Wall clock time and date at job start Tue Mar 31 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47582 * 2 1 4 4 C 1.50701 * 109.47423 * 120.00159 * 2 1 3 5 5 O 1.33494 * 126.82487 * 300.10376 * 4 2 1 6 6 N 1.20663 * 113.15492 * 180.29618 * 5 4 2 7 7 C 1.30012 * 112.29753 * 359.76048 * 6 5 4 8 8 C 1.37359 * 126.83172 * 119.99292 * 4 2 1 9 9 C 1.47394 * 128.56307 * 0.02562 * 8 4 2 10 10 O 1.21607 * 120.00238 * 323.69193 * 9 8 4 11 11 N 1.34784 * 119.99987 * 143.69543 * 9 8 4 12 12 C 1.46925 * 120.62861 * 354.28332 * 11 9 8 13 13 C 1.53186 * 108.77559 * 233.63013 * 12 11 9 14 14 C 1.53042 * 109.31177 * 305.36463 * 13 12 11 15 15 C 1.53038 * 109.53795 * 61.36621 * 14 13 12 16 16 H 1.09003 * 109.50132 * 58.61466 * 15 14 13 17 17 C 1.53003 * 109.49952 * 178.68234 * 15 14 13 18 18 H 1.09000 * 109.47409 * 305.00010 * 17 15 14 19 19 C 1.52999 * 109.47044 * 65.00131 * 17 15 14 20 20 N 1.46505 * 109.47030 * 185.00010 * 17 15 14 21 21 C 1.36938 * 119.99886 * 155.00528 * 20 17 15 22 22 H 1.08004 * 119.99661 * 359.97438 * 21 20 17 23 23 C 1.38814 * 119.99955 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99699 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 119.99798 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46997 * 90.00545 * 25 23 21 27 27 H 1.48505 * 109.47230 * 210.00332 * 25 23 21 28 28 H 1.48499 * 109.47779 * 330.00543 * 25 23 21 29 29 C 1.46919 * 120.63044 * 174.30141 * 11 9 8 30 30 H 1.09006 * 109.46649 * 300.00289 * 1 2 3 31 31 H 1.09001 * 109.47291 * 59.99914 * 1 2 3 32 32 H 1.08997 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47311 * 240.00069 * 2 1 3 34 34 H 1.09008 * 109.46700 * 299.99991 * 3 2 1 35 35 H 1.09000 * 109.47357 * 59.99435 * 3 2 1 36 36 H 1.09000 * 109.47408 * 180.02562 * 3 2 1 37 37 H 1.08004 * 127.33237 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.58786 * 113.84144 * 12 11 9 39 39 H 1.09002 * 109.70564 * 353.48551 * 12 11 9 40 40 H 1.09000 * 109.49948 * 185.41715 * 13 12 11 41 41 H 1.09004 * 109.50120 * 65.31773 * 13 12 11 42 42 H 1.08998 * 109.46537 * 301.34540 * 14 13 12 43 43 H 1.09006 * 109.44904 * 181.37806 * 14 13 12 44 44 H 1.09000 * 109.47116 * 59.99700 * 19 17 15 45 45 H 1.08993 * 109.47285 * 180.02562 * 19 17 15 46 46 H 1.09007 * 109.47130 * 299.99889 * 19 17 15 47 47 H 0.96998 * 119.99812 * 334.99681 * 20 17 15 48 48 H 0.96999 * 120.00075 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.58820 * 6.58979 * 29 11 9 50 50 H 1.08993 * 109.59213 * 246.16018 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7938 -0.3764 2.5007 6 7 2.3242 -1.1156 3.2933 7 6 2.9969 -2.0632 2.7104 8 6 2.8250 -1.8316 1.2679 9 6 3.3738 -2.6070 0.1409 10 8 2.7165 -2.7570 -0.8712 11 7 4.6040 -3.1500 0.2322 12 6 5.4594 -2.8748 1.3946 13 6 6.8120 -2.3538 0.8992 14 6 7.4060 -3.3538 -0.0956 15 6 6.4719 -3.4941 -1.2997 16 1 6.3367 -2.5204 -1.7707 17 6 7.0823 -4.4690 -2.3087 18 1 8.0859 -4.1365 -2.5739 19 6 7.1550 -5.8657 -1.6884 20 7 6.2481 -4.5120 -3.5123 21 6 6.7974 -4.8736 -4.7134 22 1 7.8456 -5.1267 -4.7735 23 6 6.0071 -4.9138 -5.8540 24 7 6.5352 -5.2609 -7.0085 25 14 4.1943 -4.4753 -5.7500 26 1 4.0232 -3.0188 -5.9841 27 1 3.4416 -5.2342 -6.7810 28 1 3.6770 -4.8242 -4.4025 29 6 5.1153 -4.0280 -0.8291 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 3.5619 -2.8523 3.1843 38 1 5.6076 -3.7920 1.9646 39 1 4.9881 -2.1232 2.0280 40 1 7.4890 -2.2369 1.7454 41 1 6.6733 -1.3908 0.4079 42 1 7.5216 -4.3232 0.3891 43 1 8.3799 -2.9972 -0.4310 44 1 6.1514 -6.1982 -1.4232 45 1 7.5902 -6.5602 -2.4070 46 1 7.7757 -5.8338 -0.7929 47 1 5.3068 -4.2844 -3.4583 48 1 5.9829 -5.2893 -7.8054 49 1 4.4159 -4.0362 -1.6652 50 1 5.2355 -5.0392 -0.4406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482479502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:24 Heat of formation + Delta-G solvation = 30.816029 kcal Electronic energy + Delta-G solvation = -30507.797321 eV Core-core repulsion = 26538.512965 eV Total energy + Delta-G solvation = -3969.284356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.21553 -40.31724 -38.08652 -36.29226 -35.68403 -34.08035 -32.91727 -32.00382 -31.17396 -30.22607 -28.25335 -27.53072 -26.32836 -24.73261 -24.22740 -23.51468 -23.00484 -21.38847 -20.98836 -19.52786 -18.81910 -18.09227 -17.88735 -17.38172 -16.74710 -16.18572 -15.56193 -15.07589 -14.78297 -14.76228 -14.73493 -14.19286 -14.01652 -13.94891 -13.61104 -13.50854 -13.18152 -13.04936 -12.71448 -12.61092 -12.55554 -12.20059 -12.04997 -11.79699 -11.68520 -11.64016 -11.45354 -11.20876 -11.17263 -10.92583 -10.73928 -10.58691 -10.54065 -10.41816 -10.20943 -10.06620 -9.89117 -9.69070 -9.53017 -8.91323 -8.63823 -7.24909 -5.74174 -3.09612 0.88481 1.50519 2.47333 2.68765 3.00244 3.43880 3.49706 3.52351 3.87867 3.96806 4.31065 4.45697 4.58898 4.63806 4.66457 4.68470 4.78519 4.87036 4.93505 5.06218 5.16950 5.22710 5.28117 5.29353 5.41232 5.45003 5.47802 5.51119 5.52847 5.57810 5.68532 5.70081 5.72733 5.76923 5.87050 5.91181 5.96001 5.96824 6.13121 6.21216 6.22947 6.39832 6.45598 6.58414 6.77441 7.02261 7.25348 7.85496 8.01115 8.01947 8.44884 9.23646 9.96698 10.15786 11.44077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.003738 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.671718 B = 7488.150544 C = 9091.079674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C -0.149 4.149 4 C 0.051 3.949 5 O 0.095 5.905 6 N -0.355 5.355 7 C 0.020 3.980 8 C -0.254 4.254 9 C 0.594 3.406 10 O -0.525 6.525 11 N -0.600 5.600 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.114 4.114 15 C -0.108 4.108 16 H 0.076 0.924 17 C 0.186 3.814 18 H 0.059 0.941 19 C -0.170 4.170 20 N -0.750 5.750 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.879 3.121 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.274 1.274 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.201 0.799 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.095 0.905 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 10.597 22.822 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 C -0.207 4.207 4 C -0.013 4.013 5 O 0.034 5.966 6 N -0.060 5.060 7 C -0.162 4.162 8 C -0.261 4.261 9 C 0.381 3.619 10 O -0.402 6.402 11 N -0.332 5.332 12 C -0.023 4.023 13 C -0.172 4.172 14 C -0.152 4.152 15 C -0.128 4.128 16 H 0.094 0.906 17 C 0.076 3.924 18 H 0.077 0.923 19 C -0.230 4.230 20 N -0.393 5.393 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.710 3.290 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.200 1.200 29 C -0.007 4.007 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.218 0.782 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.113 0.887 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.384 10.790 23.349 26.502 hybrid contribution -0.884 -0.334 -0.578 1.107 sum -7.267 10.456 22.771 26.089 Atomic orbital electron populations 1.21847 0.92476 1.03062 1.02997 1.20102 0.97363 0.96224 0.90614 1.21900 1.01698 0.93865 1.03217 1.24826 0.94528 0.94551 0.87425 1.84540 1.55425 1.44087 1.12529 1.73671 1.11379 1.04764 1.16167 1.26408 1.00398 0.99464 0.89938 1.22100 1.08214 1.01384 0.94447 1.16892 0.81291 0.78570 0.85159 1.90848 1.59245 1.59660 1.30445 1.47970 1.14389 1.48453 1.22426 1.21983 0.91467 1.01040 0.87823 1.21918 0.95694 0.99796 0.99775 1.21603 0.98856 0.99252 0.95452 1.21842 0.94100 1.00839 0.96008 0.90579 1.20149 0.94781 0.91895 0.85596 0.92308 1.22551 1.00552 1.00268 0.99655 1.42866 1.08188 1.83338 1.04907 1.19058 0.96055 1.38177 0.83942 0.89204 1.24640 0.97451 1.01496 0.95366 1.69699 1.35246 1.54528 0.98780 0.86627 0.86841 0.78317 0.77249 1.21077 1.21771 1.20048 1.21936 0.96107 0.92321 0.90321 0.91874 0.90845 0.91804 0.86429 0.90781 0.91724 0.92075 0.78189 0.91040 0.89798 0.90703 0.91518 0.91273 0.91243 0.93374 0.92330 0.93955 0.80518 0.93106 0.88670 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.02 -0.23 3.28 -91.77 -0.30 -0.53 16 3 C -0.15 -1.14 9.18 37.16 0.34 -0.80 16 4 C 0.05 0.55 6.06 -34.63 -0.21 0.34 16 5 O 0.09 1.02 11.06 18.65 0.21 1.23 16 6 N -0.35 -3.91 12.01 31.80 0.38 -3.52 16 7 C 0.02 0.20 10.05 -14.73 -0.15 0.05 16 8 C -0.25 -3.00 5.56 -102.90 -0.57 -3.58 16 9 C 0.59 8.56 7.49 -12.53 -0.09 8.47 16 10 O -0.53 -9.55 15.23 5.27 0.08 -9.47 16 11 N -0.60 -7.65 2.97 -174.05 -0.52 -8.17 16 12 C 0.10 0.90 5.58 -3.71 -0.02 0.88 16 13 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 14 C -0.11 -1.24 4.89 -26.69 -0.13 -1.37 16 15 C -0.11 -1.59 2.27 -90.50 -0.21 -1.79 16 16 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.19 3.37 2.67 -67.93 -0.18 3.19 16 18 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 19 C -0.17 -2.78 8.77 37.16 0.33 -2.46 16 20 N -0.75 -17.53 4.86 -53.42 -0.26 -17.79 16 21 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 22 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 25 Si 0.88 22.90 27.73 -169.99 -4.71 18.18 16 26 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 28 H -0.27 -6.89 6.52 56.52 0.37 -6.53 16 29 C 0.11 1.70 5.19 -3.71 -0.02 1.69 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.39 6.70 -51.93 -0.35 1.05 16 34 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.20 1.34 7.35 -52.48 -0.39 0.95 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.67 4.58 -51.93 -0.24 0.43 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.70 6.63 -51.93 -0.34 0.35 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.77 6.23 -51.93 -0.32 0.45 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 0.55 6.60 -51.92 -0.34 0.21 16 47 H 0.36 8.57 4.34 -40.82 -0.18 8.39 16 48 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 49 H 0.10 1.76 5.82 -51.92 -0.30 1.45 16 50 H 0.08 1.08 6.06 -51.93 -0.31 0.76 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -33.75 387.18 -7.36 -41.11 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.86 Total: 6.39 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.29 Total: -5.01 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.38 Total: -58.27 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.29 Total: -8.24 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.71 Total: 18.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.75 -7.36 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482479502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.928 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds