Wall clock time and date at job start Tue Mar 31 2020 19:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47582 * 2 1 4 4 C 1.50701 * 109.47423 * 120.00159 * 2 1 3 5 5 O 1.33494 * 126.82487 * 300.10376 * 4 2 1 6 6 N 1.20663 * 113.15492 * 180.29618 * 5 4 2 7 7 C 1.30012 * 112.29753 * 359.76048 * 6 5 4 8 8 C 1.37359 * 126.83172 * 119.99292 * 4 2 1 9 9 C 1.47394 * 128.56307 * 0.02562 * 8 4 2 10 10 O 1.21607 * 120.00238 * 323.69193 * 9 8 4 11 11 N 1.34784 * 119.99987 * 143.69543 * 9 8 4 12 12 C 1.46925 * 120.62861 * 354.28332 * 11 9 8 13 13 C 1.53186 * 108.77559 * 233.63013 * 12 11 9 14 14 C 1.53042 * 109.31177 * 305.36463 * 13 12 11 15 15 C 1.53038 * 109.53795 * 61.36621 * 14 13 12 16 16 H 1.09003 * 109.50132 * 58.61466 * 15 14 13 17 17 C 1.53003 * 109.49952 * 178.68234 * 15 14 13 18 18 H 1.09000 * 109.47409 * 305.00010 * 17 15 14 19 19 C 1.52999 * 109.47044 * 65.00131 * 17 15 14 20 20 N 1.46505 * 109.47030 * 185.00010 * 17 15 14 21 21 C 1.36938 * 119.99886 * 155.00528 * 20 17 15 22 22 H 1.08004 * 119.99661 * 359.97438 * 21 20 17 23 23 C 1.38814 * 119.99955 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99699 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 119.99798 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46997 * 90.00545 * 25 23 21 27 27 H 1.48505 * 109.47230 * 210.00332 * 25 23 21 28 28 H 1.48499 * 109.47779 * 330.00543 * 25 23 21 29 29 C 1.46919 * 120.63044 * 174.30141 * 11 9 8 30 30 H 1.09006 * 109.46649 * 300.00289 * 1 2 3 31 31 H 1.09001 * 109.47291 * 59.99914 * 1 2 3 32 32 H 1.08997 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47311 * 240.00069 * 2 1 3 34 34 H 1.09008 * 109.46700 * 299.99991 * 3 2 1 35 35 H 1.09000 * 109.47357 * 59.99435 * 3 2 1 36 36 H 1.09000 * 109.47408 * 180.02562 * 3 2 1 37 37 H 1.08004 * 127.33237 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.58786 * 113.84144 * 12 11 9 39 39 H 1.09002 * 109.70564 * 353.48551 * 12 11 9 40 40 H 1.09000 * 109.49948 * 185.41715 * 13 12 11 41 41 H 1.09004 * 109.50120 * 65.31773 * 13 12 11 42 42 H 1.08998 * 109.46537 * 301.34540 * 14 13 12 43 43 H 1.09006 * 109.44904 * 181.37806 * 14 13 12 44 44 H 1.09000 * 109.47116 * 59.99700 * 19 17 15 45 45 H 1.08993 * 109.47285 * 180.02562 * 19 17 15 46 46 H 1.09007 * 109.47130 * 299.99889 * 19 17 15 47 47 H 0.96998 * 119.99812 * 334.99681 * 20 17 15 48 48 H 0.96999 * 120.00075 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.58820 * 6.58979 * 29 11 9 50 50 H 1.08993 * 109.59213 * 246.16018 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7938 -0.3764 2.5007 6 7 2.3242 -1.1156 3.2933 7 6 2.9969 -2.0632 2.7104 8 6 2.8250 -1.8316 1.2679 9 6 3.3738 -2.6070 0.1409 10 8 2.7165 -2.7570 -0.8712 11 7 4.6040 -3.1500 0.2322 12 6 5.4594 -2.8748 1.3946 13 6 6.8120 -2.3538 0.8992 14 6 7.4060 -3.3538 -0.0956 15 6 6.4719 -3.4941 -1.2997 16 1 6.3367 -2.5204 -1.7707 17 6 7.0823 -4.4690 -2.3087 18 1 8.0859 -4.1365 -2.5739 19 6 7.1550 -5.8657 -1.6884 20 7 6.2481 -4.5120 -3.5123 21 6 6.7974 -4.8736 -4.7134 22 1 7.8456 -5.1267 -4.7735 23 6 6.0071 -4.9138 -5.8540 24 7 6.5352 -5.2609 -7.0085 25 14 4.1943 -4.4753 -5.7500 26 1 4.0232 -3.0188 -5.9841 27 1 3.4416 -5.2342 -6.7810 28 1 3.6770 -4.8242 -4.4025 29 6 5.1153 -4.0280 -0.8291 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 3.5619 -2.8523 3.1843 38 1 5.6076 -3.7920 1.9646 39 1 4.9881 -2.1232 2.0280 40 1 7.4890 -2.2369 1.7454 41 1 6.6733 -1.3908 0.4079 42 1 7.5216 -4.3232 0.3891 43 1 8.3799 -2.9972 -0.4310 44 1 6.1514 -6.1982 -1.4232 45 1 7.5902 -6.5602 -2.4070 46 1 7.7757 -5.8338 -0.7929 47 1 5.3068 -4.2844 -3.4583 48 1 5.9829 -5.2893 -7.8054 49 1 4.4159 -4.0362 -1.6652 50 1 5.2355 -5.0392 -0.4406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482479502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:23 Heat of formation + Delta-G solvation = 9.466669 kcal Electronic energy + Delta-G solvation = -30508.723099 eV Core-core repulsion = 26538.512965 eV Total energy + Delta-G solvation = -3970.210134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.02586 -41.38558 -39.29665 -37.21765 -36.92013 -35.14433 -34.39644 -33.33938 -32.09574 -31.76693 -29.65304 -28.16391 -27.31070 -26.21606 -25.08157 -24.72053 -24.20266 -22.39025 -22.02695 -20.78702 -19.92843 -19.61503 -18.88199 -18.57724 -17.57247 -17.31295 -16.68762 -16.46397 -16.09760 -16.02027 -15.59542 -15.57316 -14.98503 -14.94241 -14.73386 -14.45422 -14.37739 -14.26127 -14.11176 -13.99526 -13.58441 -13.13744 -13.12103 -12.97676 -12.86673 -12.69595 -12.47871 -12.38619 -12.32562 -12.09748 -11.94250 -11.91546 -11.85605 -11.78518 -11.47413 -11.44441 -11.30577 -11.06103 -10.98812 -10.56931 -9.68525 -9.32006 -8.04622 -5.35246 0.00275 0.70870 1.33082 1.35677 1.41311 1.56360 1.70363 2.04163 2.43927 3.11129 3.18548 3.27808 3.43455 3.52514 3.70310 3.78859 3.86337 3.90640 3.99566 4.05027 4.08771 4.18081 4.25246 4.35638 4.47965 4.53720 4.60202 4.66655 4.70235 4.72062 4.77684 4.81436 4.81725 4.83507 4.88188 5.03433 5.05243 5.08456 5.13092 5.22633 5.23085 5.24476 5.33929 5.41031 5.48238 5.66788 5.78028 6.21143 6.25204 6.94525 7.05100 7.07187 7.85757 8.01563 9.17296 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.003738 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.671718 B = 7488.150544 C = 9091.079674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C -0.145 4.145 4 C 0.057 3.943 5 O 0.091 5.909 6 N -0.368 5.368 7 C 0.041 3.959 8 C -0.275 4.275 9 C 0.590 3.410 10 O -0.576 6.576 11 N -0.595 5.595 12 C 0.094 3.906 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.096 4.096 16 H 0.051 0.949 17 C 0.176 3.824 18 H 0.050 0.950 19 C -0.160 4.160 20 N -0.756 5.756 21 C -0.220 4.220 22 H 0.064 0.936 23 C -0.057 4.057 24 N -0.982 5.982 25 Si 0.940 3.060 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.264 1.264 29 C 0.119 3.881 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.235 0.765 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.030 0.970 46 H 0.084 0.916 47 H 0.360 0.640 48 H 0.257 0.743 49 H 0.054 0.946 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 11.330 26.829 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.202 4.202 4 C -0.007 4.007 5 O 0.034 5.966 6 N -0.075 5.075 7 C -0.142 4.142 8 C -0.282 4.282 9 C 0.378 3.622 10 O -0.456 6.456 11 N -0.326 5.326 12 C -0.028 4.028 13 C -0.166 4.166 14 C -0.146 4.146 15 C -0.116 4.116 16 H 0.070 0.930 17 C 0.068 3.932 18 H 0.068 0.932 19 C -0.219 4.219 20 N -0.400 5.400 21 C -0.351 4.351 22 H 0.082 0.918 23 C -0.249 4.249 24 N -0.633 5.633 25 Si 0.769 3.231 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.190 1.190 29 C -0.003 4.003 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.103 0.897 47 H 0.193 0.807 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.378 11.550 27.445 30.452 hybrid contribution -0.767 -0.554 -1.761 1.999 sum -7.145 10.996 25.684 28.838 Atomic orbital electron populations 1.21842 0.91321 1.02502 1.04371 1.20127 0.98315 0.97032 0.89155 1.21887 1.01259 0.92560 1.04466 1.25056 0.93561 0.94272 0.87835 1.84545 1.55611 1.44232 1.12197 1.73668 1.12141 1.05383 1.16335 1.26842 0.99405 0.99352 0.88561 1.21942 1.09539 1.01952 0.94813 1.17244 0.81459 0.78322 0.85140 1.90819 1.60703 1.61582 1.32528 1.48028 1.14318 1.47434 1.22843 1.22344 0.90734 1.03039 0.86636 1.21910 0.96162 0.98298 1.00224 1.21600 0.97900 1.01097 0.94024 1.21666 0.94993 0.98247 0.96692 0.93005 1.20457 0.93741 0.94219 0.84748 0.93231 1.22397 1.01449 0.97634 1.00453 1.42987 1.08668 1.83094 1.05226 1.19078 0.94885 1.35533 0.85621 0.91783 1.25290 1.01378 1.02968 0.95255 1.69842 1.36707 1.57203 0.99536 0.85638 0.82250 0.77763 0.77441 1.21089 1.21953 1.18961 1.21719 0.94977 0.93595 0.90024 0.90407 0.89569 0.93301 0.89124 0.89645 0.90360 0.92722 0.74890 0.87938 0.88414 0.87171 0.92913 0.89290 0.90820 0.93001 0.95057 0.89697 0.80680 0.93421 0.92789 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.18 71.98 0.66 -1.59 16 2 C -0.03 -0.51 3.28 -11.54 -0.04 -0.55 16 3 C -0.14 -2.05 9.18 71.98 0.66 -1.39 16 4 C 0.06 1.19 6.06 25.48 0.15 1.34 16 5 O 0.09 1.81 11.06 76.97 0.85 2.66 16 6 N -0.37 -7.15 12.01 -54.20 -0.65 -7.80 16 7 C 0.04 0.67 10.05 87.29 0.88 1.55 16 8 C -0.28 -6.12 5.56 -18.75 -0.10 -6.22 16 9 C 0.59 16.74 7.49 86.65 0.65 17.39 16 10 O -0.58 -21.67 15.23 -4.05 -0.06 -21.74 16 11 N -0.60 -14.11 2.97 -822.82 -2.45 -16.55 16 12 C 0.09 1.29 5.58 86.36 0.48 1.78 16 13 C -0.13 -1.77 6.08 30.67 0.19 -1.58 16 14 C -0.11 -1.98 4.89 30.62 0.15 -1.83 16 15 C -0.10 -2.71 2.27 -10.71 -0.02 -2.73 16 16 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 17 C 0.18 6.30 2.67 44.99 0.12 6.42 16 18 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 19 C -0.16 -4.94 8.77 71.98 0.63 -4.31 16 20 N -0.76 -35.92 4.86 -322.92 -1.57 -37.49 16 21 C -0.22 -12.69 10.41 84.03 0.87 -11.82 16 22 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 23 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 24 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 25 Si 0.94 48.86 27.73 68.60 1.90 50.76 16 26 H -0.28 -14.64 7.11 99.48 0.71 -13.94 16 27 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 28 H -0.26 -13.11 6.52 99.48 0.65 -12.47 16 29 C 0.12 3.42 5.19 86.37 0.45 3.87 16 30 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 2.26 6.70 -2.38 -0.02 2.25 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.23 1.98 7.35 -2.91 -0.02 1.96 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 1.13 4.58 -2.39 -0.01 1.12 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.32 6.63 -2.39 -0.02 1.30 16 43 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.05 1.56 6.23 -2.39 -0.01 1.55 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 1.90 6.60 -2.38 -0.02 1.89 16 47 H 0.36 17.35 4.34 -92.71 -0.40 16.95 16 48 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 49 H 0.05 2.03 5.82 -2.38 -0.01 2.01 16 50 H 0.09 2.36 6.06 -2.39 -0.01 2.35 16 Total: -1.00 -77.79 387.18 5.01 -72.78 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.49 Total: 23.91 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 6.19 Total: -2.68 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -4.36 Total: -125.69 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.79 Total: -19.08 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.90 Total: 50.76 kcal Total: -77.79 5.01 -72.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482479502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.243 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds