03125 -25.59235 -23.92570 -22.21002 -21.24025 -20.99736 -20.58078 -19.92219 -19.59722 -18.09505 -17.80489 -17.48956 -16.75086 -16.58903 -16.51611 -16.35306 -15.83773 -15.69267 -15.55846 -15.17105 -14.84446 -14.53196 -14.22362 -14.02506 -13.95291 -13.69633 -13.52886 -13.40090 -13.21763 -12.99365 -12.87272 -12.78034 -12.71565 -12.67000 -12.45399 -12.17450 -12.14684 -12.09125 -11.84412 -11.82152 -11.66131 -11.65298 -11.50641 -10.97049 -10.39315 -10.13323 -10.03014 -9.85684 -9.61135 -8.47922 -5.97126 1.17509 1.38331 1.39603 1.51032 1.71023 2.04177 2.19772 2.27543 2.76703 3.17925 3.30185 3.45352 3.49554 3.62477 3.63620 3.83785 4.06534 4.13667 4.16176 4.22083 4.27948 4.34359 4.41170 4.44938 4.47091 4.49909 4.52197 4.55843 4.75446 4.78182 4.80391 4.82781 4.83485 4.91103 5.00687 5.01931 5.11144 5.19798 5.23021 5.32365 5.33868 5.38323 5.41917 5.51983 5.56917 5.88632 5.90047 6.07318 6.56784 6.59064 7.11235 7.26659 7.54746 8.11073 8.69472 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002323 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.843480 B =12049.078270 C =13149.775582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.062 0.938 4 N -0.709 5.709 5 C 0.527 3.473 6 O -0.582 6.582 7 C -0.058 4.058 8 C -0.131 4.131 9 C -0.167 4.167 10 C -0.157 4.157 11 C -0.108 4.108 12 C -0.109 4.109 13 C -0.097 4.097 14 C 0.011 3.989 15 N -0.480 5.480 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.016 3.984 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.412 0.588 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.109 0.891 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 -7.598 22.295 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.080 0.920 4 N -0.360 5.360 5 C 0.315 3.685 6 O -0.461 6.461 7 C -0.061 4.061 8 C -0.188 4.188 9 C -0.185 4.185 10 C -0.175 4.175 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.118 4.118 15 N -0.203 5.203 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.215 5.215 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.113 4.113 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.249 0.751 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.139 0.861 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.090 0.910 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.128 0.872 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.713 -7.879 21.825 26.953 hybrid contribution 1.014 1.064 -0.380 1.518 sum -12.699 -6.815 21.445 25.838 Atomic orbital electron populations 1.22068 0.93468 1.03271 1.02348 1.20918 0.95152 0.95866 0.83098 0.91955 1.45959 1.66603 1.14622 1.08838 1.20813 0.75934 0.86576 0.85205 1.90657 1.52096 1.17862 1.85517 1.20677 0.95734 0.97058 0.92606 1.21800 0.98080 0.95481 1.03489 1.23237 0.92356 1.00992 1.01904 1.23612 1.00154 0.95550 0.98171 1.21479 0.94868 0.97164 1.00987 1.22541 0.96632 0.98422 0.97049 1.23124 0.93665 1.01988 0.92816 1.24002 0.98028 1.00865 0.88896 1.68382 1.04358 1.35375 1.12176 1.22353 0.94816 0.93947 0.99806 1.20797 0.87721 0.85569 0.82987 1.90472 1.71838 1.22184 1.65858 1.41967 1.21133 1.12834 1.45519 1.19624 0.99523 0.98312 1.28938 0.90415 1.26063 1.02801 0.94792 0.97705 1.69672 1.41191 1.04030 1.41404 0.84983 0.77168 0.77922 0.78237 1.19602 1.19377 1.19683 1.24070 0.92048 1.01034 0.94127 0.90361 0.90573 0.93688 0.75087 0.90640 0.89911 0.92155 0.83562 0.84355 0.89389 0.92418 0.91218 0.88475 0.86088 0.92254 0.90932 0.87343 0.90951 0.77118 0.91278 0.87244 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.31 71.98 0.67 -1.67 16 2 C 0.15 2.87 2.38 44.99 0.11 2.98 16 3 H 0.06 1.52 7.42 -2.39 -0.02 1.50 16 4 N -0.71 -12.05 4.93 -442.53 -2.18 -14.23 16 5 C 0.53 11.27 6.51 87.66 0.57 11.84 16 6 O -0.58 -17.36 15.11 -3.03 -0.05 -17.40 16 7 C -0.06 -0.90 0.73 -52.99 -0.04 -0.94 16 8 C -0.13 -1.30 8.40 71.98 0.60 -0.70 16 9 C -0.17 -2.47 9.34 26.26 0.25 -2.23 16 10 C -0.16 -2.53 10.78 26.26 0.28 -2.25 16 11 C -0.11 -1.86 6.82 30.63 0.21 -1.65 16 12 C -0.11 -1.81 6.06 31.80 0.19 -1.61 16 13 C -0.10 -1.85 3.46 -10.15 -0.04 -1.89 16 14 C 0.01 0.31 7.53 86.37 0.65 0.96 16 15 N -0.48 -15.38 5.65 -911.65 -5.15 -20.53 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.96 7.83 87.66 0.69 22.65 16 18 O -0.62 -35.64 16.01 -3.06 -0.05 -35.68 16 19 N -0.58 -30.70 5.29 -306.99 -1.62 -32.32 16 20 C -0.33 -19.52 9.68 84.04 0.81 -18.71 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.87 13.05 21.66 0.28 -50.58 16 24 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.02 0.33 6.64 86.41 0.57 0.91 16 29 H 0.08 1.05 7.52 -2.39 -0.02 1.03 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.41 4.92 8.03 -92.71 -0.74 4.18 16 33 H 0.07 0.54 7.58 -2.39 -0.02 0.52 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.46 6.92 -2.39 -0.02 1.45 16 41 H 0.10 1.18 7.91 -2.39 -0.02 1.16 16 42 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 43 H 0.06 1.77 7.33 -2.39 -0.02 1.75 16 44 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.11 3.41 8.08 -2.39 -0.02 3.40 16 46 H 0.07 2.37 7.39 -2.39 -0.02 2.35 16 47 H 0.40 19.98 7.90 -92.70 -0.73 19.25 16 48 H 0.28 14.34 8.31 -92.70 -0.77 13.57 16 49 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.08 1.57 7.88 -2.39 -0.02 1.55 16 Total: -1.00 -76.58 405.98 -0.82 -77.40 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.53 Total: 38.97 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.45 Total: 8.64 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -8.67 Total: -117.67 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.09 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.58 -0.82 -77.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330039056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.903 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds