Wall clock time and date at job start Tue Mar 31 2020 19:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.53000 * 109.47080 * 119.99664 * 2 1 3 5 5 O 1.42901 * 109.47056 * 65.00298 * 4 2 1 6 6 C 1.35426 * 117.00516 * 179.97438 * 5 4 2 7 7 N 1.32243 * 119.79629 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.79876 * 180.02562 * 7 6 5 9 9 C 1.38355 * 121.18579 * 359.97438 * 8 7 6 10 10 C 1.38328 * 119.45836 * 0.27651 * 9 8 7 11 11 C 1.39993 * 118.35307 * 359.50599 * 10 9 8 12 12 C 1.47525 * 120.60412 * 180.26310 * 11 10 9 13 13 O 1.21588 * 120.00070 * 180.21286 * 12 11 10 14 14 N 1.34780 * 119.99533 * 0.20781 * 12 11 10 15 15 C 1.46496 * 119.99925 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47578 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47598 * 180.02562 * 16 15 14 18 18 H 1.08997 * 109.47258 * 54.99423 * 17 16 15 19 19 C 1.52997 * 109.47197 * 175.00053 * 17 16 15 20 20 N 1.46498 * 109.46667 * 294.99836 * 17 16 15 21 21 C 1.36938 * 120.00259 * 154.99938 * 20 17 16 22 22 H 1.08008 * 119.99764 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00644 * 179.97438 * 21 20 17 24 24 N 1.31618 * 120.00233 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99609 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46927 * 90.00134 * 25 23 21 27 27 H 1.48502 * 109.46998 * 210.00137 * 25 23 21 28 28 H 1.48499 * 109.47298 * 330.00028 * 25 23 21 29 29 H 1.08997 * 109.47451 * 300.00233 * 1 2 3 30 30 H 1.09004 * 109.46914 * 60.00111 * 1 2 3 31 31 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47788 * 239.99795 * 2 1 3 33 33 H 1.09000 * 109.47549 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47479 * 300.00440 * 3 2 1 35 35 H 1.09013 * 109.46938 * 59.99823 * 3 2 1 36 36 H 1.08996 * 109.47344 * 305.00165 * 4 2 1 37 37 H 1.09007 * 109.47376 * 184.99708 * 4 2 1 38 38 H 1.07998 * 119.40657 * 179.97438 * 8 7 6 39 39 H 1.08002 * 120.26680 * 179.97438 * 9 8 7 40 40 H 1.08001 * 120.82512 * 179.74838 * 10 9 8 41 41 H 0.96996 * 120.00298 * 0.02562 * 14 12 11 42 42 H 1.08998 * 109.47412 * 300.00524 * 15 14 12 43 43 H 1.09002 * 109.47283 * 60.00157 * 15 14 12 44 44 H 1.09006 * 109.46766 * 300.00237 * 16 15 14 45 45 H 1.09002 * 109.46943 * 59.99633 * 16 15 14 46 46 H 1.09005 * 109.47344 * 59.99834 * 19 17 16 47 47 H 1.08999 * 109.46884 * 179.97438 * 19 17 16 48 48 H 1.08996 * 109.47195 * 299.99638 * 19 17 16 49 49 H 0.97001 * 120.00464 * 334.99709 * 20 17 16 50 50 H 0.97002 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0391 -2.8829 2.2293 7 7 2.7253 -2.3615 3.2323 8 6 3.1131 -3.0892 4.2615 9 6 2.8164 -4.4385 4.3374 10 6 2.1052 -5.0372 3.3131 11 6 1.6999 -4.2441 2.2330 12 6 0.9341 -4.8301 1.1166 13 8 0.5910 -4.1319 0.1821 14 7 0.6148 -6.1394 1.1325 15 6 -0.1462 -6.7213 0.0242 16 6 -0.3737 -8.2111 0.2883 17 6 -1.1680 -8.8189 -0.8695 18 1 -0.6528 -8.6177 -1.8087 19 6 -1.2882 -10.3307 -0.6673 20 7 -2.5060 -8.2237 -0.9093 21 6 -3.2070 -8.1928 -2.0853 22 1 -2.7736 -8.6077 -2.9833 23 6 -4.4750 -7.6293 -2.1229 24 7 -5.1489 -7.6001 -3.2531 25 14 -5.2249 -6.9124 -0.5695 26 1 -4.8610 -5.4767 -0.4612 27 1 -6.7029 -7.0455 -0.6263 28 1 -4.7070 -7.6449 0.6139 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.6723 -2.6236 5.0595 39 1 3.1417 -5.0204 5.1870 40 1 1.8650 -6.0896 3.3476 41 1 0.8882 -6.6963 1.8781 42 1 -1.1086 -6.2166 -0.0603 43 1 0.4116 -6.5976 -0.9041 44 1 0.5886 -8.7161 0.3730 45 1 -0.9317 -8.3344 1.2165 46 1 -1.8035 -10.5319 0.2719 47 1 -1.8544 -10.7637 -1.4920 48 1 -0.2927 -10.7736 -0.6377 49 1 -2.8955 -7.8514 -0.1027 50 1 -6.0349 -7.2060 -3.2795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492113334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:15 Heat of formation + Delta-G solvation = -39.353271 kcal Electronic energy + Delta-G solvation = -28880.980589 eV Core-core repulsion = 24908.653464 eV Total energy + Delta-G solvation = -3972.327125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13173 -39.16672 -38.42258 -36.72137 -35.46823 -34.46037 -33.06242 -32.12629 -30.96335 -29.72842 -28.32504 -27.29860 -26.79931 -25.01321 -23.68028 -23.19810 -22.35694 -20.89199 -20.35984 -19.88509 -18.80870 -17.85704 -17.38425 -17.21953 -16.48558 -15.65030 -15.47252 -15.32342 -15.04910 -14.66832 -14.50872 -14.35368 -13.98716 -13.70382 -13.47565 -13.36606 -13.21607 -12.87830 -12.81834 -12.59693 -12.49952 -12.34339 -12.19541 -11.92029 -11.60069 -11.22780 -11.21711 -11.02314 -10.91442 -10.80177 -10.77124 -10.64021 -10.40177 -10.28736 -10.25582 -10.02213 -9.62032 -9.54266 -8.97421 -8.89152 -8.72243 -7.23895 -5.72700 -3.08172 0.40826 0.91572 2.75633 2.85536 3.16415 3.40683 3.44578 3.49631 3.62506 3.94011 4.35230 4.50042 4.55868 4.63418 4.64935 4.67970 4.79081 4.97203 5.08687 5.17799 5.23358 5.24045 5.28971 5.35667 5.45900 5.49722 5.53261 5.61532 5.64850 5.68088 5.68624 5.75399 5.90139 5.95773 5.96779 6.08590 6.13186 6.25108 6.27977 6.29693 6.37878 6.49936 6.60446 6.79301 6.98674 7.04823 7.41606 7.59627 8.03238 8.33094 8.46263 9.24561 9.97176 10.16190 11.45823 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.002969 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.029177 B = 9429.538579 C =11272.841700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.070 3.930 5 O -0.264 6.264 6 C 0.374 3.626 7 N -0.547 5.547 8 C 0.163 3.837 9 C -0.223 4.223 10 C -0.010 4.010 11 C -0.207 4.207 12 C 0.556 3.444 13 O -0.508 6.508 14 N -0.728 5.728 15 C 0.123 3.877 16 C -0.136 4.136 17 C 0.180 3.820 18 H 0.059 0.941 19 C -0.164 4.164 20 N -0.748 5.748 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.393 0.607 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.059 0.941 48 H 0.039 0.961 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.770 10.067 17.644 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.005 4.005 5 O -0.168 6.168 6 C 0.194 3.806 7 N -0.271 5.271 8 C 0.006 3.994 9 C -0.243 4.243 10 C -0.036 4.036 11 C -0.213 4.213 12 C 0.342 3.658 13 O -0.383 6.383 14 N -0.381 5.381 15 C 0.000 4.000 16 C -0.175 4.175 17 C 0.070 3.930 18 H 0.077 0.923 19 C -0.224 4.224 20 N -0.391 5.391 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.227 0.773 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.458 11.416 16.357 28.573 hybrid contribution -0.638 -0.583 1.752 1.954 sum 19.820 10.833 18.109 28.950 Atomic orbital electron populations 1.21831 0.94096 1.03275 1.01419 1.21150 0.97287 0.95569 0.97455 1.21766 1.00979 0.94891 1.02409 1.22845 0.99872 0.78670 0.99109 1.86538 1.71131 1.21459 1.37643 1.19863 0.87281 0.87718 0.85721 1.67516 1.16347 1.39979 1.03282 1.22653 0.92564 0.90756 0.93414 1.21908 1.04485 0.96662 1.01292 1.21652 0.91523 0.99731 0.90674 1.20139 1.08975 0.92589 0.99602 1.17759 0.80010 0.82209 0.85869 1.90876 1.52612 1.59956 1.34869 1.45990 1.57760 1.09317 1.25025 1.21455 0.96660 0.93427 0.88443 1.22115 1.00577 0.94177 1.00604 1.20121 0.86296 0.91051 0.95554 0.92329 1.22395 0.99567 0.98633 1.01782 1.42826 1.15234 1.71828 1.09246 1.19057 0.97339 1.32727 0.87972 0.89177 1.24647 0.97024 1.01012 0.96331 1.69696 1.13314 1.50649 1.24561 0.86602 0.78687 0.79572 0.83974 1.20983 1.21823 1.20448 0.93063 0.92449 0.91149 0.89917 0.92502 0.91697 0.92452 0.91606 0.91681 0.81957 0.83915 0.83822 0.77323 0.90219 0.91221 0.91415 0.91752 0.93670 0.92237 0.94235 0.80720 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.09 37.15 0.34 -1.39 16 2 C -0.10 -1.01 3.16 -90.63 -0.29 -1.30 16 3 C -0.14 -1.12 9.19 37.16 0.34 -0.77 16 4 C 0.07 0.80 4.69 37.16 0.17 0.98 16 5 O -0.26 -3.89 7.75 -39.74 -0.31 -4.20 16 6 C 0.37 5.03 7.51 -16.61 -0.12 4.90 16 7 N -0.55 -6.11 9.21 -12.98 -0.12 -6.23 16 8 C 0.16 1.27 11.17 -17.49 -0.20 1.07 16 9 C -0.22 -1.49 10.09 -39.51 -0.40 -1.89 16 10 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 11 C -0.21 -2.60 5.90 -104.69 -0.62 -3.22 16 12 C 0.56 8.60 7.77 -12.47 -0.10 8.50 16 13 O -0.51 -10.11 15.19 -16.48 -0.25 -10.36 16 14 N -0.73 -9.47 5.51 -61.36 -0.34 -9.81 16 15 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 16 C -0.14 -1.90 4.87 -26.73 -0.13 -2.03 16 17 C 0.18 3.27 2.89 -67.93 -0.20 3.07 16 18 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 19 C -0.16 -2.72 9.49 37.16 0.35 -2.36 16 20 N -0.75 -17.29 4.38 -53.43 -0.23 -17.53 16 21 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 22 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.75 13.97 55.49 0.78 -28.97 16 25 Si 0.88 22.59 27.74 -169.99 -4.71 17.87 16 26 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.02 7.82 -51.93 -0.41 0.62 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.14 0.77 6.52 -52.49 -0.34 0.43 16 41 H 0.39 3.60 6.57 -40.82 -0.27 3.33 16 42 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 50 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -35.95 410.20 -8.92 -44.87 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.42 Total: 8.02 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.49 Total: 0.15 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.08 Total: -62.53 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.56 Total: -14.56 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.95 -8.92 -44.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492113334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.512 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds