Wall clock time and date at job start Tue Mar 31 2020 19:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47103 * 2 1 4 4 C 1.53000 * 109.46555 * 119.99739 * 2 1 3 5 5 O 1.42901 * 109.47056 * 175.00096 * 4 2 1 6 6 C 1.35426 * 117.00516 * 179.97438 * 5 4 2 7 7 N 1.32243 * 119.79629 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.79876 * 180.02562 * 7 6 5 9 9 C 1.38355 * 121.18579 * 359.97438 * 8 7 6 10 10 C 1.38328 * 119.45836 * 0.27651 * 9 8 7 11 11 C 1.39993 * 118.35307 * 359.50599 * 10 9 8 12 12 C 1.47525 * 120.60412 * 180.26310 * 11 10 9 13 13 O 1.21588 * 120.00070 * 180.21286 * 12 11 10 14 14 N 1.34780 * 119.99533 * 0.20781 * 12 11 10 15 15 C 1.46496 * 119.99925 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47578 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47598 * 180.02562 * 16 15 14 18 18 H 1.09005 * 109.46643 * 305.00031 * 17 16 15 19 19 C 1.52999 * 109.47310 * 184.99957 * 17 16 15 20 20 N 1.46495 * 109.47224 * 64.99521 * 17 16 15 21 21 C 1.36939 * 120.00133 * 204.99836 * 20 17 16 22 22 H 1.08003 * 119.99834 * 0.02562 * 21 20 17 23 23 C 1.38808 * 120.00096 * 179.97438 * 21 20 17 24 24 N 1.31623 * 120.00067 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47216 * 90.00467 * 25 23 21 27 27 H 1.48507 * 109.46812 * 210.00309 * 25 23 21 28 28 H 1.48498 * 109.47257 * 329.99980 * 25 23 21 29 29 H 1.08998 * 109.47719 * 300.00598 * 1 2 3 30 30 H 1.09004 * 109.46811 * 60.00172 * 1 2 3 31 31 H 1.08996 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47319 * 239.99221 * 2 1 3 33 33 H 1.09002 * 109.47227 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47165 * 299.99574 * 3 2 1 35 35 H 1.09001 * 109.47103 * 59.99641 * 3 2 1 36 36 H 1.08996 * 109.47344 * 54.99963 * 4 2 1 37 37 H 1.09007 * 109.47376 * 294.99506 * 4 2 1 38 38 H 1.07998 * 119.40657 * 179.97438 * 8 7 6 39 39 H 1.08002 * 120.26680 * 179.97438 * 9 8 7 40 40 H 1.08001 * 120.82512 * 179.74838 * 10 9 8 41 41 H 0.96996 * 120.00298 * 0.02562 * 14 12 11 42 42 H 1.08998 * 109.47412 * 300.00524 * 15 14 12 43 43 H 1.09002 * 109.47283 * 60.00157 * 15 14 12 44 44 H 1.09006 * 109.46766 * 300.00237 * 16 15 14 45 45 H 1.09002 * 109.46943 * 59.99633 * 16 15 14 46 46 H 1.09003 * 109.47095 * 59.99397 * 19 17 16 47 47 H 1.08999 * 109.47064 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47089 * 300.00260 * 19 17 16 49 49 H 0.96999 * 120.00303 * 25.00669 * 20 17 16 50 50 H 0.97002 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4640 -0.8238 1.1922 6 6 4.0783 -1.4401 2.2299 7 7 3.3579 -1.9133 3.2329 8 6 3.9148 -2.5197 4.2631 9 6 5.2859 -2.6887 4.3396 10 6 6.0884 -2.2083 3.3205 11 6 5.4748 -1.5724 2.2347 12 6 6.2826 -1.0466 1.1178 13 8 5.7385 -0.4927 0.1821 14 7 7.6236 -1.1801 1.1348 15 6 8.4258 -0.6585 0.0255 16 6 9.9063 -0.9390 0.2906 17 6 10.7442 -0.3937 -0.8676 18 1 10.3834 -0.8141 -1.8064 19 6 12.2098 -0.7828 -0.6644 20 7 10.6277 1.0660 -0.9097 21 6 10.8322 1.7356 -2.0866 22 1 11.0790 1.1875 -2.9838 23 6 10.7214 3.1187 -2.1265 24 7 10.4201 3.7867 -1.0331 25 14 10.9997 4.0320 -3.7321 26 1 9.7117 4.1562 -4.4606 27 1 11.5383 5.3857 -3.4445 28 1 11.9704 3.2803 -4.5674 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6052 -1.7197 1.2953 37 1 1.7515 -0.1582 2.1371 38 1 3.2894 -2.8911 5.0615 39 1 5.7263 -3.1872 5.1905 40 1 7.1614 -2.3245 3.3595 41 1 8.0576 -1.6222 1.8812 42 1 8.1243 -1.1460 -0.9016 43 1 8.2694 0.4167 -0.0619 44 1 10.2081 -0.4517 1.2178 45 1 10.0624 -2.0142 0.3778 46 1 12.2964 -1.8689 -0.6330 47 1 12.8066 -0.3946 -1.4898 48 1 12.5705 -0.3624 0.2744 49 1 10.4058 1.5583 -0.1039 50 1 10.3430 4.7532 -1.0610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492113335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:18 Heat of formation + Delta-G solvation = -43.384643 kcal Electronic energy + Delta-G solvation = -28775.777507 eV Core-core repulsion = 24803.275568 eV Total energy + Delta-G solvation = -3972.501939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05704 -39.06169 -38.35479 -36.52287 -35.41616 -34.32802 -32.98953 -32.10288 -30.88535 -29.19120 -28.05243 -27.25565 -26.74372 -24.93207 -23.78601 -23.23061 -22.35429 -20.79675 -20.30423 -19.71880 -18.73176 -17.63637 -17.19374 -17.08254 -16.42223 -15.54507 -15.33267 -15.21070 -14.97154 -14.60053 -14.42206 -14.30307 -13.90089 -13.55518 -13.45304 -13.30819 -13.17168 -12.83566 -12.76215 -12.54003 -12.43586 -12.30311 -12.01232 -11.55188 -11.51539 -11.17646 -11.05528 -10.89438 -10.86352 -10.75423 -10.70725 -10.61017 -10.27312 -10.21042 -10.18332 -9.95831 -9.61054 -9.51792 -8.89444 -8.82944 -8.62712 -6.91407 -5.71337 -2.99936 0.48396 0.98468 2.82043 2.94461 3.27635 3.48250 3.53229 3.54457 3.70943 4.00808 4.42546 4.57706 4.61341 4.64299 4.69677 4.74453 4.85575 5.02642 5.18181 5.27810 5.33663 5.36281 5.40183 5.42634 5.52688 5.58246 5.60180 5.71081 5.72773 5.75697 5.79221 5.91161 5.94250 6.02222 6.09481 6.17714 6.20866 6.35293 6.37740 6.42550 6.51796 6.71460 6.75107 6.89161 7.08547 7.11338 7.49027 7.70649 7.75540 8.44079 8.47012 9.58402 10.15098 10.49607 11.51313 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.002805 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.786281 B = 9979.164948 C =12202.595168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.071 3.929 5 O -0.264 6.264 6 C 0.374 3.626 7 N -0.547 5.547 8 C 0.162 3.838 9 C -0.223 4.223 10 C -0.010 4.010 11 C -0.205 4.205 12 C 0.556 3.444 13 O -0.509 6.509 14 N -0.727 5.727 15 C 0.124 3.876 16 C -0.132 4.132 17 C 0.174 3.826 18 H 0.049 0.951 19 C -0.163 4.163 20 N -0.723 5.723 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.392 0.608 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.054 0.946 48 H 0.045 0.955 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 -15.964 12.735 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.005 4.005 5 O -0.167 6.167 6 C 0.194 3.806 7 N -0.272 5.272 8 C 0.005 3.995 9 C -0.243 4.243 10 C -0.036 4.036 11 C -0.212 4.212 12 C 0.341 3.659 13 O -0.384 6.384 14 N -0.379 5.379 15 C 0.002 3.998 16 C -0.171 4.171 17 C 0.064 3.936 18 H 0.067 0.933 19 C -0.223 4.223 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.226 0.774 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.403 -15.226 11.521 25.172 hybrid contribution 1.123 0.328 0.106 1.175 sum -15.280 -14.898 11.628 24.303 Atomic orbital electron populations 1.21764 0.93949 1.01933 1.02387 1.21149 0.95502 0.97348 0.97461 1.21832 1.02857 0.94545 1.01385 1.22835 0.77824 1.00746 0.99085 1.86541 1.22551 1.70006 1.37638 1.19860 0.88148 0.86908 0.85720 1.67507 1.40273 1.16112 1.03278 1.22638 0.93043 0.90399 0.93418 1.21903 0.94857 1.06202 1.01383 1.21658 1.00598 0.90672 0.90654 1.20163 0.91866 1.09639 0.99487 1.17738 0.82152 0.80092 0.85869 1.90868 1.71278 1.41417 1.34880 1.45986 1.06184 1.60796 1.24928 1.21454 0.89366 1.01034 0.87973 1.22064 0.93910 1.00333 1.00800 1.20148 0.92006 0.86404 0.95059 0.93284 1.22425 0.99985 0.98262 1.01665 1.42448 1.84229 0.99662 1.10186 1.19214 1.39719 0.89469 0.88426 0.91238 1.24719 1.02672 0.96466 0.97026 1.69657 1.55261 1.06790 1.26375 0.86227 0.77722 0.79281 0.83184 1.21706 1.21884 1.20842 0.92442 0.91742 0.92535 0.89966 0.91062 0.92511 0.93041 0.91739 0.91607 0.82008 0.83946 0.83803 0.77412 0.91749 0.89614 0.91625 0.91959 0.94603 0.92728 0.93541 0.78291 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.10 -1.04 3.16 -90.62 -0.29 -1.33 16 3 C -0.15 -1.78 9.09 37.16 0.34 -1.44 16 4 C 0.07 0.83 4.69 37.16 0.17 1.00 16 5 O -0.26 -4.02 7.75 -39.74 -0.31 -4.33 16 6 C 0.37 5.23 7.51 -16.61 -0.12 5.10 16 7 N -0.55 -6.38 9.21 -12.98 -0.12 -6.50 16 8 C 0.16 1.34 11.17 -17.49 -0.20 1.14 16 9 C -0.22 -1.61 10.09 -39.51 -0.40 -2.01 16 10 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 11 C -0.21 -2.72 5.90 -104.69 -0.62 -3.34 16 12 C 0.56 9.05 7.77 -12.47 -0.10 8.95 16 13 O -0.51 -10.53 15.19 -16.48 -0.25 -10.78 16 14 N -0.73 -10.15 5.51 -61.36 -0.34 -10.49 16 15 C 0.12 2.10 5.56 -4.04 -0.02 2.08 16 16 C -0.13 -2.01 4.87 -26.73 -0.13 -2.14 16 17 C 0.17 3.34 2.89 -67.93 -0.20 3.14 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 20 N -0.72 -17.78 4.57 -53.43 -0.24 -18.03 16 21 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 25 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.14 0.88 6.52 -52.49 -0.34 0.54 16 41 H 0.39 3.98 6.57 -40.82 -0.27 3.72 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 50 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 413.32 15.07 6.23 6.23 Total: -1.00 -34.83 413.32 -9.28 -44.11 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.46 Total: 9.54 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.48 Total: 0.20 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.02 Total: -62.78 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.56 Total: -15.11 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.83 -9.28 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492113335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.726 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds