Wall clock time and date at job start Tue Mar 31 2020 19:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47490 * 2 1 4 4 O 1.42900 * 109.46979 * 239.99590 * 2 1 3 5 5 C 1.35722 * 117.00018 * 204.90199 * 4 2 1 6 6 C 1.39233 * 120.38311 * 354.50611 * 5 4 2 7 7 C 1.38318 * 118.44431 * 179.97438 * 6 5 4 8 8 C 1.39470 * 119.13411 * 0.02562 * 7 6 5 9 9 C 1.47922 * 119.65756 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99944 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99987 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47184 * 35.00441 * 12 11 9 14 14 C 1.52991 * 109.47267 * 275.00053 * 12 11 9 15 15 C 1.52999 * 109.46890 * 154.99897 * 12 11 9 16 16 C 1.53003 * 109.47500 * 295.00373 * 15 12 11 17 17 C 1.53006 * 109.47212 * 180.02562 * 16 15 12 18 18 N 1.46496 * 109.46916 * 180.02562 * 17 16 15 19 19 C 1.36930 * 119.99960 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00165 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00306 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00264 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99701 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47267 * 89.99669 * 23 21 19 25 25 H 1.48500 * 109.46956 * 210.00108 * 23 21 19 26 26 H 1.48504 * 109.47022 * 329.99450 * 23 21 19 27 27 N 1.32804 * 120.68586 * 0.02562 * 8 7 6 28 28 C 1.31378 * 121.69097 * 359.65721 * 27 8 7 29 29 H 1.09006 * 109.46549 * 60.00048 * 1 2 3 30 30 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46966 * 300.00330 * 1 2 3 32 32 H 1.09003 * 109.46956 * 120.00262 * 2 1 3 33 33 H 1.09000 * 109.47436 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47235 * 300.00091 * 3 2 1 35 35 H 1.09000 * 109.47285 * 59.99865 * 3 2 1 36 36 H 1.07995 * 120.77242 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.43109 * 179.97438 * 7 6 5 38 38 H 0.97000 * 120.00021 * 0.02562 * 11 9 8 39 39 H 1.09007 * 109.47399 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.47335 * 300.00295 * 14 12 11 41 41 H 1.08998 * 109.47337 * 60.00627 * 14 12 11 42 42 H 1.09004 * 109.47044 * 55.00264 * 15 12 11 43 43 H 1.09006 * 109.47234 * 174.99734 * 15 12 11 44 44 H 1.08999 * 109.46676 * 299.99538 * 16 15 12 45 45 H 1.08995 * 109.46935 * 59.99429 * 16 15 12 46 46 H 1.08995 * 109.46549 * 299.99725 * 17 16 15 47 47 H 1.08999 * 109.47215 * 59.99741 * 17 16 15 48 48 H 0.97007 * 119.99941 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00211 * 180.02562 * 22 21 19 50 50 H 1.07996 * 119.59348 * 180.30795 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2458 -1.2224 -1.0986 6 6 4.0437 -1.0223 0.0248 7 6 5.3000 -1.6004 0.0520 8 6 5.7223 -2.3587 -1.0397 9 6 7.0638 -2.9818 -1.0230 10 8 7.7916 -2.8320 -0.0611 11 7 7.4787 -3.7165 -2.0741 12 6 8.8075 -4.3330 -2.0578 13 1 9.0511 -4.6445 -1.0420 14 6 9.8459 -3.3198 -2.5434 15 6 8.8149 -5.5532 -2.9809 16 6 7.8675 -6.6186 -2.4257 17 6 7.8754 -7.8390 -3.3485 18 7 6.9677 -8.8588 -2.8171 19 6 6.8094 -10.0466 -3.4797 20 1 7.3533 -10.2315 -4.3943 21 6 5.9497 -11.0132 -2.9760 22 7 5.7971 -12.1547 -3.6132 23 14 5.0083 -10.6931 -1.3946 24 1 3.7054 -10.0563 -1.7143 25 1 4.7714 -11.9791 -0.6907 26 1 5.8000 -9.7896 -0.5215 27 7 4.9329 -2.5264 -2.0944 28 6 3.7322 -1.9960 -2.1491 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.6896 -0.4302 0.8556 37 1 5.9457 -1.4657 0.9071 38 1 6.8978 -3.8363 -2.8416 39 1 10.8346 -3.7787 -2.5317 40 1 9.6023 -3.0084 -3.5592 41 1 9.8407 -2.4506 -1.8858 42 1 8.4853 -5.2573 -3.9768 43 1 9.8249 -5.9593 -3.0382 44 1 8.1972 -6.9145 -1.4298 45 1 6.8576 -6.2124 -2.3683 46 1 7.5460 -7.5433 -4.3445 47 1 8.8853 -8.2450 -3.4053 48 1 6.4789 -8.6926 -1.9959 49 1 5.1962 -12.8299 -3.2614 50 1 3.1167 -2.1583 -3.0216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330992345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:31 Heat of formation + Delta-G solvation = -41.980972 kcal Electronic energy + Delta-G solvation = -28184.313272 eV Core-core repulsion = 24211.872200 eV Total energy + Delta-G solvation = -3972.441071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31797 -39.97646 -38.63393 -36.79084 -34.98119 -33.94224 -32.93291 -32.40686 -31.46749 -30.44010 -29.58881 -27.91644 -25.90737 -25.13230 -24.12135 -22.74713 -22.10400 -21.13892 -20.89978 -20.50382 -18.97577 -18.15186 -17.45761 -17.31335 -16.24825 -16.14910 -15.59853 -15.22609 -15.02429 -14.70287 -14.60817 -14.45213 -14.20354 -13.88203 -13.84513 -13.65744 -13.43651 -13.08796 -12.97586 -12.86702 -12.76089 -12.57663 -12.45200 -12.20679 -12.14615 -11.66827 -11.60139 -11.38869 -11.22721 -10.92745 -10.86036 -10.52086 -10.38223 -10.34937 -10.26837 -10.06314 -9.88869 -9.54530 -9.17097 -8.84477 -8.81975 -7.17220 -5.72338 -3.07033 0.37150 0.75577 2.46704 2.55335 3.01654 3.41648 3.45408 3.48648 3.56498 3.91103 4.04433 4.17824 4.23147 4.34042 4.45871 4.60907 4.63877 4.67487 4.72563 4.93336 5.01288 5.06286 5.08188 5.14790 5.16384 5.34918 5.41311 5.44492 5.47856 5.50471 5.55100 5.57998 5.58635 5.61562 5.75640 5.86872 5.91535 5.98920 6.07976 6.16030 6.18203 6.36479 6.46620 6.70494 6.82075 6.85672 7.26329 7.55611 8.04753 8.10100 8.47170 9.26810 9.99615 10.20010 11.46251 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.002534 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.783347 B =11047.290453 C =13327.451217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 C -0.182 4.182 4 O -0.298 6.298 5 C 0.106 3.894 6 C -0.179 4.179 7 C -0.067 4.067 8 C 0.035 3.965 9 C 0.576 3.424 10 O -0.540 6.540 11 N -0.701 5.701 12 C 0.139 3.861 13 H 0.090 0.910 14 C -0.162 4.162 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.157 3.843 18 N -0.758 5.758 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.416 5.416 28 C 0.077 3.923 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.411 0.589 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 32.253 7.401 33.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 C -0.239 4.239 4 O -0.210 6.210 5 C 0.057 3.943 6 C -0.205 4.205 7 C -0.088 4.088 8 C -0.103 4.103 9 C 0.361 3.639 10 O -0.418 6.418 11 N -0.352 5.352 12 C 0.035 3.965 13 H 0.108 0.892 14 C -0.220 4.220 15 C -0.161 4.161 16 C -0.168 4.168 17 C 0.030 3.970 18 N -0.403 5.403 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 N -0.127 5.127 28 C -0.085 4.085 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.248 0.752 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.670 31.663 7.066 32.776 hybrid contribution -1.361 0.609 1.676 2.243 sum -6.031 32.272 8.742 33.975 Atomic orbital electron populations 1.21870 0.91837 1.03596 1.03369 1.22589 0.95969 0.92728 0.87021 1.22408 1.02171 0.95727 1.03635 1.86134 1.28261 1.67441 1.39204 1.20448 0.85475 0.93041 0.95291 1.21746 0.95324 1.04391 0.99069 1.21941 0.95191 0.93020 0.98646 1.21060 0.95726 1.01244 0.92221 1.17703 0.84707 0.78606 0.82857 1.90778 1.55423 1.61418 1.34134 1.45954 1.18172 1.50756 1.20341 1.21116 0.81524 0.92516 1.01362 0.89231 1.22169 0.98827 0.99593 1.01426 1.21839 1.01398 0.94051 0.98792 1.21792 0.99400 0.95701 0.99955 1.20627 0.93670 0.87638 0.95066 1.42738 1.52440 1.16501 1.28649 1.19084 1.21370 0.90777 1.05965 0.89235 1.24679 0.99933 0.96170 0.98573 1.69703 1.41263 1.06946 1.40487 0.86533 0.80393 0.76985 0.84569 1.21102 1.21746 1.20354 1.67599 1.03535 1.17098 1.24499 1.22276 0.92484 0.95579 0.98202 0.91182 0.91325 0.90223 0.90603 0.91809 0.91077 0.90611 0.83542 0.83143 0.75218 0.91391 0.92376 0.92333 0.91088 0.90004 0.92054 0.91974 0.95618 0.95672 0.80737 0.93122 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.56 37.16 0.36 -0.26 16 2 C 0.07 0.38 2.85 -26.73 -0.08 0.31 16 3 C -0.18 -0.76 9.18 37.15 0.34 -0.42 16 4 O -0.30 -2.38 9.80 -18.87 -0.19 -2.56 16 5 C 0.11 0.94 6.63 -38.84 -0.26 0.68 16 6 C -0.18 -1.46 8.32 -39.18 -0.33 -1.78 16 7 C -0.07 -0.68 9.62 -39.09 -0.38 -1.05 16 8 C 0.04 0.42 6.74 -83.02 -0.56 -0.14 16 9 C 0.58 7.80 7.77 -12.29 -0.10 7.70 16 10 O -0.54 -8.54 15.98 5.32 0.09 -8.45 16 11 N -0.70 -8.52 4.52 -54.73 -0.25 -8.77 16 12 C 0.14 1.62 2.57 -67.94 -0.17 1.45 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 C -0.16 -1.62 9.48 37.15 0.35 -1.27 16 15 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 16 C -0.13 -2.03 5.22 -26.73 -0.14 -2.17 16 17 C 0.16 3.11 6.26 -4.04 -0.03 3.08 16 18 N -0.76 -18.88 5.41 -59.91 -0.32 -19.21 16 19 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -30.11 13.97 55.49 0.78 -29.34 16 23 Si 0.88 22.92 27.74 -169.99 -4.71 18.20 16 24 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 26 H -0.28 -6.83 6.52 56.52 0.37 -6.47 16 27 N -0.42 -4.80 9.53 -9.68 -0.09 -4.89 16 28 C 0.08 0.75 11.14 -17.37 -0.19 0.56 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.35 6.35 -51.93 -0.33 0.02 16 33 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.15 0.80 5.57 -52.49 -0.29 0.51 16 37 H 0.15 1.39 7.63 -52.49 -0.40 0.99 16 38 H 0.41 4.70 7.92 -40.82 -0.32 4.38 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.36 8.83 5.53 -40.82 -0.23 8.60 16 49 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 50 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 409.26 15.07 6.17 6.17 Total: -1.00 -35.27 409.26 -8.33 -43.60 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.24 Total: 7.44 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.56 Total: -2.19 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.11 Total: -62.20 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.10 Total: -11.01 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.27 -8.33 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330992345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.622 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds