Wall clock time and date at job start Tue Mar 31 2020 19:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47490 * 2 1 4 4 O 1.42900 * 109.46979 * 239.99590 * 2 1 3 5 5 C 1.35722 * 117.00018 * 204.90199 * 4 2 1 6 6 C 1.39233 * 120.38311 * 354.50611 * 5 4 2 7 7 C 1.38318 * 118.44431 * 179.97438 * 6 5 4 8 8 C 1.39470 * 119.13411 * 0.02562 * 7 6 5 9 9 C 1.47922 * 119.65756 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99944 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99987 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47184 * 35.00441 * 12 11 9 14 14 C 1.52991 * 109.47267 * 275.00053 * 12 11 9 15 15 C 1.52999 * 109.46890 * 154.99897 * 12 11 9 16 16 C 1.53003 * 109.47500 * 295.00373 * 15 12 11 17 17 C 1.53006 * 109.47212 * 180.02562 * 16 15 12 18 18 N 1.46496 * 109.46916 * 180.02562 * 17 16 15 19 19 C 1.36930 * 119.99960 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00165 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00306 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00264 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99701 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47267 * 89.99669 * 23 21 19 25 25 H 1.48500 * 109.46956 * 210.00108 * 23 21 19 26 26 H 1.48504 * 109.47022 * 329.99450 * 23 21 19 27 27 N 1.32804 * 120.68586 * 0.02562 * 8 7 6 28 28 C 1.31378 * 121.69097 * 359.65721 * 27 8 7 29 29 H 1.09006 * 109.46549 * 60.00048 * 1 2 3 30 30 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46966 * 300.00330 * 1 2 3 32 32 H 1.09003 * 109.46956 * 120.00262 * 2 1 3 33 33 H 1.09000 * 109.47436 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47235 * 300.00091 * 3 2 1 35 35 H 1.09000 * 109.47285 * 59.99865 * 3 2 1 36 36 H 1.07995 * 120.77242 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.43109 * 179.97438 * 7 6 5 38 38 H 0.97000 * 120.00021 * 0.02562 * 11 9 8 39 39 H 1.09007 * 109.47399 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.47335 * 300.00295 * 14 12 11 41 41 H 1.08998 * 109.47337 * 60.00627 * 14 12 11 42 42 H 1.09004 * 109.47044 * 55.00264 * 15 12 11 43 43 H 1.09006 * 109.47234 * 174.99734 * 15 12 11 44 44 H 1.08999 * 109.46676 * 299.99538 * 16 15 12 45 45 H 1.08995 * 109.46935 * 59.99429 * 16 15 12 46 46 H 1.08995 * 109.46549 * 299.99725 * 17 16 15 47 47 H 1.08999 * 109.47215 * 59.99741 * 17 16 15 48 48 H 0.97007 * 119.99941 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00211 * 180.02562 * 22 21 19 50 50 H 1.07996 * 119.59348 * 180.30795 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2458 -1.2224 -1.0986 6 6 4.0437 -1.0223 0.0248 7 6 5.3000 -1.6004 0.0520 8 6 5.7223 -2.3587 -1.0397 9 6 7.0638 -2.9818 -1.0230 10 8 7.7916 -2.8320 -0.0611 11 7 7.4787 -3.7165 -2.0741 12 6 8.8075 -4.3330 -2.0578 13 1 9.0511 -4.6445 -1.0420 14 6 9.8459 -3.3198 -2.5434 15 6 8.8149 -5.5532 -2.9809 16 6 7.8675 -6.6186 -2.4257 17 6 7.8754 -7.8390 -3.3485 18 7 6.9677 -8.8588 -2.8171 19 6 6.8094 -10.0466 -3.4797 20 1 7.3533 -10.2315 -4.3943 21 6 5.9497 -11.0132 -2.9760 22 7 5.7971 -12.1547 -3.6132 23 14 5.0083 -10.6931 -1.3946 24 1 3.7054 -10.0563 -1.7143 25 1 4.7714 -11.9791 -0.6907 26 1 5.8000 -9.7896 -0.5215 27 7 4.9329 -2.5264 -2.0944 28 6 3.7322 -1.9960 -2.1491 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.6896 -0.4302 0.8556 37 1 5.9457 -1.4657 0.9071 38 1 6.8978 -3.8363 -2.8416 39 1 10.8346 -3.7787 -2.5317 40 1 9.6023 -3.0084 -3.5592 41 1 9.8407 -2.4506 -1.8858 42 1 8.4853 -5.2573 -3.9768 43 1 9.8249 -5.9593 -3.0382 44 1 8.1972 -6.9145 -1.4298 45 1 6.8576 -6.2124 -2.3683 46 1 7.5460 -7.5433 -4.3445 47 1 8.8853 -8.2450 -3.4053 48 1 6.4789 -8.6926 -1.9959 49 1 5.1962 -12.8299 -3.2614 50 1 3.1167 -2.1583 -3.0216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330992345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:30 Heat of formation + Delta-G solvation = -65.883917 kcal Electronic energy + Delta-G solvation = -28185.349781 eV Core-core repulsion = 24211.872200 eV Total energy + Delta-G solvation = -3973.477581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04147 -40.83006 -39.36903 -38.00038 -36.64414 -34.43460 -34.23361 -33.49955 -32.83544 -31.62421 -30.68210 -28.22724 -27.38541 -25.92743 -24.90660 -24.34082 -22.93014 -22.48676 -21.90749 -21.42694 -19.64909 -19.60272 -18.93304 -18.09984 -17.16346 -16.73926 -16.66406 -16.32165 -16.14521 -15.83125 -15.73849 -15.64719 -15.21585 -15.03907 -14.92650 -14.60663 -14.44406 -14.15599 -13.88096 -13.58309 -13.52506 -13.50510 -13.39386 -13.15147 -13.06943 -12.86564 -12.85476 -12.49910 -12.13366 -12.05719 -12.02271 -11.88355 -11.79028 -11.76510 -11.55407 -11.35354 -10.98467 -10.97709 -10.72997 -10.15084 -9.54711 -9.30866 -8.04825 -5.37929 -0.41361 0.05176 1.35487 1.38329 1.45816 1.63951 1.91646 2.13147 2.46055 2.74241 3.11833 3.26391 3.45038 3.49399 3.66200 3.74267 3.85158 3.90226 3.95476 3.96935 4.09742 4.11020 4.16687 4.38307 4.55691 4.59677 4.64232 4.66645 4.70955 4.75805 4.81251 4.82961 4.85016 4.85539 4.87295 4.90602 5.00031 5.11455 5.19615 5.22681 5.26378 5.31028 5.34372 5.41485 5.55206 5.74035 6.11180 6.19917 6.38914 6.70573 7.05973 7.13415 7.83413 8.01595 9.16740 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.002534 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.783347 B =11047.290453 C =13327.451217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 C -0.180 4.180 4 O -0.307 6.307 5 C 0.113 3.887 6 C -0.171 4.171 7 C -0.070 4.070 8 C 0.009 3.991 9 C 0.572 3.428 10 O -0.571 6.571 11 N -0.697 5.697 12 C 0.141 3.859 13 H 0.073 0.927 14 C -0.155 4.155 15 C -0.111 4.111 16 C -0.118 4.118 17 C 0.152 3.848 18 N -0.763 5.763 19 C -0.236 4.236 20 H 0.058 0.942 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.257 1.257 27 N -0.430 5.430 28 C 0.065 3.935 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.175 0.825 37 H 0.155 0.845 38 H 0.415 0.585 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.028 0.972 47 H 0.026 0.974 48 H 0.364 0.636 49 H 0.259 0.741 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 34.653 8.727 36.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 C -0.237 4.237 4 O -0.219 6.219 5 C 0.064 3.936 6 C -0.197 4.197 7 C -0.091 4.091 8 C -0.127 4.127 9 C 0.358 3.642 10 O -0.451 6.451 11 N -0.348 5.348 12 C 0.037 3.963 13 H 0.091 0.909 14 C -0.213 4.213 15 C -0.149 4.149 16 C -0.156 4.156 17 C 0.027 3.973 18 N -0.408 5.408 19 C -0.367 4.367 20 H 0.076 0.924 21 C -0.257 4.257 22 N -0.633 5.633 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.182 1.182 27 N -0.142 5.142 28 C -0.098 4.098 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.192 0.808 37 H 0.172 0.828 38 H 0.252 0.748 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.196 0.804 49 H 0.067 0.933 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.516 34.110 8.379 35.555 hybrid contribution -1.134 -0.077 1.176 1.635 sum -6.650 34.034 9.555 35.970 Atomic orbital electron populations 1.21905 0.90962 1.03407 1.04283 1.22900 0.96699 0.93218 0.86396 1.22402 1.01839 0.95023 1.04413 1.86145 1.27620 1.67350 1.40749 1.20472 0.85856 0.92285 0.95032 1.21988 0.94291 1.03791 0.99586 1.22054 0.96004 0.92788 0.98230 1.20966 0.95477 1.02860 0.93437 1.17986 0.85178 0.78430 0.82565 1.90747 1.56452 1.62721 1.35192 1.45984 1.18384 1.50277 1.20163 1.21093 0.81854 0.92889 1.00475 0.90869 1.22100 0.99009 0.98605 1.01563 1.21763 1.01209 0.92825 0.99151 1.21656 1.00329 0.94782 0.98792 1.20844 0.92471 0.88022 0.96010 1.42808 1.53354 1.16099 1.28585 1.19086 1.20238 0.92383 1.05002 0.92374 1.25523 1.01554 0.96005 1.02592 1.69879 1.42586 1.08203 1.42668 0.85395 0.79075 0.77054 0.80179 1.20326 1.21914 1.18168 1.67530 1.04213 1.17796 1.24615 1.22577 0.92221 0.95766 0.99198 0.91430 0.92054 0.88180 0.89648 0.92268 0.91543 0.88651 0.80777 0.82766 0.74796 0.89845 0.91276 0.93604 0.89700 0.88562 0.92584 0.92293 0.95378 0.95564 0.80359 0.93267 0.79673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 71.98 0.69 -0.21 16 2 C 0.06 0.52 2.85 30.59 0.09 0.61 16 3 C -0.18 -1.07 9.18 71.98 0.66 -0.41 16 4 O -0.31 -4.34 9.80 -90.45 -0.89 -5.23 16 5 C 0.11 1.83 6.63 22.75 0.15 1.98 16 6 C -0.17 -2.47 8.32 22.53 0.19 -2.28 16 7 C -0.07 -1.35 9.62 22.59 0.22 -1.13 16 8 C 0.01 0.22 6.74 41.86 0.28 0.50 16 9 C 0.57 15.44 7.77 86.81 0.67 16.12 16 10 O -0.57 -18.21 15.98 -3.87 -0.06 -18.27 16 11 N -0.70 -16.48 4.52 -445.34 -2.01 -18.49 16 12 C 0.14 3.11 2.57 44.99 0.12 3.23 16 13 H 0.07 1.89 7.58 -2.39 -0.02 1.87 16 14 C -0.15 -2.85 9.48 71.98 0.68 -2.16 16 15 C -0.11 -2.40 4.75 30.59 0.15 -2.26 16 16 C -0.12 -3.48 5.22 30.60 0.16 -3.32 16 17 C 0.15 5.86 6.26 86.38 0.54 6.40 16 18 N -0.76 -37.41 5.41 -343.46 -1.86 -39.26 16 19 C -0.24 -14.00 10.47 84.04 0.88 -13.12 16 20 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 23 Si 0.96 47.22 27.74 68.60 1.90 49.12 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 27 N -0.43 -9.69 9.53 -184.52 -1.76 -11.45 16 28 C 0.07 1.22 11.14 85.00 0.95 2.16 16 29 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.09 0.55 6.35 -2.39 -0.02 0.53 16 33 H 0.06 0.42 6.92 -2.39 -0.02 0.40 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.18 1.43 5.57 -2.91 -0.02 1.41 16 37 H 0.15 2.77 7.63 -2.91 -0.02 2.75 16 38 H 0.41 9.14 7.92 -92.71 -0.73 8.40 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.36 17.21 5.53 -92.70 -0.51 16.70 16 49 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 50 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -76.88 409.26 2.16 -74.72 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.36 Total: 30.40 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.89 Total: 2.59 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -5.32 Total: -133.33 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.95 Total: -23.50 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -76.88 2.16 -74.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330992345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.839 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds