Wall clock time and date at job start Tue Mar 31 2020 19:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46938 * 2 1 4 4 C 1.53000 * 109.47375 * 240.00038 * 2 1 3 5 5 C 1.52991 * 109.46974 * 174.99893 * 4 2 1 6 6 C 1.53003 * 109.47025 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.47316 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99984 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00351 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00185 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99893 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.46882 * 89.99669 * 12 10 8 14 14 H 1.48494 * 109.46906 * 209.99557 * 12 10 8 15 15 H 1.48501 * 109.46910 * 329.99553 * 12 10 8 16 16 N 1.46497 * 109.46991 * 119.99625 * 2 1 3 17 17 C 1.34781 * 120.00189 * 274.99956 * 16 2 1 18 18 O 1.21610 * 119.99926 * 0.02562 * 17 16 2 19 19 C 1.47402 * 119.99982 * 180.02562 * 17 16 2 20 20 C 1.37356 * 128.56219 * 0.16472 * 19 17 16 21 21 O 1.33500 * 106.33606 * 180.23665 * 20 19 17 22 22 N 1.20658 * 113.15990 * 359.74016 * 21 20 19 23 23 C 1.30011 * 112.29690 * 0.02562 * 22 21 20 24 24 C 1.50701 * 127.33219 * 179.97438 * 23 22 21 25 25 C 1.53876 * 110.03013 * 60.03089 * 24 23 22 26 26 C 1.54267 * 106.59870 * 240.71414 * 25 24 23 27 27 C 1.54891 * 104.19324 * 336.39035 * 26 25 24 28 28 C 1.54261 * 110.03593 * 302.86175 * 24 23 22 29 29 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47741 * 299.99857 * 1 2 3 31 31 H 1.09005 * 109.47028 * 60.00142 * 1 2 3 32 32 H 1.08999 * 109.46589 * 295.00155 * 4 2 1 33 33 H 1.09001 * 109.46750 * 54.99787 * 4 2 1 34 34 H 1.08999 * 109.47676 * 299.99596 * 5 4 2 35 35 H 1.09001 * 109.47469 * 60.00334 * 5 4 2 36 36 H 1.08993 * 109.47395 * 300.00028 * 6 5 4 37 37 H 1.09006 * 109.46845 * 60.00233 * 6 5 4 38 38 H 0.97002 * 120.00173 * 0.02562 * 7 6 5 39 39 H 0.96998 * 120.00229 * 180.02562 * 11 10 8 40 40 H 0.97002 * 120.00330 * 95.00722 * 16 2 1 41 41 H 1.07997 * 126.83657 * 359.97438 * 20 19 17 42 42 H 1.08998 * 110.05533 * 181.43992 * 24 23 22 43 43 H 1.08995 * 110.03160 * 359.97438 * 25 24 23 44 44 H 1.08998 * 110.03319 * 121.42692 * 25 24 23 45 45 H 1.09004 * 110.48597 * 95.06674 * 26 25 24 46 46 H 1.08994 * 110.48679 * 217.71200 * 26 25 24 47 47 H 1.09005 * 110.75269 * 279.62515 * 27 26 25 48 48 H 1.09004 * 110.91555 * 156.33330 * 27 26 25 49 49 H 1.09000 * 110.48928 * 261.57113 * 28 24 23 50 50 H 1.08999 * 110.48469 * 24.21522 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0749 -1.3350 -2.5625 7 7 5.5349 -1.2310 -2.6245 8 6 6.2187 -1.8052 -3.6628 9 1 5.6817 -2.3342 -4.4361 10 6 7.6021 -1.7062 -3.7218 11 7 8.2593 -2.2576 -4.7200 12 14 8.5309 -0.7905 -2.3845 13 1 8.8931 -1.7353 -1.2977 14 1 9.7661 -0.1976 -2.9570 15 1 7.6717 0.2893 -1.8358 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3572 18 8 1.8573 1.1617 2.4118 19 6 2.6388 -0.7128 3.5606 20 6 3.0159 -2.0265 3.6969 21 8 3.3803 -2.1823 4.9717 22 7 3.2860 -1.1687 5.6194 23 6 2.8496 -0.1696 4.9113 24 6 2.6060 1.2430 5.3765 25 6 3.9146 1.8572 5.9040 26 6 3.6688 2.2130 7.3849 27 6 2.1312 2.3686 7.4880 28 6 1.6108 1.2470 6.5551 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3573 35 1 3.9994 -1.0727 -0.4259 36 1 3.7866 -2.3852 -2.5184 37 1 3.6403 -0.8758 -3.4505 38 1 6.0173 -0.7555 -1.9301 39 1 9.2260 -2.1888 -4.7610 40 1 2.2491 -1.6317 1.1527 41 1 3.0136 -2.7840 2.9271 42 1 2.2154 1.8447 4.5559 43 1 4.7256 1.1334 5.8239 44 1 4.1590 2.7569 5.3394 45 1 4.0151 1.4080 8.0332 46 1 4.1650 3.1494 7.6396 47 1 1.8171 3.3480 7.1270 48 1 1.7916 2.2086 8.5113 49 1 0.6050 1.4786 6.2044 50 1 1.6246 0.2861 7.0694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485723406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:22 Heat of formation + Delta-G solvation = 8.201770 kcal Electronic energy + Delta-G solvation = -28830.405272 eV Core-core repulsion = 24860.140288 eV Total energy + Delta-G solvation = -3970.264984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.21887 -40.00920 -38.55849 -36.93599 -35.08438 -34.04648 -33.01762 -32.18166 -31.06924 -29.81208 -29.02311 -29.00427 -26.03859 -25.12332 -22.86972 -22.74446 -21.38301 -21.02634 -20.97693 -20.78987 -19.86734 -18.52114 -17.94079 -17.53833 -16.99674 -16.52323 -16.03919 -15.51497 -15.11613 -14.89379 -14.71195 -14.37564 -14.05070 -13.85931 -13.69736 -13.67244 -13.62409 -13.05219 -12.70304 -12.39263 -12.27422 -12.20404 -12.04524 -11.76709 -11.50847 -11.42352 -11.37431 -11.35412 -11.04206 -11.00157 -10.94926 -10.89619 -10.59031 -10.46229 -10.20511 -10.14728 -10.13344 -10.05357 -9.61404 -9.32543 -8.91510 -7.25330 -5.78923 -3.14478 0.73946 1.50165 2.56397 2.94104 2.96227 3.35840 3.39089 3.43953 3.66214 3.89785 4.32093 4.32479 4.49025 4.52897 4.57347 4.62569 4.71933 4.88363 4.98784 5.01046 5.11919 5.19749 5.21456 5.27962 5.33803 5.35193 5.36129 5.46857 5.50068 5.50842 5.58785 5.61359 5.66067 5.78152 5.80905 5.86773 5.87451 5.92380 6.01723 6.02233 6.05110 6.09499 6.22728 6.28524 6.70057 6.73478 7.18924 7.88514 7.92929 7.97363 8.40322 9.19473 9.92064 10.11780 11.39496 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.002582 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.112854 B =10842.029511 C =12065.698366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.934 5.934 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.714 5.714 17 C 0.597 3.403 18 O -0.529 6.529 19 C -0.254 4.254 20 C -0.005 4.005 21 O 0.098 5.902 22 N -0.354 5.354 23 C 0.081 3.919 24 C -0.023 4.023 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.360 0.640 39 H 0.260 0.740 40 H 0.399 0.601 41 H 0.226 0.774 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 4.627 22.900 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.582 5.582 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.366 5.366 17 C 0.384 3.616 18 O -0.406 6.406 19 C -0.261 4.261 20 C -0.087 4.087 21 O 0.039 5.961 22 N -0.060 5.060 23 C -0.082 4.082 24 C -0.042 4.042 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.161 4.161 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.234 0.766 41 H 0.242 0.758 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.717 5.173 23.958 30.243 hybrid contribution 0.761 0.186 -0.121 0.792 sum -16.956 5.359 23.838 29.740 Atomic orbital electron populations 1.22177 0.95111 1.02176 1.02627 1.21106 0.93842 0.97835 0.83355 0.89046 1.21852 0.96572 1.01029 0.96693 1.21793 0.94095 1.01469 0.99464 1.20626 0.84903 0.97057 0.94443 1.42735 1.01740 1.66959 1.28912 1.19067 0.89894 1.27363 1.01176 0.89240 1.24687 0.96213 1.00514 0.97823 1.69699 1.07334 1.49330 1.31855 0.86541 0.79775 0.79988 0.82188 1.21085 1.21663 1.20366 1.45941 1.67226 1.13981 1.09427 1.16814 0.77302 0.86005 0.81524 1.90771 1.50225 1.15052 1.84571 1.22384 1.12829 0.94482 0.96452 1.26461 0.96152 0.97800 0.88310 1.84606 1.63025 1.30251 1.18240 1.73637 1.19439 0.93696 1.19238 1.24774 0.97749 0.97283 0.88360 1.20498 0.96877 0.87290 0.99543 1.22195 0.96164 1.00773 0.96178 1.22356 0.96143 1.01411 0.96135 1.22489 0.95492 0.98687 0.99405 1.22441 0.98193 0.99632 0.95005 0.92407 0.92238 0.91294 0.91133 0.89851 0.91918 0.92200 0.95676 0.95638 0.80732 0.93041 0.76639 0.75761 0.86754 0.91668 0.90898 0.91489 0.91427 0.91161 0.91350 0.91146 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 2 C 0.14 1.37 2.57 -67.93 -0.17 1.19 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C -0.12 -1.21 4.75 -26.74 -0.13 -1.34 16 5 C -0.13 -1.78 5.22 -26.73 -0.14 -1.92 16 6 C 0.16 2.87 6.26 -4.04 -0.03 2.84 16 7 N -0.76 -17.94 5.41 -59.91 -0.32 -18.26 16 8 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 9 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 10 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 12 Si 0.88 22.25 27.74 -169.99 -4.71 17.53 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 16 N -0.71 -6.48 4.53 -54.89 -0.25 -6.73 16 17 C 0.60 6.81 7.78 -12.53 -0.10 6.71 16 18 O -0.53 -7.62 14.94 5.27 0.08 -7.54 16 19 C -0.25 -2.62 6.47 -102.89 -0.67 -3.28 16 20 C 0.00 -0.04 11.85 30.41 0.36 0.33 16 21 O 0.10 0.95 11.06 18.63 0.21 1.16 16 22 N -0.35 -4.02 11.82 34.78 0.41 -3.61 16 23 C 0.08 0.91 5.79 -79.77 -0.46 0.45 16 24 C -0.02 -0.24 3.37 -90.65 -0.31 -0.54 16 25 C -0.11 -1.10 6.45 -25.61 -0.17 -1.27 16 26 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 27 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 28 C -0.11 -1.01 6.35 -25.08 -0.16 -1.17 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.40 2.63 7.79 -40.82 -0.32 2.31 16 41 H 0.23 0.66 7.68 -52.49 -0.40 0.26 16 42 H 0.11 1.33 6.34 -51.93 -0.33 1.01 16 43 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -34.85 404.63 -8.30 -43.15 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.38 Total: 5.22 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.20 Total: -8.36 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.61 Total: -57.25 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: 0.28 Total: -6.39 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.85 -8.30 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485723406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.350 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds