Wall clock time and date at job start Tue Mar 31 2020 18:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.50697 * 109.47056 * 120.00059 * 2 1 3 5 5 C 1.35321 * 126.66441 * 120.00250 * 4 2 1 6 6 C 1.42274 * 103.92040 * 179.97438 * 5 4 2 7 7 C 1.48331 * 126.93787 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99656 * 353.03597 * 7 6 5 9 9 N 1.34773 * 119.99803 * 173.02898 * 7 6 5 10 10 C 1.46923 * 120.63460 * 353.22896 * 9 7 6 11 11 C 1.53193 * 108.77435 * 233.58305 * 10 9 7 12 12 C 1.53046 * 109.30933 * 305.36023 * 11 10 9 13 13 C 1.53007 * 109.45436 * 181.38452 * 12 11 10 14 14 H 1.08997 * 109.47439 * 300.00164 * 13 12 11 15 15 C 1.53001 * 109.47164 * 60.00582 * 13 12 11 16 16 N 1.46502 * 109.46746 * 180.02562 * 13 12 11 17 17 C 1.36937 * 119.99840 * 155.00011 * 16 13 12 18 18 H 1.08000 * 120.00080 * 0.02562 * 17 16 13 19 19 C 1.38807 * 120.00257 * 180.02562 * 17 16 13 20 20 N 1.31623 * 120.00512 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47017 * 90.00016 * 21 19 17 23 23 H 1.48499 * 109.47521 * 210.00085 * 21 19 17 24 24 H 1.48511 * 109.47174 * 330.00178 * 21 19 17 25 25 C 1.53042 * 109.53331 * 61.37149 * 12 11 10 26 26 C 1.46927 * 120.62562 * 173.19759 * 9 7 6 27 27 N 1.30985 * 106.12034 * 0.25821 * 6 5 4 28 28 O 1.20901 * 111.44322 * 359.53717 * 27 6 5 29 29 H 1.09003 * 109.47566 * 59.99785 * 1 2 3 30 30 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46966 * 299.99756 * 1 2 3 32 32 H 1.08998 * 109.46700 * 240.00076 * 2 1 3 33 33 H 1.08997 * 109.47391 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47070 * 300.00519 * 3 2 1 35 35 H 1.09007 * 109.47312 * 59.99821 * 3 2 1 36 36 H 1.07991 * 128.03586 * 359.97438 * 5 4 2 37 37 H 1.09007 * 109.58557 * 113.79568 * 10 9 7 38 38 H 1.09001 * 109.58562 * 353.36682 * 10 9 7 39 39 H 1.09005 * 109.49672 * 185.41513 * 11 10 9 40 40 H 1.08999 * 109.49956 * 65.31630 * 11 10 9 41 41 H 1.08998 * 109.46321 * 301.34590 * 12 11 10 42 42 H 1.08997 * 109.47416 * 179.97438 * 15 13 12 43 43 H 1.09008 * 109.46813 * 300.00055 * 15 13 12 44 44 H 1.09000 * 109.46878 * 59.99171 * 15 13 12 45 45 H 0.97000 * 120.00125 * 335.00635 * 16 13 12 46 46 H 0.96991 * 119.99947 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.50106 * 58.58778 * 25 12 11 48 48 H 1.09003 * 109.49075 * 178.64494 * 25 12 11 49 49 H 1.08995 * 109.58928 * 6.63455 * 26 9 7 50 50 H 1.09000 * 109.70884 * 246.27560 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8134 -1.8149 1.2635 6 6 2.9919 -2.0665 2.6524 7 6 3.7715 -3.1694 3.2656 8 8 4.2353 -4.0476 2.5657 9 7 3.9655 -3.1972 4.5990 10 6 3.5408 -2.0706 5.4409 11 6 4.7349 -1.6044 6.2798 12 6 5.3006 -2.7936 7.0596 13 6 6.4719 -2.3246 7.9251 14 1 7.2499 -1.9050 7.2873 15 6 5.9854 -1.2562 8.9063 16 7 7.0141 -3.4629 8.6713 17 6 8.3162 -3.4462 9.0948 18 1 8.9433 -2.5938 8.8792 19 6 8.8301 -4.5249 9.8013 20 7 10.0815 -4.5087 10.2089 21 14 7.7456 -5.9996 10.1737 22 1 7.8574 -6.9874 9.0705 23 1 8.1833 -6.6272 11.4464 24 1 6.3338 -5.5565 10.3002 25 6 5.7872 -3.8634 6.0794 26 6 4.6050 -4.3552 5.2383 27 7 2.3238 -1.1310 3.2802 28 8 1.7929 -0.3707 2.5045 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.2092 -2.3752 0.4294 37 1 2.7339 -2.3909 6.1002 38 1 3.1962 -1.2519 4.8092 39 1 4.4100 -0.8329 6.9780 40 1 5.5052 -1.2003 5.6230 41 1 4.5226 -3.2126 7.6978 42 1 6.8197 -0.9224 9.5231 43 1 5.5822 -0.4094 8.3507 44 1 5.2074 -1.6759 9.5440 45 1 6.4507 -4.2283 8.8652 46 1 10.4406 -5.2626 10.7023 47 1 6.5477 -3.4381 5.4246 48 1 6.2119 -4.6996 6.6350 49 1 4.9626 -5.0439 4.4729 50 1 3.8862 -4.8640 5.8806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493837902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:45 Heat of formation + Delta-G solvation = 36.136420 kcal Electronic energy + Delta-G solvation = -29470.624083 eV Core-core repulsion = 25501.570437 eV Total energy + Delta-G solvation = -3969.053647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.42251 -40.26139 -38.07329 -36.60971 -35.62093 -34.35419 -32.88058 -31.56097 -30.99495 -30.72714 -28.74027 -27.73676 -26.28283 -24.49659 -23.85270 -23.47972 -22.78142 -22.12995 -20.67981 -19.86701 -18.98494 -18.11430 -17.64065 -17.55185 -16.99542 -16.09319 -15.59017 -15.38226 -14.86645 -14.75040 -14.33635 -14.09901 -14.00417 -13.81003 -13.78255 -13.57082 -13.45708 -12.90409 -12.75529 -12.67930 -12.40859 -12.35961 -12.14474 -11.90079 -11.84945 -11.65125 -11.42159 -11.31335 -11.09761 -10.93927 -10.81991 -10.74229 -10.44731 -10.30931 -10.24088 -10.04865 -9.86128 -9.74777 -9.54901 -8.92280 -8.72869 -7.24362 -5.75056 -3.09973 0.79936 1.34887 2.48478 2.71205 2.94321 3.37854 3.40177 3.46018 3.62608 3.91030 4.30088 4.46942 4.50604 4.60200 4.64244 4.79136 4.91980 4.94861 4.99671 5.01854 5.07887 5.18385 5.25748 5.28829 5.30488 5.39411 5.46640 5.52059 5.58060 5.59718 5.65477 5.66277 5.69929 5.82176 5.89129 5.97058 6.03268 6.06461 6.22014 6.28098 6.38602 6.43374 6.56062 6.65126 6.86066 7.04555 7.16452 7.65239 7.91064 8.01779 8.44242 9.22995 9.95595 10.15825 11.43525 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.002339 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.323211 B =11966.748915 C =12476.097018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.023 4.023 5 C -0.182 4.182 6 C -0.016 4.016 7 C 0.594 3.406 8 O -0.527 6.527 9 N -0.591 5.591 10 C 0.088 3.912 11 C -0.127 4.127 12 C -0.095 4.095 13 C 0.183 3.817 14 H 0.054 0.946 15 C -0.166 4.166 16 N -0.747 5.747 17 C -0.238 4.238 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.278 1.278 25 C -0.123 4.123 26 C 0.110 3.890 27 N -0.328 5.328 28 O 0.116 5.884 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.180 0.820 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.089 11.079 -21.470 32.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 C -0.209 4.209 4 C -0.086 4.086 5 C -0.205 4.205 6 C -0.174 4.174 7 C 0.380 3.620 8 O -0.403 6.403 9 N -0.323 5.323 10 C -0.035 4.035 11 C -0.165 4.165 12 C -0.114 4.114 13 C 0.074 3.926 14 H 0.072 0.928 15 C -0.226 4.226 16 N -0.390 5.390 17 C -0.368 4.368 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.204 1.204 25 C -0.161 4.161 26 C -0.012 4.012 27 N -0.032 5.032 28 O 0.045 5.955 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.197 0.803 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.192 0.808 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.111 0.889 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.752 10.880 -20.467 31.787 hybrid contribution -0.350 -1.489 -0.082 1.531 sum -22.102 9.391 -20.549 31.606 Atomic orbital electron populations 1.21907 0.92954 1.02852 1.03181 1.19841 0.96858 0.96258 0.90210 1.21909 1.01827 0.94017 1.03191 1.24486 0.99977 0.96988 0.87185 1.22438 1.02760 0.98714 0.96555 1.23516 1.02622 0.98406 0.92860 1.16979 0.79489 0.83526 0.82036 1.90789 1.50080 1.38173 1.61220 1.48015 1.58613 1.20114 1.05581 1.22427 0.97198 0.89266 0.94590 1.22006 0.97279 0.98530 0.98689 1.21455 0.98567 0.95097 0.96280 1.20184 0.92698 0.88420 0.91299 0.92830 1.22464 1.01087 0.98764 1.00316 1.42784 1.11268 1.18129 1.66813 1.19058 0.86141 1.03354 1.28265 0.89319 1.24665 0.95932 0.98105 1.00593 1.69698 1.13312 1.31874 1.43446 0.86580 0.80268 0.84061 0.77795 1.21080 1.21861 1.20377 1.21903 0.96505 1.00153 0.97547 1.21832 0.95247 0.87120 0.96974 1.74099 1.10052 1.02917 1.16096 1.84772 1.54495 1.42682 1.13599 0.91126 0.92006 0.91630 0.87665 0.91909 0.91128 0.91606 0.80273 0.91236 0.87041 0.90016 0.91565 0.91415 0.92510 0.93996 0.93701 0.80761 0.93135 0.91384 0.89446 0.88910 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.18 37.16 0.34 -0.21 16 2 C -0.01 -0.05 3.34 -91.77 -0.31 -0.36 16 3 C -0.15 -0.58 9.18 37.16 0.34 -0.24 16 4 C -0.02 -0.18 5.98 -35.35 -0.21 -0.39 16 5 C -0.18 -1.74 10.92 -39.07 -0.43 -2.17 16 6 C -0.02 -0.19 6.87 -82.53 -0.57 -0.76 16 7 C 0.59 8.68 7.71 -12.11 -0.09 8.58 16 8 O -0.53 -9.01 16.38 5.37 0.09 -8.92 16 9 N -0.59 -8.09 2.97 -173.70 -0.52 -8.60 16 10 C 0.09 1.06 6.12 -3.71 -0.02 1.03 16 11 C -0.13 -1.61 5.04 -26.61 -0.13 -1.74 16 12 C -0.09 -1.43 1.79 -90.57 -0.16 -1.59 16 13 C 0.18 3.41 2.47 -67.93 -0.17 3.25 16 14 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 15 C -0.17 -2.85 9.14 37.16 0.34 -2.51 16 16 N -0.75 -17.21 4.21 -53.42 -0.22 -17.43 16 17 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 20 N -0.94 -29.48 13.97 55.49 0.78 -28.70 16 21 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 25 C -0.12 -1.91 5.22 -26.61 -0.14 -2.05 16 26 C 0.11 1.53 6.44 -3.71 -0.02 1.50 16 27 N -0.33 -3.71 8.67 33.29 0.29 -3.42 16 28 O 0.12 1.09 11.18 17.25 0.19 1.29 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.11 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 0.28 8.14 -51.92 -0.42 -0.15 16 36 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.11 1.32 4.22 -56.02 -0.24 1.08 16 39 H 0.08 0.94 6.36 -51.93 -0.33 0.61 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.59 6.40 -51.92 -0.33 0.26 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.36 8.17 5.44 -40.82 -0.22 7.95 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.50 7.40 -51.93 -0.38 1.12 16 49 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 50 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -33.24 394.44 -7.87 -41.11 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.22 Total: 5.80 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.49 Total: -4.47 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.32 Total: -58.16 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.28 Total: -7.63 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.24 -7.87 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493837902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.245 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds