Wall clock time and date at job start Tue Mar 31 2020 19:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46938 * 2 1 4 4 C 1.53000 * 109.47375 * 240.00038 * 2 1 3 5 5 C 1.52991 * 109.46974 * 174.99893 * 4 2 1 6 6 C 1.53003 * 109.47025 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.47316 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99984 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00351 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00185 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99893 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.46882 * 89.99669 * 12 10 8 14 14 H 1.48494 * 109.46906 * 209.99557 * 12 10 8 15 15 H 1.48501 * 109.46910 * 329.99553 * 12 10 8 16 16 N 1.46497 * 109.46991 * 119.99625 * 2 1 3 17 17 C 1.34781 * 120.00189 * 274.99956 * 16 2 1 18 18 O 1.21610 * 119.99926 * 0.02562 * 17 16 2 19 19 C 1.47402 * 119.99982 * 180.02562 * 17 16 2 20 20 C 1.37356 * 128.56219 * 0.16472 * 19 17 16 21 21 O 1.33500 * 106.33606 * 180.23665 * 20 19 17 22 22 N 1.20658 * 113.15990 * 359.74016 * 21 20 19 23 23 C 1.30011 * 112.29690 * 0.02562 * 22 21 20 24 24 C 1.50701 * 127.33219 * 179.97438 * 23 22 21 25 25 C 1.53876 * 110.03013 * 60.03089 * 24 23 22 26 26 C 1.54267 * 106.59870 * 240.71414 * 25 24 23 27 27 C 1.54891 * 104.19324 * 336.39035 * 26 25 24 28 28 C 1.54261 * 110.03593 * 302.86175 * 24 23 22 29 29 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47741 * 299.99857 * 1 2 3 31 31 H 1.09005 * 109.47028 * 60.00142 * 1 2 3 32 32 H 1.08999 * 109.46589 * 295.00155 * 4 2 1 33 33 H 1.09001 * 109.46750 * 54.99787 * 4 2 1 34 34 H 1.08999 * 109.47676 * 299.99596 * 5 4 2 35 35 H 1.09001 * 109.47469 * 60.00334 * 5 4 2 36 36 H 1.08993 * 109.47395 * 300.00028 * 6 5 4 37 37 H 1.09006 * 109.46845 * 60.00233 * 6 5 4 38 38 H 0.97002 * 120.00173 * 0.02562 * 7 6 5 39 39 H 0.96998 * 120.00229 * 180.02562 * 11 10 8 40 40 H 0.97002 * 120.00330 * 95.00722 * 16 2 1 41 41 H 1.07997 * 126.83657 * 359.97438 * 20 19 17 42 42 H 1.08998 * 110.05533 * 181.43992 * 24 23 22 43 43 H 1.08995 * 110.03160 * 359.97438 * 25 24 23 44 44 H 1.08998 * 110.03319 * 121.42692 * 25 24 23 45 45 H 1.09004 * 110.48597 * 95.06674 * 26 25 24 46 46 H 1.08994 * 110.48679 * 217.71200 * 26 25 24 47 47 H 1.09005 * 110.75269 * 279.62515 * 27 26 25 48 48 H 1.09004 * 110.91555 * 156.33330 * 27 26 25 49 49 H 1.09000 * 110.48928 * 261.57113 * 28 24 23 50 50 H 1.08999 * 110.48469 * 24.21522 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0749 -1.3350 -2.5625 7 7 5.5349 -1.2310 -2.6245 8 6 6.2187 -1.8052 -3.6628 9 1 5.6817 -2.3342 -4.4361 10 6 7.6021 -1.7062 -3.7218 11 7 8.2593 -2.2576 -4.7200 12 14 8.5309 -0.7905 -2.3845 13 1 8.8931 -1.7353 -1.2977 14 1 9.7661 -0.1976 -2.9570 15 1 7.6717 0.2893 -1.8358 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3572 18 8 1.8573 1.1617 2.4118 19 6 2.6388 -0.7128 3.5606 20 6 3.0159 -2.0265 3.6969 21 8 3.3803 -2.1823 4.9717 22 7 3.2860 -1.1687 5.6194 23 6 2.8496 -0.1696 4.9113 24 6 2.6060 1.2430 5.3765 25 6 3.9146 1.8572 5.9040 26 6 3.6688 2.2130 7.3849 27 6 2.1312 2.3686 7.4880 28 6 1.6108 1.2470 6.5551 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3573 35 1 3.9994 -1.0727 -0.4259 36 1 3.7866 -2.3852 -2.5184 37 1 3.6403 -0.8758 -3.4505 38 1 6.0173 -0.7555 -1.9301 39 1 9.2260 -2.1888 -4.7610 40 1 2.2491 -1.6317 1.1527 41 1 3.0136 -2.7840 2.9271 42 1 2.2154 1.8447 4.5559 43 1 4.7256 1.1334 5.8239 44 1 4.1590 2.7569 5.3394 45 1 4.0151 1.4080 8.0332 46 1 4.1650 3.1494 7.6396 47 1 1.8171 3.3480 7.1270 48 1 1.7916 2.2086 8.5113 49 1 0.6050 1.4786 6.2044 50 1 1.6246 0.2861 7.0694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485723406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:21 Heat of formation + Delta-G solvation = -14.188122 kcal Electronic energy + Delta-G solvation = -28831.376171 eV Core-core repulsion = 24860.140288 eV Total energy + Delta-G solvation = -3971.235883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.98575 -40.85536 -39.26852 -38.00049 -36.62096 -34.82031 -34.27710 -33.45174 -32.35627 -30.99314 -29.72211 -29.71636 -27.37454 -25.99129 -24.37170 -23.57307 -22.59844 -22.15308 -21.68725 -21.54879 -20.58250 -19.62383 -19.28054 -18.71271 -17.78730 -17.35202 -16.73205 -16.61308 -16.27850 -16.05011 -15.83754 -15.73274 -15.30601 -14.94528 -14.65693 -14.48698 -14.39895 -14.36778 -13.88984 -13.58279 -13.49174 -13.10900 -12.92925 -12.84458 -12.79291 -12.48068 -12.21798 -12.11721 -12.10121 -12.04513 -12.01131 -11.87562 -11.78994 -11.66941 -11.57730 -11.53663 -11.08068 -10.97136 -10.91801 -10.78691 -10.12148 -9.29553 -8.04118 -5.37116 0.06041 0.70981 1.36482 1.39158 1.46729 1.87061 2.13107 2.27946 2.46647 2.92536 3.18758 3.27477 3.50366 3.62965 3.63373 3.84917 3.86020 3.90722 4.03700 4.11766 4.18566 4.38308 4.41367 4.41526 4.49997 4.52689 4.57349 4.65090 4.66184 4.72288 4.81183 4.83881 4.87297 4.90052 4.92529 4.97125 5.02280 5.14350 5.15919 5.18018 5.29565 5.33262 5.36129 5.39777 5.44482 5.55282 5.75485 6.20704 6.46784 7.07471 7.13015 7.19596 7.85218 8.02394 9.17432 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.002582 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.112854 B =10842.029511 C =12065.698366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.235 4.235 9 H 0.058 0.942 10 C -0.066 4.066 11 N -0.984 5.984 12 Si 0.955 3.045 13 H -0.275 1.275 14 H -0.296 1.296 15 H -0.256 1.256 16 N -0.702 5.702 17 C 0.597 3.403 18 O -0.568 6.568 19 C -0.282 4.282 20 C 0.027 3.973 21 O 0.096 5.904 22 N -0.373 5.373 23 C 0.066 3.934 24 C -0.025 4.025 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.111 4.111 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.021 0.979 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.414 0.586 41 H 0.274 0.726 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.971 4.353 24.464 31.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.025 3.975 7 N -0.409 5.409 8 C -0.366 4.366 9 H 0.076 0.924 10 C -0.257 4.257 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.201 1.201 14 H -0.223 1.223 15 H -0.181 1.181 16 N -0.354 5.354 17 C 0.384 3.616 18 O -0.448 6.448 19 C -0.290 4.290 20 C -0.055 4.055 21 O 0.037 5.963 22 N -0.080 5.080 23 C -0.097 4.097 24 C -0.045 4.045 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.150 4.150 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.251 0.749 41 H 0.289 0.711 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.814 4.876 25.542 32.096 hybrid contribution 1.006 0.189 -0.714 1.248 sum -17.808 5.066 24.828 30.972 Atomic orbital electron populations 1.22110 0.93842 1.03142 1.02333 1.21006 0.94724 0.96722 0.83293 0.91289 1.21761 0.93566 1.02555 0.97027 1.21674 0.96678 1.00048 0.97240 1.20867 0.81920 0.98063 0.96618 1.42813 1.03917 1.66479 1.27658 1.19076 0.90128 1.26087 1.01288 0.92393 1.25525 0.97369 1.02261 1.00555 1.69879 1.07498 1.51641 1.34405 0.85407 0.78044 0.79160 0.79144 1.20132 1.22329 1.18083 1.45837 1.66426 1.14589 1.08581 1.16965 0.76810 0.85604 0.82203 1.90753 1.52087 1.16771 1.85202 1.22363 1.15004 0.95766 0.95864 1.27265 0.92735 0.97548 0.87944 1.84577 1.62874 1.29697 1.19126 1.73636 1.20316 0.94060 1.19978 1.25002 0.97936 0.97616 0.89147 1.20482 0.97464 0.87062 0.99467 1.22189 0.95397 1.00251 0.97457 1.22347 0.96753 1.01877 0.94738 1.22495 0.94881 0.98422 0.99796 1.22412 0.98011 0.99836 0.94700 0.90756 0.93842 0.90338 0.88919 0.89100 0.93023 0.91421 0.94930 0.96063 0.80315 0.93328 0.74889 0.71080 0.88495 0.93089 0.90942 0.91814 0.90138 0.90466 0.90026 0.90948 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.48 71.98 0.68 -1.56 16 2 C 0.15 2.49 2.57 44.99 0.12 2.60 16 3 H 0.07 1.53 7.58 -2.38 -0.02 1.51 16 4 C -0.11 -1.82 4.75 30.59 0.15 -1.68 16 5 C -0.12 -2.92 5.22 30.59 0.16 -2.76 16 6 C 0.15 5.21 6.26 86.38 0.54 5.75 16 7 N -0.76 -34.94 5.41 -343.45 -1.86 -36.80 16 8 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 9 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 10 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 11 N -0.98 -63.04 13.97 21.65 0.30 -62.74 16 12 Si 0.96 45.57 27.74 68.60 1.90 47.48 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 16 N -0.70 -11.00 4.53 -445.82 -2.02 -13.02 16 17 C 0.60 12.98 7.78 86.66 0.67 13.65 16 18 O -0.57 -16.54 14.94 -4.06 -0.06 -16.60 16 19 C -0.28 -5.46 6.47 -18.75 -0.12 -5.58 16 20 C 0.03 0.33 11.85 67.61 0.80 1.13 16 21 O 0.10 1.68 11.06 76.92 0.85 2.53 16 22 N -0.37 -8.24 11.82 -44.80 -0.53 -8.77 16 23 C 0.07 1.46 5.79 45.16 0.26 1.73 16 24 C -0.03 -0.54 3.37 -10.82 -0.04 -0.58 16 25 C -0.11 -2.23 6.45 31.32 0.20 -2.03 16 26 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 27 C -0.12 -1.64 6.91 31.89 0.22 -1.42 16 28 C -0.11 -1.96 6.35 31.67 0.20 -1.75 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.57 7.75 -2.39 -0.02 1.55 16 36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.36 16.03 5.53 -92.71 -0.51 15.52 16 39 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.41 3.85 7.79 -92.71 -0.72 3.13 16 41 H 0.27 0.25 7.68 -2.91 -0.02 0.23 16 42 H 0.10 2.38 6.34 -2.39 -0.02 2.37 16 43 H 0.05 1.12 7.67 -2.39 -0.02 1.10 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 50 H 0.06 1.17 7.70 -2.39 -0.02 1.15 16 Total: -1.00 -77.90 404.63 3.65 -74.25 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.35 Total: 23.64 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.41 Total: -9.97 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.10 Total: -121.33 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.79 Total: -14.07 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.48 kcal Total: -77.90 3.65 -74.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485723406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.061 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds