Wall clock time and date at job start Tue Mar 31 2020 19:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47103 * 2 1 4 4 C 1.53000 * 109.46555 * 119.99739 * 2 1 3 5 5 O 1.42901 * 109.47056 * 175.00096 * 4 2 1 6 6 C 1.35426 * 117.00516 * 179.97438 * 5 4 2 7 7 N 1.32243 * 119.79629 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.79876 * 180.02562 * 7 6 5 9 9 C 1.38355 * 121.18579 * 359.97438 * 8 7 6 10 10 C 1.38328 * 119.45836 * 0.27651 * 9 8 7 11 11 C 1.39993 * 118.35307 * 359.50599 * 10 9 8 12 12 C 1.47525 * 120.60412 * 180.26310 * 11 10 9 13 13 O 1.21588 * 120.00070 * 180.21286 * 12 11 10 14 14 N 1.34780 * 119.99533 * 0.20781 * 12 11 10 15 15 C 1.46496 * 119.99925 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47578 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47598 * 180.02562 * 16 15 14 18 18 H 1.09005 * 109.46643 * 305.00031 * 17 16 15 19 19 C 1.52999 * 109.47310 * 184.99957 * 17 16 15 20 20 N 1.46495 * 109.47224 * 64.99521 * 17 16 15 21 21 C 1.36939 * 120.00133 * 204.99836 * 20 17 16 22 22 H 1.08003 * 119.99834 * 0.02562 * 21 20 17 23 23 C 1.38808 * 120.00096 * 179.97438 * 21 20 17 24 24 N 1.31623 * 120.00067 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47216 * 90.00467 * 25 23 21 27 27 H 1.48507 * 109.46812 * 210.00309 * 25 23 21 28 28 H 1.48498 * 109.47257 * 329.99980 * 25 23 21 29 29 H 1.08998 * 109.47719 * 300.00598 * 1 2 3 30 30 H 1.09004 * 109.46811 * 60.00172 * 1 2 3 31 31 H 1.08996 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47319 * 239.99221 * 2 1 3 33 33 H 1.09002 * 109.47227 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47165 * 299.99574 * 3 2 1 35 35 H 1.09001 * 109.47103 * 59.99641 * 3 2 1 36 36 H 1.08996 * 109.47344 * 54.99963 * 4 2 1 37 37 H 1.09007 * 109.47376 * 294.99506 * 4 2 1 38 38 H 1.07998 * 119.40657 * 179.97438 * 8 7 6 39 39 H 1.08002 * 120.26680 * 179.97438 * 9 8 7 40 40 H 1.08001 * 120.82512 * 179.74838 * 10 9 8 41 41 H 0.96996 * 120.00298 * 0.02562 * 14 12 11 42 42 H 1.08998 * 109.47412 * 300.00524 * 15 14 12 43 43 H 1.09002 * 109.47283 * 60.00157 * 15 14 12 44 44 H 1.09006 * 109.46766 * 300.00237 * 16 15 14 45 45 H 1.09002 * 109.46943 * 59.99633 * 16 15 14 46 46 H 1.09003 * 109.47095 * 59.99397 * 19 17 16 47 47 H 1.08999 * 109.47064 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47089 * 300.00260 * 19 17 16 49 49 H 0.96999 * 120.00303 * 25.00669 * 20 17 16 50 50 H 0.97002 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4640 -0.8238 1.1922 6 6 4.0783 -1.4401 2.2299 7 7 3.3579 -1.9133 3.2329 8 6 3.9148 -2.5197 4.2631 9 6 5.2859 -2.6887 4.3396 10 6 6.0884 -2.2083 3.3205 11 6 5.4748 -1.5724 2.2347 12 6 6.2826 -1.0466 1.1178 13 8 5.7385 -0.4927 0.1821 14 7 7.6236 -1.1801 1.1348 15 6 8.4258 -0.6585 0.0255 16 6 9.9063 -0.9390 0.2906 17 6 10.7442 -0.3937 -0.8676 18 1 10.3834 -0.8141 -1.8064 19 6 12.2098 -0.7828 -0.6644 20 7 10.6277 1.0660 -0.9097 21 6 10.8322 1.7356 -2.0866 22 1 11.0790 1.1875 -2.9838 23 6 10.7214 3.1187 -2.1265 24 7 10.4201 3.7867 -1.0331 25 14 10.9997 4.0320 -3.7321 26 1 9.7117 4.1562 -4.4606 27 1 11.5383 5.3857 -3.4445 28 1 11.9704 3.2803 -4.5674 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6052 -1.7197 1.2953 37 1 1.7515 -0.1582 2.1371 38 1 3.2894 -2.8911 5.0615 39 1 5.7263 -3.1872 5.1905 40 1 7.1614 -2.3245 3.3595 41 1 8.0576 -1.6222 1.8812 42 1 8.1243 -1.1460 -0.9016 43 1 8.2694 0.4167 -0.0619 44 1 10.2081 -0.4517 1.2178 45 1 10.0624 -2.0142 0.3778 46 1 12.2964 -1.8689 -0.6330 47 1 12.8066 -0.3946 -1.4898 48 1 12.5705 -0.3624 0.2744 49 1 10.4058 1.5583 -0.1039 50 1 10.3430 4.7532 -1.0610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492113335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:17 Heat of formation + Delta-G solvation = -67.887604 kcal Electronic energy + Delta-G solvation = -28776.840035 eV Core-core repulsion = 24803.275568 eV Total energy + Delta-G solvation = -3973.564467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95392 -40.27525 -39.24322 -38.10368 -36.31582 -35.80998 -34.30575 -33.58471 -31.73236 -30.91906 -29.52406 -28.12271 -27.59668 -26.08212 -25.56213 -24.24002 -23.52438 -22.02722 -21.36678 -21.07092 -19.63936 -19.28713 -18.56052 -18.05257 -17.37427 -16.96753 -16.60686 -16.36543 -16.00083 -15.81206 -15.56729 -15.48049 -15.29602 -15.17547 -14.59399 -14.32575 -14.27856 -13.97558 -13.94923 -13.58071 -13.54711 -13.33612 -13.22985 -13.06650 -12.83749 -12.61908 -12.36345 -12.28320 -12.23546 -12.11742 -12.10002 -11.74732 -11.64370 -11.63584 -11.59055 -11.17449 -11.03997 -10.94614 -10.60766 -10.12570 -9.52765 -8.97062 -7.92433 -5.18923 -0.33759 0.24545 1.44793 1.47477 1.54582 1.87719 1.98009 2.10996 2.57058 2.81112 3.25052 3.41903 3.68999 3.71562 3.79414 3.85586 3.92951 3.96675 4.03132 4.08331 4.20818 4.26334 4.38067 4.43179 4.50530 4.52766 4.59812 4.68122 4.72425 4.77862 4.87708 4.89530 4.91930 4.94959 5.03812 5.08113 5.12319 5.13903 5.22913 5.28410 5.33617 5.40975 5.43116 5.47757 5.54464 5.63254 6.24738 6.30730 6.54649 6.75915 7.26725 7.36612 8.15131 8.35962 9.31190 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.002805 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.786281 B = 9979.164948 C =12202.595168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.072 3.928 5 O -0.298 6.298 6 C 0.346 3.654 7 N -0.561 5.561 8 C 0.162 3.838 9 C -0.204 4.204 10 C -0.003 4.003 11 C -0.236 4.236 12 C 0.551 3.449 13 O -0.569 6.569 14 N -0.708 5.708 15 C 0.136 3.864 16 C -0.114 4.114 17 C 0.163 3.837 18 H 0.041 0.959 19 C -0.152 4.152 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.966 3.034 26 H -0.294 1.294 27 H -0.296 1.296 28 H -0.267 1.267 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.203 0.797 39 H 0.189 0.811 40 H 0.176 0.824 41 H 0.414 0.586 42 H 0.049 0.951 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.031 0.969 48 H 0.046 0.954 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -18.996 15.142 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.003 4.003 5 O -0.203 6.203 6 C 0.167 3.833 7 N -0.286 5.286 8 C 0.005 3.995 9 C -0.223 4.223 10 C -0.028 4.028 11 C -0.243 4.243 12 C 0.338 3.662 13 O -0.449 6.449 14 N -0.362 5.362 15 C 0.012 3.988 16 C -0.153 4.153 17 C 0.055 3.945 18 H 0.059 0.941 19 C -0.212 4.212 20 N -0.376 5.376 21 C -0.364 4.364 22 H 0.091 0.909 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.795 3.205 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.220 0.780 39 H 0.206 0.794 40 H 0.193 0.807 41 H 0.252 0.748 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.146 -18.345 13.956 28.142 hybrid contribution 1.034 1.108 -0.514 1.600 sum -15.112 -17.237 13.442 26.574 Atomic orbital electron populations 1.21715 0.91241 1.03006 1.03242 1.21182 0.97622 0.96047 0.96584 1.21780 1.00120 0.95956 1.02364 1.22917 0.76879 1.01174 0.99322 1.86514 1.23957 1.70796 1.39076 1.20130 0.88719 0.88069 0.86362 1.67563 1.40520 1.16825 1.03685 1.23494 0.94539 0.88532 0.92904 1.22410 0.94150 1.04247 1.01538 1.22073 1.02379 0.89033 0.89330 1.20063 0.91491 1.12474 1.00223 1.18357 0.82686 0.79067 0.86066 1.90834 1.72434 1.44175 1.37419 1.45702 1.05475 1.60198 1.24797 1.21091 0.91231 0.97804 0.88684 1.21920 0.91206 1.02909 0.99239 1.20468 0.94168 0.83380 0.96527 0.94105 1.22251 0.97395 1.00847 1.00702 1.42654 1.84148 1.02040 1.08750 1.19595 1.37351 0.89832 0.89594 0.90855 1.25485 1.04014 0.97580 1.00007 1.69811 1.57581 1.06427 1.28324 0.85245 0.77498 0.77894 0.79824 1.22120 1.22250 1.19214 0.91451 0.90978 0.91355 0.91660 0.95184 0.91577 0.91939 0.91006 0.91414 0.78034 0.79395 0.80680 0.74761 0.93268 0.94799 0.90730 0.87375 0.90480 0.94940 0.93498 0.79666 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.19 71.98 0.66 -1.44 16 2 C -0.10 -2.22 3.16 -10.79 -0.03 -2.26 16 3 C -0.14 -3.78 9.09 71.98 0.65 -3.13 16 4 C 0.07 1.80 4.69 71.98 0.34 2.14 16 5 O -0.30 -9.89 7.75 -66.40 -0.51 -10.40 16 6 C 0.35 9.96 7.51 85.13 0.64 10.60 16 7 N -0.56 -12.48 9.21 -307.99 -2.84 -15.31 16 8 C 0.16 2.10 11.17 84.71 0.95 3.04 16 9 C -0.20 -1.99 10.09 22.32 0.23 -1.76 16 10 C 0.00 -0.04 9.64 22.72 0.22 0.18 16 11 C -0.24 -6.27 5.90 -19.91 -0.12 -6.39 16 12 C 0.55 18.79 7.77 86.69 0.67 19.46 16 13 O -0.57 -25.77 15.19 16.82 0.26 -25.51 16 14 N -0.71 -19.70 5.51 -466.29 -2.57 -22.27 16 15 C 0.14 4.72 5.56 86.38 0.48 5.20 16 16 C -0.11 -3.27 4.87 30.59 0.15 -3.12 16 17 C 0.16 6.11 2.89 44.99 0.13 6.24 16 18 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 19 C -0.15 -4.95 9.49 71.98 0.68 -4.27 16 20 N -0.74 -36.94 4.57 -322.95 -1.48 -38.42 16 21 C -0.23 -13.12 9.93 84.03 0.83 -12.28 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 25 Si 0.97 48.10 29.55 68.60 2.03 50.13 16 26 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.03 1.01 7.82 -2.39 -0.02 0.99 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.07 1.59 8.10 -2.38 -0.02 1.57 16 38 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.18 1.35 6.52 -2.91 -0.02 1.33 16 41 H 0.41 7.43 6.57 -92.71 -0.61 6.82 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.03 1.53 7.75 -2.39 -0.02 1.52 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 49 H 0.37 20.20 7.80 -92.71 -0.72 19.48 16 50 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -84.03 413.32 1.72 -82.31 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.40 Total: 32.62 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.95 Total: 8.01 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -6.60 Total: -137.15 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.26 Total: -35.92 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -84.03 1.72 -82.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492113335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.422 kcal (2) G-P(sol) polarization free energy of solvation -84.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds