Wall clock time and date at job start Tue Mar 31 2020 18:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46766 * 2 1 4 4 C 1.50701 * 109.47111 * 119.99947 * 2 1 3 5 5 O 1.21282 * 119.99610 * 120.00048 * 4 2 1 6 6 N 1.34777 * 119.99677 * 299.99930 * 4 2 1 7 7 C 1.46505 * 119.99305 * 180.02562 * 6 4 2 8 8 C 1.50703 * 109.46784 * 180.02562 * 7 6 4 9 9 C 1.29823 * 118.55903 * 94.99514 * 8 7 6 10 10 C 1.50140 * 123.28749 * 180.39016 * 9 8 7 11 11 N 1.46846 * 110.27590 * 342.93553 * 10 9 8 12 12 C 1.46899 * 111.00302 * 174.31282 * 11 10 9 13 13 C 1.50698 * 109.46987 * 66.03980 * 12 11 10 14 14 O 1.21293 * 120.00006 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99773 * 179.72591 * 15 13 12 17 17 H 1.08002 * 119.99671 * 0.27660 * 16 15 13 18 18 C 1.38950 * 120.00030 * 180.27703 * 16 15 13 19 19 N 1.31414 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47403 * 120.00325 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00122 * 20 18 16 24 24 C 1.47239 * 110.20601 * 50.91850 * 11 10 9 25 25 C 1.50311 * 118.54939 * 275.02136 * 8 7 6 26 26 C 1.53001 * 109.46822 * 240.00052 * 2 1 3 27 27 C 1.53002 * 117.49773 * 128.62229 * 26 2 1 28 28 C 1.53002 * 117.49752 * 60.00070 * 26 2 1 29 29 H 1.09003 * 109.47265 * 300.00137 * 1 2 3 30 30 H 1.09002 * 109.47638 * 60.00002 * 1 2 3 31 31 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 32 32 H 0.96995 * 120.00499 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47150 * 60.00098 * 7 6 4 34 34 H 1.09003 * 109.47146 * 299.99438 * 7 6 4 35 35 H 1.08001 * 118.35167 * 0.37934 * 9 8 7 36 36 H 1.08998 * 109.34082 * 222.68723 * 10 9 8 37 37 H 1.09003 * 109.33334 * 103.17518 * 10 9 8 38 38 H 1.09003 * 109.46477 * 306.04469 * 12 11 10 39 39 H 1.08993 * 109.47002 * 186.04796 * 12 11 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 41 41 H 0.96999 * 119.99863 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.63934 * 50.89479 * 24 11 10 43 43 H 1.08999 * 109.63492 * 171.50188 * 24 11 10 44 44 H 1.09006 * 109.42858 * 283.57665 * 25 8 7 45 45 H 1.08998 * 109.43146 * 43.42197 * 25 8 7 46 46 H 1.08991 * 115.55063 * 274.32575 * 26 2 1 47 47 H 1.09003 * 117.49713 * 0.02562 * 27 26 2 48 48 H 1.08991 * 117.50167 * 145.01533 * 27 26 2 49 49 H 1.09000 * 117.49358 * 214.97353 * 28 26 2 50 50 H 1.08996 * 117.50076 * 359.97120 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2499 2.4545 7 6 2.1956 -0.9402 3.6507 8 6 1.6926 -0.2302 4.8812 9 6 0.6054 -0.6605 5.4452 10 6 0.0058 -0.0288 6.6682 11 7 0.9956 0.8252 7.3370 12 6 0.3889 1.5562 8.4575 13 6 -0.0249 0.5803 9.5286 14 8 0.1672 -0.6073 9.3740 15 7 -0.6074 1.0274 10.6588 16 6 -0.9890 0.1390 11.6309 17 1 -0.8187 -0.9185 11.4929 18 6 -1.5948 0.5993 12.7936 19 7 -1.8025 1.8861 12.9612 20 14 -2.1141 -0.6109 14.1183 21 1 -1.7709 -1.9908 13.6902 22 1 -1.4039 -0.2947 15.3836 23 1 -3.5797 -0.5092 14.3347 24 6 1.6036 1.7532 6.3689 25 6 2.4717 0.9454 5.4011 26 6 2.0399 -0.7213 -1.2493 27 6 3.0741 0.0052 -2.1117 28 6 1.6356 -0.1495 -2.6096 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.1488 0.5385 2.5436 33 1 3.2855 -0.9398 3.6505 34 1 1.8326 -1.9680 3.6509 35 1 0.1071 -1.5156 5.0128 36 1 -0.3198 -0.8099 7.3552 37 1 -0.8541 0.5748 6.3779 38 1 -0.4867 2.1009 8.1042 39 1 1.1136 2.2598 8.8671 40 1 -0.7607 1.9771 10.7826 41 1 -2.2251 2.2075 13.7730 42 1 0.8199 2.2688 5.8139 43 1 2.2216 2.4798 6.8964 44 1 3.3605 0.5895 5.9223 45 1 2.7712 1.5795 4.5667 46 1 2.1267 -1.8044 -1.1643 47 1 3.3914 0.9967 -1.7889 48 1 3.8415 -0.6000 -2.5942 49 1 1.4568 -0.8565 -3.4196 50 1 1.0060 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486507135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:25 Heat of formation + Delta-G solvation = -33.973386 kcal Electronic energy + Delta-G solvation = -28155.938896 eV Core-core repulsion = 24183.845060 eV Total energy + Delta-G solvation = -3972.093836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35300 -39.32167 -37.93641 -37.47316 -35.46259 -33.96463 -33.34096 -32.15623 -31.23594 -30.77984 -28.43144 -26.17806 -25.26404 -24.14844 -23.60150 -22.64691 -22.08105 -21.42954 -20.00254 -19.24701 -18.08269 -17.89658 -17.30385 -16.44652 -16.15458 -15.80324 -15.58864 -15.23376 -14.90141 -14.66372 -14.61193 -14.24994 -13.87307 -13.86011 -13.78261 -13.61754 -13.26470 -12.90826 -12.74816 -12.60367 -12.41592 -12.25044 -12.15040 -11.87824 -11.82270 -11.51282 -11.37876 -11.33865 -11.11874 -10.89496 -10.73458 -10.48377 -10.39823 -10.35069 -10.23472 -10.01411 -9.51558 -9.27194 -8.89667 -8.49082 -7.99735 -7.86122 -6.43273 -3.83976 1.98055 2.42749 3.10371 3.15291 3.26179 3.33311 3.48054 3.87842 3.96334 4.18415 4.23204 4.33856 4.50054 4.55183 4.67402 4.70877 4.83175 4.97938 5.00935 5.03418 5.20367 5.23010 5.24000 5.29779 5.30257 5.39017 5.44840 5.50672 5.52471 5.53913 5.65305 5.66835 5.72076 5.74042 5.76780 5.88920 5.93392 5.94032 6.08995 6.20593 6.22604 6.31808 6.43210 6.89802 7.27228 7.29844 7.32433 7.54215 8.00444 8.05299 8.60284 9.16953 9.52957 10.04656 10.74506 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033075 B = 0.001681 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.347284 B =16648.367618 C =16746.911996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.096 0.904 4 C 0.517 3.483 5 O -0.539 6.539 6 N -0.724 5.724 7 C 0.158 3.842 8 C -0.156 4.156 9 C -0.107 4.107 10 C 0.073 3.927 11 N -0.509 5.509 12 C 0.045 3.955 13 C 0.443 3.557 14 O -0.577 6.577 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.050 3.950 25 C -0.071 4.071 26 C -0.135 4.135 27 C -0.178 4.178 28 C -0.178 4.178 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 3.548 -26.413 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.114 0.886 4 C 0.303 3.697 5 O -0.415 6.415 6 N -0.376 5.376 7 C 0.036 3.964 8 C -0.157 4.157 9 C -0.126 4.126 10 C -0.054 4.054 11 N -0.233 5.233 12 C -0.087 4.087 13 C 0.229 3.771 14 O -0.461 6.461 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.078 4.078 25 C -0.108 4.108 26 C -0.154 4.154 27 C -0.215 4.215 28 C -0.215 4.215 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.134 0.866 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.675 1.807 -26.223 26.891 hybrid contribution -1.258 1.023 0.630 1.739 sum 4.418 2.830 -25.593 26.126 Atomic orbital electron populations 1.21761 0.92466 1.03085 1.02659 1.20864 0.97466 0.99927 0.91883 0.88601 1.20550 0.80017 0.84614 0.84481 1.90699 1.37744 1.26331 1.86737 1.46142 1.53783 1.32296 1.05406 1.20322 0.99329 0.95334 0.81448 1.20845 0.97849 0.99795 0.97190 1.22343 0.96068 0.98662 0.95533 1.21253 0.92137 0.97999 0.94031 1.62030 1.32565 1.20645 1.08072 1.21908 0.98582 0.95806 0.92362 1.19738 0.84010 0.89320 0.84081 1.90484 1.59205 1.16834 1.79619 1.41875 1.52753 1.10053 1.15403 1.19755 1.35497 0.91859 0.95669 0.87837 1.25258 0.97417 0.96593 0.98678 1.69620 1.43669 1.12787 1.28252 0.85804 0.78065 0.80385 0.80120 1.19215 1.20753 1.20796 1.22216 0.97541 0.94319 0.93744 1.20392 0.98412 0.94387 0.97605 1.22046 1.03504 1.00161 0.89660 1.23011 0.92596 1.01852 1.04010 1.22977 0.98168 1.03252 0.97136 0.92001 0.91270 0.91810 0.76557 0.91001 0.91110 0.87182 0.86462 0.94210 0.93450 0.89188 0.77507 0.91939 0.94913 0.90425 0.90071 0.91251 0.86603 0.88891 0.88730 0.88684 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.93 37.16 0.33 -0.47 16 2 C -0.08 -0.57 2.88 -91.77 -0.26 -0.84 16 3 H 0.10 0.55 7.90 -51.93 -0.41 0.14 16 4 C 0.52 5.30 7.15 -10.98 -0.08 5.22 16 5 O -0.54 -7.72 15.65 5.56 0.09 -7.63 16 6 N -0.72 -6.42 5.44 -61.47 -0.33 -6.75 16 7 C 0.16 1.68 5.72 -5.19 -0.03 1.65 16 8 C -0.16 -1.76 5.26 -100.92 -0.53 -2.29 16 9 C -0.11 -1.36 9.50 -35.97 -0.34 -1.70 16 10 C 0.07 1.13 5.22 -5.28 -0.03 1.11 16 11 N -0.51 -8.19 4.46 -237.58 -1.06 -9.25 16 12 C 0.04 0.77 5.44 -4.98 -0.03 0.74 16 13 C 0.44 10.21 7.54 -10.99 -0.08 10.13 16 14 O -0.58 -15.23 13.88 5.55 0.08 -15.15 16 15 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 16 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 20 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.05 0.60 5.59 -3.61 -0.02 0.58 16 25 C -0.07 -0.76 6.04 -28.04 -0.17 -0.93 16 26 C -0.14 -1.06 4.76 -90.62 -0.43 -1.49 16 27 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 28 C -0.18 -1.05 9.73 -26.73 -0.26 -1.31 16 29 H 0.06 0.30 7.56 -51.93 -0.39 -0.10 16 30 H 0.07 0.31 7.29 -51.93 -0.38 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 2.70 7.88 -40.82 -0.32 2.38 16 33 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.07 0.82 7.85 -51.93 -0.41 0.42 16 35 H 0.11 1.28 7.81 -52.49 -0.41 0.87 16 36 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 37 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 39 H 0.09 1.40 7.94 -51.93 -0.41 0.99 16 40 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.12 1.14 7.47 -51.93 -0.39 0.75 16 47 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.46 7.61 -51.93 -0.39 0.06 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -32.57 405.40 -10.20 -42.77 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.28 Total: 10.62 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.44 Total: 1.05 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.73 Total: -53.62 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.57 -10.20 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486507135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.795 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds