Wall clock time and date at job start Tue Mar 31 2020 18:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64316 * 2 1 4 4 C 1.54940 * 110.87667 * 236.73855 * 2 1 3 5 5 N 1.48540 * 103.22403 * 204.15771 * 4 2 1 6 6 C 1.46895 * 110.99453 * 159.72441 * 5 4 2 7 7 C 1.53003 * 117.49933 * 135.58461 * 6 5 4 8 8 C 1.52996 * 117.50283 * 66.96002 * 6 5 4 9 9 C 1.47893 * 105.81940 * 39.20592 * 5 4 2 10 10 C 1.53988 * 107.06292 * 334.67107 * 9 5 4 11 11 H 1.09009 * 110.39389 * 242.26376 * 10 9 5 12 12 N 1.46494 * 110.31396 * 120.14375 * 10 9 5 13 13 C 1.34772 * 120.00394 * 89.27809 * 12 10 9 14 14 O 1.21347 * 120.00195 * 0.02562 * 13 12 10 15 15 C 1.49457 * 120.00045 * 180.02562 * 13 12 10 16 16 O 1.21347 * 119.99826 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99760 * 180.02562 * 15 13 12 18 18 C 1.46495 * 119.99693 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47140 * 184.72896 * 18 17 15 20 20 C 1.50696 * 115.55162 * 294.68581 * 19 18 17 21 21 H 1.07999 * 119.99717 * 98.42217 * 20 19 18 22 22 C 1.37875 * 120.00087 * 278.41912 * 20 19 18 23 23 N 1.31512 * 119.99874 * 5.70616 * 22 20 19 24 24 Si 1.86794 * 120.00043 * 185.70496 * 22 20 19 25 25 H 1.48501 * 109.47156 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.47222 * 60.00017 * 24 22 20 27 27 H 1.48494 * 109.47413 * 299.99948 * 24 22 20 28 28 C 1.52997 * 117.51263 * 80.38597 * 19 18 17 29 29 C 1.52999 * 117.49768 * 149.01335 * 19 18 17 30 30 H 1.09002 * 109.47515 * 296.85185 * 1 2 3 31 31 H 1.09004 * 109.47311 * 56.85436 * 1 2 3 32 32 H 1.09001 * 109.47241 * 176.85205 * 1 2 3 33 33 H 1.09000 * 110.66780 * 322.59114 * 4 2 1 34 34 H 1.09000 * 110.66156 * 85.55839 * 4 2 1 35 35 H 1.09001 * 115.55047 * 281.28154 * 6 5 4 36 36 H 1.09006 * 117.49821 * 359.97438 * 7 6 5 37 37 H 1.08998 * 117.49889 * 145.01237 * 7 6 5 38 38 H 1.08994 * 117.50197 * 214.97302 * 8 6 5 39 39 H 1.09000 * 117.50207 * 359.97438 * 8 6 5 40 40 H 1.09005 * 109.91442 * 215.31313 * 9 5 4 41 41 H 1.08996 * 109.91809 * 94.02729 * 9 5 4 42 42 H 0.97009 * 119.99859 * 269.29036 * 12 10 9 43 43 H 0.96997 * 120.00365 * 359.97438 * 17 15 13 44 44 H 1.09002 * 109.47250 * 64.73399 * 18 17 15 45 45 H 1.09004 * 109.47168 * 304.73152 * 18 17 15 46 46 H 0.97001 * 120.00427 * 354.98134 * 23 22 20 47 47 H 1.09005 * 117.49924 * 214.97170 * 28 19 18 48 48 H 1.09004 * 117.50597 * 359.97438 * 28 19 18 49 49 H 1.09002 * 117.49791 * 359.97438 * 29 19 18 50 50 H 1.08995 * 117.49816 * 144.99961 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7940 -1.2105 5 7 3.4360 -1.2051 -0.7583 6 6 3.9293 -2.3449 -1.5427 7 6 5.3787 -2.2926 -2.0301 8 6 4.2302 -2.1060 -3.0236 9 6 3.2920 -1.5661 0.6687 10 6 2.0770 -0.7907 1.2106 11 1 2.3849 -0.1066 2.0014 12 7 1.0620 -1.7209 1.7111 13 6 1.0958 -2.1282 2.9953 14 8 1.9668 -1.7241 3.7373 15 6 0.0606 -3.0777 3.5057 16 8 -0.8101 -3.4822 2.7636 17 7 0.0942 -3.4846 4.7902 18 6 -0.9203 -4.4157 5.2902 19 6 -0.7264 -4.6217 6.7939 20 6 0.5566 -5.3018 7.1967 21 1 1.3977 -4.7130 7.5317 22 6 0.6566 -6.6756 7.1377 23 7 -0.3250 -7.3850 6.6250 24 14 2.1864 -7.5294 7.7858 25 1 2.0468 -8.9972 7.6084 26 1 2.3528 -7.2193 9.2285 27 1 3.3756 -7.0507 7.0363 28 6 -1.2814 -3.5478 7.7317 29 6 -1.9724 -4.9094 7.6339 30 1 -0.3634 0.4642 0.9169 31 1 -0.3634 0.5619 -0.8605 32 1 -0.3634 -1.0261 -0.0564 33 1 1.4623 -1.6675 -1.4127 34 1 2.1454 -0.1563 -2.0922 35 1 3.5275 -3.3183 -1.2614 36 1 5.9660 -1.4122 -1.7690 37 1 5.9306 -3.2317 -2.0693 38 1 4.0267 -2.9223 -3.7166 39 1 4.0617 -1.1032 -3.4161 40 1 4.1898 -1.2798 1.2165 41 1 3.1213 -2.6383 0.7650 42 1 0.3656 -2.0439 1.1180 43 1 0.7904 -3.1615 5.3832 44 1 -0.8204 -5.3720 4.7767 45 1 -1.9130 -4.0055 5.1047 46 1 -1.1488 -6.9495 6.3555 47 1 -0.7185 -3.3332 8.6402 48 1 -1.7845 -2.6940 7.2777 49 1 -2.9303 -4.9515 7.1154 50 1 -1.8641 -5.5906 8.4779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343106298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:48 Heat of formation + Delta-G solvation = -33.975610 kcal Electronic energy + Delta-G solvation = -29316.491146 eV Core-core repulsion = 25344.397213 eV Total energy + Delta-G solvation = -3972.093933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98472 -40.68889 -39.53358 -38.74655 -37.66439 -35.49096 -34.56054 -33.99410 -32.83149 -29.89957 -28.63072 -27.03818 -26.95197 -25.19682 -23.23622 -23.22260 -23.03069 -21.66107 -21.54095 -21.45153 -20.85208 -19.79285 -18.48269 -18.10276 -17.50022 -17.11980 -16.95286 -16.57119 -16.08418 -15.82891 -15.67212 -15.62712 -15.55716 -15.01719 -14.76469 -14.63204 -14.35171 -14.23991 -13.83811 -13.62565 -13.58274 -13.15988 -13.00783 -12.89292 -12.82786 -12.65738 -12.41462 -12.25988 -12.24484 -11.98833 -11.97432 -11.74099 -11.54672 -11.35247 -11.06312 -10.86982 -10.62635 -10.51876 -10.46757 -10.33335 -10.14888 -9.51920 -8.55456 -6.31797 0.26765 1.24452 1.54536 1.59880 1.78890 2.06493 2.50573 2.56892 2.78189 2.84647 3.18798 3.24502 3.37378 3.44880 3.53669 3.82363 3.97197 3.97667 4.07757 4.16145 4.23443 4.30066 4.33488 4.40387 4.44085 4.46395 4.54243 4.59150 4.70747 4.72745 4.77478 4.82010 4.83256 4.84492 5.00891 5.03426 5.03631 5.11573 5.17567 5.20355 5.28189 5.28532 5.29991 5.43769 5.71978 5.88404 6.01415 6.10980 6.22217 6.33762 6.66609 6.68020 6.88558 7.50103 8.84482 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.002688 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.599381 B =10413.302415 C =11673.639396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.114 0.886 4 C 0.041 3.959 5 N -0.488 5.488 6 C -0.027 4.027 7 C -0.162 4.162 8 C -0.154 4.154 9 C 0.032 3.968 10 C 0.132 3.868 11 H 0.100 0.900 12 N -0.681 5.681 13 C 0.516 3.484 14 O -0.536 6.536 15 C 0.495 3.505 16 O -0.556 6.556 17 N -0.667 5.667 18 C 0.169 3.831 19 C -0.024 4.024 20 C -0.581 4.581 21 H 0.048 0.952 22 C -0.016 4.016 23 N -0.928 5.928 24 Si 1.106 2.894 25 H -0.288 1.288 26 H -0.271 1.271 27 H -0.278 1.278 28 C -0.165 4.165 29 C -0.171 4.171 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.417 0.583 43 H 0.415 0.585 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.266 0.734 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 15.737 -18.112 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.132 0.868 4 C -0.086 4.086 5 N -0.211 5.211 6 C -0.136 4.136 7 C -0.200 4.200 8 C -0.191 4.191 9 C -0.097 4.097 10 C 0.027 3.973 11 H 0.118 0.882 12 N -0.336 5.336 13 C 0.297 3.703 14 O -0.413 6.413 15 C 0.275 3.725 16 O -0.435 6.435 17 N -0.317 5.317 18 C 0.046 3.954 19 C -0.025 4.025 20 C -0.619 4.619 21 H 0.066 0.934 22 C -0.217 4.217 23 N -0.564 5.564 24 Si 0.929 3.071 25 H -0.213 1.213 26 H -0.197 1.197 27 H -0.203 1.203 28 C -0.202 4.202 29 C -0.210 4.210 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.257 0.743 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.102 14.667 -18.016 24.019 hybrid contribution -1.405 0.193 0.330 1.456 sum 4.697 14.860 -17.686 23.573 Atomic orbital electron populations 1.21737 0.93127 1.02023 1.03344 1.22388 0.96691 1.00280 0.91547 0.86834 1.23366 0.88076 0.98738 0.98430 1.64633 1.23926 1.31608 1.00976 1.22678 1.00960 0.93021 0.96981 1.23075 0.90539 1.03672 1.02721 1.23063 1.01846 1.03903 0.90272 1.23240 0.98492 0.98024 0.89966 1.22080 0.86924 0.90409 0.97868 0.88228 1.45977 1.31782 1.46064 1.09801 1.19966 0.84897 0.81700 0.83767 1.90755 1.37032 1.56334 1.57147 1.20400 0.86000 0.82907 0.83161 1.90696 1.38073 1.58199 1.56580 1.45734 1.31219 1.44395 1.10363 1.20891 0.89096 0.90588 0.94850 1.19312 0.94628 1.00565 0.88022 1.21499 0.98180 0.93647 1.48537 0.93364 1.26935 1.05070 0.95762 0.93908 1.70843 1.06484 1.40223 1.38835 0.83055 0.72215 0.75081 0.76740 1.21342 1.19668 1.20322 1.22889 1.03809 0.91577 1.01965 1.22729 0.96128 0.99160 1.02951 0.92288 0.89742 0.93030 0.93582 0.87902 0.90483 0.88325 0.88152 0.87600 0.87671 0.89721 0.94431 0.74336 0.74853 0.94450 0.92285 0.92296 0.89712 0.88771 0.89526 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.49 71.98 0.61 -1.20 16 2 C -0.09 -1.22 3.62 -9.59 -0.03 -1.25 16 3 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.04 0.57 5.76 86.65 0.50 1.07 16 5 N -0.49 -8.61 5.42 -857.88 -4.65 -13.26 16 6 C -0.03 -0.47 4.99 44.92 0.22 -0.25 16 7 C -0.16 -2.40 10.46 30.60 0.32 -2.08 16 8 C -0.15 -1.95 10.16 30.59 0.31 -1.64 16 9 C 0.03 0.68 6.50 86.45 0.56 1.24 16 10 C 0.13 2.63 3.22 45.87 0.15 2.78 16 11 H 0.10 2.17 7.56 -2.38 -0.02 2.15 16 12 N -0.68 -16.45 4.38 -439.72 -1.93 -18.38 16 13 C 0.52 16.51 7.89 87.27 0.69 17.19 16 14 O -0.54 -19.19 16.13 -3.24 -0.05 -19.24 16 15 C 0.49 18.48 7.89 87.27 0.69 19.17 16 16 O -0.56 -22.29 16.47 -3.24 -0.05 -22.35 16 17 N -0.67 -26.93 5.47 -464.40 -2.54 -29.47 16 18 C 0.17 7.52 5.37 86.38 0.46 7.98 16 19 C -0.02 -1.13 0.91 -52.93 -0.05 -1.18 16 20 C -0.58 -30.59 8.58 25.60 0.22 -30.37 16 21 H 0.05 2.55 7.82 -2.91 -0.02 2.52 16 22 C -0.02 -0.87 5.41 84.65 0.46 -0.41 16 23 N -0.93 -54.04 13.60 21.45 0.29 -53.75 16 24 Si 1.11 49.30 29.91 68.60 2.05 51.35 16 25 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 C -0.17 -6.52 9.95 30.59 0.30 -6.21 16 29 C -0.17 -7.40 8.90 30.59 0.27 -7.13 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.72 6.26 -2.39 -0.01 0.71 16 33 H 0.05 0.69 7.91 -2.39 -0.02 0.67 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.51 7.81 -2.39 -0.02 1.49 16 36 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.04 0.93 7.34 -2.39 -0.02 0.92 16 42 H 0.42 9.36 5.93 -92.70 -0.55 8.81 16 43 H 0.41 16.77 7.81 -92.71 -0.72 16.05 16 44 H 0.04 1.90 7.71 -2.39 -0.02 1.89 16 45 H 0.06 2.45 8.09 -2.38 -0.02 2.43 16 46 H 0.27 15.45 6.12 -92.71 -0.57 14.88 16 47 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 48 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 50 H 0.07 3.19 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -63.59 407.01 -1.31 -64.91 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.12 Total: 42.48 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.69 Total: -2.29 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -8.83 Total: -114.86 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.11 Total: -41.59 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.35 kcal Total: -63.59 -1.31 -64.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343106298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.930 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds