Wall clock time and date at job start Tue Mar 31 2020 19:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.53000 * 109.47080 * 119.99664 * 2 1 3 5 5 O 1.42901 * 109.47056 * 65.00298 * 4 2 1 6 6 C 1.35426 * 117.00516 * 179.97438 * 5 4 2 7 7 N 1.32243 * 119.79629 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.79876 * 180.02562 * 7 6 5 9 9 C 1.38355 * 121.18579 * 359.97438 * 8 7 6 10 10 C 1.38328 * 119.45836 * 0.27651 * 9 8 7 11 11 C 1.39993 * 118.35307 * 359.50599 * 10 9 8 12 12 C 1.47525 * 120.60412 * 180.26310 * 11 10 9 13 13 O 1.21588 * 120.00070 * 180.21286 * 12 11 10 14 14 N 1.34780 * 119.99533 * 0.20781 * 12 11 10 15 15 C 1.46496 * 119.99925 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47578 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47598 * 180.02562 * 16 15 14 18 18 H 1.08997 * 109.47258 * 54.99423 * 17 16 15 19 19 C 1.52997 * 109.47197 * 175.00053 * 17 16 15 20 20 N 1.46498 * 109.46667 * 294.99836 * 17 16 15 21 21 C 1.36938 * 120.00259 * 154.99938 * 20 17 16 22 22 H 1.08008 * 119.99764 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00644 * 179.97438 * 21 20 17 24 24 N 1.31618 * 120.00233 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99609 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46927 * 90.00134 * 25 23 21 27 27 H 1.48502 * 109.46998 * 210.00137 * 25 23 21 28 28 H 1.48499 * 109.47298 * 330.00028 * 25 23 21 29 29 H 1.08997 * 109.47451 * 300.00233 * 1 2 3 30 30 H 1.09004 * 109.46914 * 60.00111 * 1 2 3 31 31 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47788 * 239.99795 * 2 1 3 33 33 H 1.09000 * 109.47549 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47479 * 300.00440 * 3 2 1 35 35 H 1.09013 * 109.46938 * 59.99823 * 3 2 1 36 36 H 1.08996 * 109.47344 * 305.00165 * 4 2 1 37 37 H 1.09007 * 109.47376 * 184.99708 * 4 2 1 38 38 H 1.07998 * 119.40657 * 179.97438 * 8 7 6 39 39 H 1.08002 * 120.26680 * 179.97438 * 9 8 7 40 40 H 1.08001 * 120.82512 * 179.74838 * 10 9 8 41 41 H 0.96996 * 120.00298 * 0.02562 * 14 12 11 42 42 H 1.08998 * 109.47412 * 300.00524 * 15 14 12 43 43 H 1.09002 * 109.47283 * 60.00157 * 15 14 12 44 44 H 1.09006 * 109.46766 * 300.00237 * 16 15 14 45 45 H 1.09002 * 109.46943 * 59.99633 * 16 15 14 46 46 H 1.09005 * 109.47344 * 59.99834 * 19 17 16 47 47 H 1.08999 * 109.46884 * 179.97438 * 19 17 16 48 48 H 1.08996 * 109.47195 * 299.99638 * 19 17 16 49 49 H 0.97001 * 120.00464 * 334.99709 * 20 17 16 50 50 H 0.97002 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0391 -2.8829 2.2293 7 7 2.7253 -2.3615 3.2323 8 6 3.1131 -3.0892 4.2615 9 6 2.8164 -4.4385 4.3374 10 6 2.1052 -5.0372 3.3131 11 6 1.6999 -4.2441 2.2330 12 6 0.9341 -4.8301 1.1166 13 8 0.5910 -4.1319 0.1821 14 7 0.6148 -6.1394 1.1325 15 6 -0.1462 -6.7213 0.0242 16 6 -0.3737 -8.2111 0.2883 17 6 -1.1680 -8.8189 -0.8695 18 1 -0.6528 -8.6177 -1.8087 19 6 -1.2882 -10.3307 -0.6673 20 7 -2.5060 -8.2237 -0.9093 21 6 -3.2070 -8.1928 -2.0853 22 1 -2.7736 -8.6077 -2.9833 23 6 -4.4750 -7.6293 -2.1229 24 7 -5.1489 -7.6001 -3.2531 25 14 -5.2249 -6.9124 -0.5695 26 1 -4.8610 -5.4767 -0.4612 27 1 -6.7029 -7.0455 -0.6263 28 1 -4.7070 -7.6449 0.6139 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.6723 -2.6236 5.0595 39 1 3.1417 -5.0204 5.1870 40 1 1.8650 -6.0896 3.3476 41 1 0.8882 -6.6963 1.8781 42 1 -1.1086 -6.2166 -0.0603 43 1 0.4116 -6.5976 -0.9041 44 1 0.5886 -8.7161 0.3730 45 1 -0.9317 -8.3344 1.2165 46 1 -1.8035 -10.5319 0.2719 47 1 -1.8544 -10.7637 -1.4920 48 1 -0.2927 -10.7736 -0.6377 49 1 -2.8955 -7.8514 -0.1027 50 1 -6.0349 -7.2060 -3.2795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492113334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:14 Heat of formation + Delta-G solvation = -65.402972 kcal Electronic energy + Delta-G solvation = -28882.110189 eV Core-core repulsion = 24908.653464 eV Total energy + Delta-G solvation = -3973.456725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96610 -40.29937 -39.25497 -38.25014 -36.33216 -35.85869 -34.34399 -33.64148 -31.82566 -31.42695 -29.64056 -28.13343 -27.60838 -26.02238 -25.36723 -24.21684 -23.51102 -22.05351 -21.48724 -21.14404 -19.78143 -19.55570 -18.57526 -18.06473 -17.38972 -17.05692 -16.65991 -16.33088 -16.02819 -15.90083 -15.66855 -15.47199 -15.28535 -15.08735 -14.64178 -14.45205 -14.33538 -14.06010 -13.96436 -13.72440 -13.59524 -13.54452 -13.34541 -13.07691 -12.94268 -12.62118 -12.37281 -12.26762 -12.20087 -12.12723 -12.05610 -11.78383 -11.75827 -11.65171 -11.63378 -11.18976 -11.04937 -11.00076 -10.62001 -10.15117 -9.53972 -9.29358 -8.01911 -5.33178 -0.34822 0.23901 1.32733 1.39017 1.43776 1.86236 1.96893 2.08397 2.47427 2.80065 3.24063 3.30651 3.63099 3.68024 3.70242 3.78481 3.84710 3.95017 3.99868 4.06980 4.16299 4.23480 4.29732 4.41958 4.49481 4.51897 4.58711 4.65566 4.71362 4.75870 4.84770 4.87119 4.90198 4.93827 5.01575 5.06887 5.09201 5.13139 5.17355 5.27231 5.32331 5.37180 5.40774 5.46462 5.59991 5.80332 6.23074 6.23564 6.53164 6.75184 7.10265 7.25167 7.87771 8.04661 9.20298 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.002969 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.029177 B = 9429.538579 C =11272.841700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.135 4.135 4 C 0.073 3.927 5 O -0.298 6.298 6 C 0.346 3.654 7 N -0.562 5.562 8 C 0.161 3.839 9 C -0.204 4.204 10 C -0.002 4.002 11 C -0.236 4.236 12 C 0.551 3.449 13 O -0.568 6.568 14 N -0.708 5.708 15 C 0.130 3.870 16 C -0.117 4.117 17 C 0.167 3.833 18 H 0.041 0.959 19 C -0.154 4.154 20 N -0.751 5.751 21 C -0.220 4.220 22 H 0.057 0.943 23 C -0.067 4.067 24 N -0.987 5.987 25 Si 0.948 3.052 26 H -0.292 1.292 27 H -0.295 1.295 28 H -0.245 1.245 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.202 0.798 39 H 0.188 0.812 40 H 0.178 0.822 41 H 0.416 0.584 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.027 0.973 48 H 0.078 0.922 49 H 0.363 0.637 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.421 9.197 22.550 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.193 4.193 4 C -0.002 4.002 5 O -0.204 6.204 6 C 0.167 3.833 7 N -0.287 5.287 8 C 0.005 3.995 9 C -0.224 4.224 10 C -0.027 4.027 11 C -0.242 4.242 12 C 0.338 3.662 13 O -0.448 6.448 14 N -0.362 5.362 15 C 0.006 3.994 16 C -0.155 4.155 17 C 0.059 3.941 18 H 0.059 0.941 19 C -0.213 4.213 20 N -0.395 5.395 21 C -0.351 4.351 22 H 0.075 0.925 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.777 3.223 26 H -0.219 1.219 27 H -0.222 1.222 28 H -0.170 1.170 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.218 0.782 39 H 0.206 0.794 40 H 0.195 0.805 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.097 0.903 49 H 0.196 0.804 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.184 10.480 21.347 33.211 hybrid contribution -1.278 -0.363 0.272 1.357 sum 21.905 10.116 21.619 32.397 Atomic orbital electron populations 1.21779 0.95176 1.00904 1.02355 1.21180 0.96362 0.97310 0.96598 1.21720 1.01639 0.92662 1.03233 1.22907 1.00164 0.77879 0.99292 1.86510 1.72039 1.22686 1.39123 1.20149 0.88701 0.88153 0.86334 1.67562 1.16574 1.40821 1.03722 1.23487 0.91469 0.91650 0.92905 1.22412 1.02144 0.96319 1.01501 1.22080 0.90454 1.00898 0.89278 1.20059 1.10872 0.92942 1.00372 1.18348 0.79438 0.82392 0.85987 1.90845 1.55123 1.61430 1.37396 1.45692 1.56712 1.08911 1.24898 1.21167 0.94681 0.94658 0.88926 1.21967 1.02181 0.92260 0.99133 1.20443 0.84180 0.92513 0.96959 0.94086 1.22238 1.01595 0.96558 1.00954 1.42862 1.16825 1.72289 1.07535 1.19037 0.97144 1.30177 0.88724 0.92519 1.25440 0.98007 1.02720 0.99639 1.69876 1.13792 1.52968 1.27190 0.85499 0.77367 0.78296 0.81172 1.21879 1.22210 1.16955 0.91907 0.91651 0.95069 0.91695 0.91389 0.91023 0.91430 0.91375 0.91071 0.78158 0.79429 0.80480 0.74601 0.94388 0.93217 0.87031 0.89767 0.92630 0.95333 0.90272 0.80352 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.09 71.98 0.65 -2.98 16 2 C -0.10 -2.15 3.16 -10.80 -0.03 -2.18 16 3 C -0.14 -2.04 9.19 71.98 0.66 -1.38 16 4 C 0.07 1.74 4.69 71.98 0.34 2.07 16 5 O -0.30 -9.47 7.75 -66.40 -0.51 -9.99 16 6 C 0.35 9.40 7.51 85.13 0.64 10.04 16 7 N -0.56 -11.78 9.21 -307.99 -2.84 -14.61 16 8 C 0.16 1.89 11.17 84.71 0.95 2.83 16 9 C -0.20 -1.67 10.09 22.32 0.23 -1.44 16 10 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 11 C -0.24 -5.77 5.90 -19.91 -0.12 -5.89 16 12 C 0.55 17.39 7.77 86.69 0.67 18.06 16 13 O -0.57 -24.41 15.19 16.82 0.26 -24.15 16 14 N -0.71 -17.46 5.51 -466.29 -2.57 -20.03 16 15 C 0.13 4.05 5.56 86.38 0.48 4.53 16 16 C -0.12 -2.91 4.87 30.59 0.15 -2.76 16 17 C 0.17 5.87 2.89 44.99 0.13 6.00 16 18 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 19 C -0.15 -4.71 9.49 71.98 0.68 -4.02 16 20 N -0.75 -34.62 4.38 -322.95 -1.41 -36.03 16 21 C -0.22 -12.73 10.41 84.03 0.87 -11.85 16 22 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 24 N -0.99 -65.57 13.97 21.65 0.30 -65.26 16 25 Si 0.95 47.66 27.74 68.60 1.90 49.56 16 26 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 27 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 28 H -0.25 -10.84 6.52 99.48 0.65 -10.20 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.03 1.01 7.82 -2.39 -0.02 0.99 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.07 1.54 8.10 -2.38 -0.02 1.52 16 38 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.19 -0.08 8.06 -2.91 -0.02 -0.11 16 40 H 0.18 0.92 6.52 -2.91 -0.02 0.90 16 41 H 0.42 6.06 6.57 -92.71 -0.61 5.46 16 42 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.36 16.23 5.66 -92.71 -0.52 15.70 16 50 H 0.26 16.25 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -87.79 410.20 1.86 -85.93 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.26 Total: 27.00 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.99 Total: 7.59 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -6.52 Total: -135.94 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.26 Total: -34.14 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.90 Total: 49.56 kcal Total: -87.79 1.86 -85.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492113334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.526 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds