Wall clock time and date at job start Tue Mar 31 2020 18:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.50697 * 109.47056 * 120.00059 * 2 1 3 5 5 C 1.35321 * 126.66441 * 120.00250 * 4 2 1 6 6 C 1.42274 * 103.92040 * 179.97438 * 5 4 2 7 7 C 1.48331 * 126.93787 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99656 * 353.03597 * 7 6 5 9 9 N 1.34773 * 119.99803 * 173.02898 * 7 6 5 10 10 C 1.46923 * 120.63460 * 353.22896 * 9 7 6 11 11 C 1.53193 * 108.77435 * 233.58305 * 10 9 7 12 12 C 1.53046 * 109.30933 * 305.36023 * 11 10 9 13 13 C 1.53007 * 109.45436 * 181.38452 * 12 11 10 14 14 H 1.08997 * 109.47439 * 300.00164 * 13 12 11 15 15 C 1.53001 * 109.47164 * 60.00582 * 13 12 11 16 16 N 1.46502 * 109.46746 * 180.02562 * 13 12 11 17 17 C 1.36937 * 119.99840 * 155.00011 * 16 13 12 18 18 H 1.08000 * 120.00080 * 0.02562 * 17 16 13 19 19 C 1.38807 * 120.00257 * 180.02562 * 17 16 13 20 20 N 1.31623 * 120.00512 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47017 * 90.00016 * 21 19 17 23 23 H 1.48499 * 109.47521 * 210.00085 * 21 19 17 24 24 H 1.48511 * 109.47174 * 330.00178 * 21 19 17 25 25 C 1.53042 * 109.53331 * 61.37149 * 12 11 10 26 26 C 1.46927 * 120.62562 * 173.19759 * 9 7 6 27 27 N 1.30985 * 106.12034 * 0.25821 * 6 5 4 28 28 O 1.20901 * 111.44322 * 359.53717 * 27 6 5 29 29 H 1.09003 * 109.47566 * 59.99785 * 1 2 3 30 30 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46966 * 299.99756 * 1 2 3 32 32 H 1.08998 * 109.46700 * 240.00076 * 2 1 3 33 33 H 1.08997 * 109.47391 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47070 * 300.00519 * 3 2 1 35 35 H 1.09007 * 109.47312 * 59.99821 * 3 2 1 36 36 H 1.07991 * 128.03586 * 359.97438 * 5 4 2 37 37 H 1.09007 * 109.58557 * 113.79568 * 10 9 7 38 38 H 1.09001 * 109.58562 * 353.36682 * 10 9 7 39 39 H 1.09005 * 109.49672 * 185.41513 * 11 10 9 40 40 H 1.08999 * 109.49956 * 65.31630 * 11 10 9 41 41 H 1.08998 * 109.46321 * 301.34590 * 12 11 10 42 42 H 1.08997 * 109.47416 * 179.97438 * 15 13 12 43 43 H 1.09008 * 109.46813 * 300.00055 * 15 13 12 44 44 H 1.09000 * 109.46878 * 59.99171 * 15 13 12 45 45 H 0.97000 * 120.00125 * 335.00635 * 16 13 12 46 46 H 0.96991 * 119.99947 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.50106 * 58.58778 * 25 12 11 48 48 H 1.09003 * 109.49075 * 178.64494 * 25 12 11 49 49 H 1.08995 * 109.58928 * 6.63455 * 26 9 7 50 50 H 1.09000 * 109.70884 * 246.27560 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8134 -1.8149 1.2635 6 6 2.9919 -2.0665 2.6524 7 6 3.7715 -3.1694 3.2656 8 8 4.2353 -4.0476 2.5657 9 7 3.9655 -3.1972 4.5990 10 6 3.5408 -2.0706 5.4409 11 6 4.7349 -1.6044 6.2798 12 6 5.3006 -2.7936 7.0596 13 6 6.4719 -2.3246 7.9251 14 1 7.2499 -1.9050 7.2873 15 6 5.9854 -1.2562 8.9063 16 7 7.0141 -3.4629 8.6713 17 6 8.3162 -3.4462 9.0948 18 1 8.9433 -2.5938 8.8792 19 6 8.8301 -4.5249 9.8013 20 7 10.0815 -4.5087 10.2089 21 14 7.7456 -5.9996 10.1737 22 1 7.8574 -6.9874 9.0705 23 1 8.1833 -6.6272 11.4464 24 1 6.3338 -5.5565 10.3002 25 6 5.7872 -3.8634 6.0794 26 6 4.6050 -4.3552 5.2383 27 7 2.3238 -1.1310 3.2802 28 8 1.7929 -0.3707 2.5045 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.2092 -2.3752 0.4294 37 1 2.7339 -2.3909 6.1002 38 1 3.1962 -1.2519 4.8092 39 1 4.4100 -0.8329 6.9780 40 1 5.5052 -1.2003 5.6230 41 1 4.5226 -3.2126 7.6978 42 1 6.8197 -0.9224 9.5231 43 1 5.5822 -0.4094 8.3507 44 1 5.2074 -1.6759 9.5440 45 1 6.4507 -4.2283 8.8652 46 1 10.4406 -5.2626 10.7023 47 1 6.5477 -3.4381 5.4246 48 1 6.2119 -4.6996 6.6350 49 1 4.9626 -5.0439 4.4729 50 1 3.8862 -4.8640 5.8806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493837902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:44 Heat of formation + Delta-G solvation = 16.371602 kcal Electronic energy + Delta-G solvation = -29471.481150 eV Core-core repulsion = 25501.570437 eV Total energy + Delta-G solvation = -3969.910714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.21317 -41.38505 -39.36693 -37.18318 -36.94999 -35.26794 -34.60335 -32.82500 -32.46194 -31.57437 -30.35294 -27.99777 -27.42024 -25.82940 -25.13989 -24.34198 -23.88411 -23.10650 -21.89268 -21.31527 -20.07593 -19.45017 -18.90467 -18.41068 -17.91685 -17.15909 -16.79468 -16.39786 -16.10376 -16.05266 -15.46207 -15.21188 -15.05906 -14.92729 -14.74701 -14.53360 -14.45040 -14.28173 -14.10209 -13.87584 -13.61342 -13.24138 -13.02985 -12.99390 -12.90762 -12.65423 -12.39924 -12.37958 -12.20954 -12.14891 -12.05197 -11.85157 -11.78957 -11.62567 -11.61608 -11.51888 -11.34447 -11.13088 -10.95553 -10.46738 -9.85975 -9.28887 -8.01054 -5.33141 -0.05044 0.61269 1.36553 1.40342 1.47353 1.58152 1.91470 1.95846 2.48786 2.71648 3.26701 3.30589 3.52311 3.68420 3.71949 3.81586 3.90956 3.99961 4.00504 4.10455 4.16551 4.26449 4.31785 4.42131 4.48870 4.51516 4.55871 4.69568 4.75209 4.83023 4.83537 4.85482 4.90041 4.90865 5.00242 5.00373 5.01951 5.06813 5.14049 5.17345 5.23721 5.40390 5.40553 5.42361 5.47984 5.61002 5.79185 6.09432 6.23336 6.70882 6.99634 7.10091 7.87045 8.06433 9.20895 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.002339 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.323211 B =11966.748915 C =12476.097018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.152 4.152 4 C -0.003 4.003 5 C -0.195 4.195 6 C -0.039 4.039 7 C 0.590 3.410 8 O -0.562 6.562 9 N -0.592 5.592 10 C 0.091 3.909 11 C -0.119 4.119 12 C -0.083 4.083 13 C 0.177 3.823 14 H 0.033 0.967 15 C -0.158 4.158 16 N -0.748 5.748 17 C -0.220 4.220 18 H 0.052 0.948 19 C -0.069 4.069 20 N -0.987 5.987 21 Si 0.953 3.047 22 H -0.279 1.279 23 H -0.299 1.299 24 H -0.249 1.249 25 C -0.118 4.118 26 C 0.115 3.885 27 N -0.336 5.336 28 O 0.123 5.877 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.190 0.810 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.027 0.973 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.365 0.635 46 H 0.256 0.744 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.775 12.001 -22.704 36.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.209 4.209 4 C -0.066 4.066 5 C -0.218 4.218 6 C -0.196 4.196 7 C 0.377 3.623 8 O -0.440 6.440 9 N -0.324 5.324 10 C -0.031 4.031 11 C -0.157 4.157 12 C -0.103 4.103 13 C 0.069 3.931 14 H 0.051 0.949 15 C -0.217 4.217 16 N -0.391 5.391 17 C -0.352 4.352 18 H 0.070 0.930 19 C -0.260 4.260 20 N -0.638 5.638 21 Si 0.781 3.219 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.173 1.173 25 C -0.157 4.157 26 C -0.006 4.006 27 N -0.038 5.038 28 O 0.049 5.951 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.207 0.793 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.198 0.802 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.494 11.842 -21.706 35.515 hybrid contribution 0.805 -1.610 0.190 1.810 sum -24.688 10.233 -21.516 34.310 Atomic orbital electron populations 1.21918 0.92120 1.02811 1.03946 1.20087 0.97436 0.96467 0.89016 1.21923 1.01423 0.93587 1.03960 1.25059 0.98297 0.96063 0.87219 1.22648 1.03618 0.99680 0.95859 1.23366 1.03644 0.98578 0.94056 1.17310 0.79236 0.83707 0.82083 1.90759 1.51616 1.39643 1.61976 1.48111 1.58199 1.20387 1.05670 1.22520 0.97085 0.88970 0.94500 1.21957 0.97248 0.97794 0.98707 1.21341 0.97185 0.95901 0.95844 1.20408 0.93527 0.87630 0.91524 0.94901 1.22332 1.00276 0.99299 0.99832 1.42761 1.09579 1.19751 1.67040 1.18979 0.87744 1.01689 1.26743 0.93001 1.25497 0.97438 1.01654 1.01410 1.69890 1.15685 1.32968 1.45288 0.85429 0.79643 0.79815 0.77021 1.20565 1.22654 1.17315 1.21804 0.96791 0.99670 0.97411 1.21726 0.95031 0.87232 0.96635 1.74040 1.10185 1.02888 1.16696 1.84742 1.53862 1.42074 1.14382 0.89219 0.92451 0.92083 0.85799 0.92569 0.89213 0.92062 0.79283 0.89541 0.86439 0.87896 0.92510 0.89958 0.95376 0.90432 0.92742 0.80173 0.93552 0.93314 0.91166 0.90046 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.18 71.98 0.66 -0.01 16 2 C -0.01 -0.06 3.34 -11.54 -0.04 -0.10 16 3 C -0.15 -0.75 9.18 71.98 0.66 -0.09 16 4 C 0.00 -0.04 5.98 25.01 0.15 0.11 16 5 C -0.20 -3.49 10.92 22.60 0.25 -3.25 16 6 C -0.04 -0.93 6.87 42.96 0.30 -0.63 16 7 C 0.59 16.98 7.71 86.93 0.67 17.65 16 8 O -0.56 -19.42 16.38 -3.70 -0.06 -19.48 16 9 N -0.59 -15.48 2.97 -821.77 -2.44 -17.93 16 10 C 0.09 1.97 6.12 86.36 0.53 2.49 16 11 C -0.12 -2.72 5.04 30.67 0.15 -2.56 16 12 C -0.08 -2.36 1.79 -10.76 -0.02 -2.38 16 13 C 0.18 6.45 2.47 44.99 0.11 6.57 16 14 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 15 C -0.16 -5.12 9.14 71.98 0.66 -4.47 16 16 N -0.75 -34.15 4.21 -322.93 -1.36 -35.51 16 17 C -0.22 -12.59 10.41 84.03 0.87 -11.72 16 18 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.99 -64.33 13.97 21.65 0.30 -64.03 16 21 Si 0.95 45.90 27.74 68.60 1.90 47.80 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 24 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 25 C -0.12 -3.62 5.22 30.67 0.16 -3.46 16 26 C 0.12 3.10 6.44 86.36 0.56 3.66 16 27 N -0.34 -7.03 8.67 -49.51 -0.43 -7.46 16 28 O 0.12 2.08 11.18 71.91 0.80 2.88 16 29 H 0.09 0.09 8.14 -2.39 -0.02 0.08 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.12 0.34 8.12 -2.39 -0.02 0.32 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.19 2.86 8.06 -2.92 -0.02 2.84 16 37 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.12 2.50 4.22 -10.47 -0.04 2.46 16 39 H 0.10 1.96 6.36 -2.38 -0.02 1.94 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.95 6.40 -2.38 -0.02 1.94 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.36 15.93 5.44 -92.71 -0.50 15.42 16 46 H 0.26 15.93 8.31 -92.72 -0.77 15.15 16 47 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 2.39 7.40 -2.39 -0.02 2.37 16 49 H 0.08 2.39 7.00 -2.39 -0.02 2.38 16 50 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -74.80 394.44 5.19 -69.60 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.34 Total: 25.96 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 6.14 Total: -1.84 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -3.93 Total: -124.92 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.74 Total: -16.60 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -74.80 5.19 -69.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493837902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.974 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds