Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 C 1.47199 * 109.46590 * 119.99990 * 2 1 3 5 5 C 2.64598 * 109.46720 * 120.00187 * 2 1 3 6 6 C 4.07798 * 109.46859 * 120.00122 * 2 1 3 7 7 O 1.21617 * 120.00057 * 119.77942 * 6 5 4 8 8 N 1.34771 * 120.00239 * 299.77732 * 6 5 4 9 9 C 1.46924 * 120.63299 * 359.97438 * 8 6 5 10 10 C 1.53189 * 108.78103 * 233.63152 * 9 8 6 11 11 C 1.53039 * 109.31140 * 305.36723 * 10 9 8 12 12 H 1.08993 * 109.46115 * 301.35344 * 11 10 9 13 13 N 1.46904 * 109.45613 * 181.38305 * 11 10 9 14 14 C 1.46899 * 111.00029 * 85.00080 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99577 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47514 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46914 * 120.00413 * 22 20 18 25 25 H 1.48498 * 109.47071 * 239.99704 * 22 20 18 26 26 C 1.53038 * 109.53918 * 61.36585 * 11 10 9 27 27 H 1.09005 * 109.49694 * 178.68667 * 26 11 10 28 28 C 1.52992 * 109.50028 * 58.58324 * 26 11 10 29 29 C 1.46927 * 120.63144 * 180.02562 * 8 6 5 30 30 H 1.09007 * 109.47088 * 59.99633 * 1 2 3 31 31 H 1.08998 * 109.47580 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46886 * 300.00200 * 1 2 3 33 33 H 1.09002 * 109.46886 * 239.99800 * 2 1 3 34 34 H 1.08999 * 109.47054 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47344 * 299.99706 * 3 2 1 36 36 H 1.09002 * 109.47359 * 60.00089 * 3 2 1 37 37 H 1.08998 * 109.58656 * 113.84237 * 9 8 6 38 38 H 1.09003 * 109.58496 * 353.42096 * 9 8 6 39 39 H 1.09000 * 109.49908 * 185.40934 * 10 9 8 40 40 H 1.09007 * 109.49544 * 65.31334 * 10 9 8 41 41 H 1.00908 * 110.99583 * 208.94993 * 13 11 10 42 42 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 43 43 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 44 44 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 45 45 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.47357 * 60.00217 * 28 26 11 47 47 H 1.09006 * 109.47319 * 180.02562 * 28 26 11 48 48 H 1.09003 * 109.47497 * 299.99840 * 28 26 11 49 49 H 1.09003 * 109.58357 * 246.15470 * 29 8 6 50 50 H 1.09000 * 109.58738 * 6.57990 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4118 -1.2474 2.1604 6 6 2.8892 -1.9225 3.3297 7 8 3.9499 -2.5166 3.2984 8 7 2.1630 -1.8995 4.4648 9 6 0.8800 -1.1856 4.5183 10 6 0.9101 -0.2047 5.6947 11 6 1.2616 -0.9628 6.9768 12 1 0.5243 -1.7469 7.1488 13 7 1.2588 -0.0310 8.1125 14 6 -0.0962 0.1330 8.6557 15 6 -0.0591 1.0931 9.8168 16 8 0.9926 1.5913 10.1584 17 7 -1.1945 1.3973 10.4762 18 6 -1.1609 2.2710 11.5320 19 1 -0.2246 2.7153 11.8357 20 6 -2.3317 2.5850 12.2114 21 7 -3.4709 2.0441 11.8422 22 14 -2.2857 3.7751 13.6506 23 1 -0.8918 4.2405 13.8639 24 1 -3.1570 4.9412 13.3566 25 1 -2.7722 3.0901 14.8751 26 6 2.6500 -1.5907 6.8359 27 1 2.9095 -2.1108 7.7581 28 6 3.6807 -0.4943 6.5598 29 6 2.6398 -2.5869 5.6726 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.0695 -1.9007 4.6595 38 1 0.7281 -0.6369 3.5888 39 1 -0.0689 0.2618 5.8045 40 1 1.6608 0.5634 5.5087 41 1 1.9017 -0.3328 8.8294 42 1 -0.7535 0.5256 7.8799 43 1 -0.4709 -0.8327 8.9951 44 1 -2.0356 0.9985 10.2031 45 1 -4.2881 2.2630 12.3168 46 1 3.6858 0.2162 7.3865 47 1 4.6695 -0.9420 6.4590 48 1 3.4214 0.0242 5.6367 49 1 1.9732 -3.4165 5.9081 50 1 3.6491 -2.9627 5.5047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496341932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = -29.315602 kcal Electronic energy + Delta-G solvation = -28640.475488 eV Core-core repulsion = 24668.583629 eV Total energy + Delta-G solvation = -3971.891859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65573 -38.65686 -37.86311 -36.80337 -35.16753 -33.92199 -33.08924 -31.92560 -31.30096 -31.01538 -27.67775 -27.28021 -27.07586 -25.00211 -24.00990 -23.58349 -22.52629 -21.41310 -19.41092 -19.02919 -18.22811 -17.87898 -16.84133 -16.32393 -15.96220 -15.76215 -15.33022 -15.12548 -15.07414 -14.55502 -14.42596 -14.35372 -13.91736 -13.85643 -13.84775 -13.46451 -13.12224 -12.75082 -12.72162 -12.48299 -12.33431 -12.02816 -11.98355 -11.88239 -11.83034 -11.72360 -11.58149 -11.37010 -11.26552 -11.07007 -10.78906 -10.64626 -10.61520 -10.42764 -10.35632 -10.23730 -10.22733 -9.53544 -8.94462 -8.46506 -8.08570 -7.97449 -6.43459 -3.84162 1.30389 1.98268 2.70015 3.15051 3.25765 3.26856 3.33112 3.64855 3.89215 4.04748 4.26601 4.45792 4.47588 4.52650 4.61583 4.66843 4.80937 4.93037 4.97445 5.03216 5.13559 5.14136 5.22717 5.26681 5.31946 5.35148 5.37129 5.43096 5.48289 5.54611 5.57484 5.65601 5.71528 5.73780 5.75428 5.84640 5.93598 5.97771 6.03169 6.20320 6.25486 6.28220 6.45309 6.93122 7.03262 7.21865 7.53957 7.64229 7.80876 8.05109 8.59665 9.16576 9.52821 10.04223 10.74373 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.002135 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.822569 B =13109.090084 C =14246.967882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.077 4.077 5 C -0.219 4.219 6 C 0.635 3.365 7 O -0.529 6.529 8 N -0.595 5.595 9 C 0.108 3.892 10 C -0.126 4.126 11 C 0.093 3.907 12 H 0.044 0.956 13 N -0.661 5.661 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.107 4.107 27 H 0.085 0.915 28 C -0.140 4.140 29 C 0.120 3.880 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.351 0.649 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -8.103 -22.420 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.079 4.079 5 C -0.222 4.222 6 C 0.423 3.577 7 O -0.407 6.407 8 N -0.328 5.328 9 C -0.015 4.015 10 C -0.165 4.165 11 C -0.018 4.018 12 H 0.062 0.938 13 N -0.294 5.294 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.127 4.127 27 H 0.103 0.897 28 C -0.197 4.197 29 C -0.003 4.003 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.171 0.829 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.114 -7.497 -22.458 24.454 hybrid contribution -0.938 -0.491 1.071 1.505 sum 5.177 -7.988 -21.388 23.410 Atomic orbital electron populations 1.21860 0.92653 1.02802 1.03112 1.18520 0.96329 0.95323 0.90825 1.21847 1.01815 0.93686 1.03082 1.22641 0.96464 0.93774 0.95031 1.20609 1.02245 1.02595 0.96734 1.14740 0.83229 0.79277 0.80428 1.90840 1.21982 1.44005 1.83835 1.47893 1.21698 1.52538 1.10643 1.21850 0.84447 0.95110 1.00137 1.21994 1.03421 0.98152 0.92934 1.21486 0.95513 0.92762 0.92018 0.93782 1.60098 1.07803 1.50267 1.11249 1.21725 0.91240 0.98115 0.97115 1.19819 0.85045 0.86593 0.85904 1.90526 1.30458 1.56563 1.69111 1.41876 1.08242 1.40932 1.29090 1.19749 0.95874 1.20284 1.06846 0.87883 1.25263 0.94727 0.98590 0.99419 1.69618 0.98830 1.44126 1.41790 0.85807 0.78576 0.79632 0.80381 1.19216 1.20740 1.20775 1.21677 0.95957 0.96915 0.98121 0.89726 1.21763 0.96996 0.98279 1.02694 1.21735 1.01784 0.94014 0.82724 0.91099 0.92006 0.91740 0.88236 0.91944 0.91070 0.91744 0.90926 0.89649 0.90322 0.90078 0.82871 0.89723 0.93940 0.77497 0.91936 0.90940 0.93258 0.92668 0.91019 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.15 37.16 0.34 -0.35 16 2 C 0.01 0.05 3.30 -93.41 -0.31 -0.26 16 3 C -0.15 -0.78 9.15 37.15 0.34 -0.44 16 4 C -0.08 -0.71 12.50 -37.12 -0.46 -1.17 16 5 C -0.22 -2.51 11.57 -38.84 -0.45 -2.96 16 6 C 0.63 8.20 7.55 -14.34 -0.11 8.09 16 7 O -0.53 -8.47 16.50 5.26 0.09 -8.38 16 8 N -0.60 -6.37 2.41 -175.67 -0.42 -6.79 16 9 C 0.11 0.97 6.33 -3.71 -0.02 0.95 16 10 C -0.13 -1.34 5.25 -26.61 -0.14 -1.48 16 11 C 0.09 1.06 2.15 -67.67 -0.15 0.91 16 12 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 13 N -0.66 -10.01 5.25 -107.95 -0.57 -10.58 16 14 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 15 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 16 O -0.58 -15.60 15.78 5.55 0.09 -15.52 16 17 N -0.56 -14.11 5.29 -10.97 -0.06 -14.17 16 18 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 22 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.11 -1.12 2.58 -90.52 -0.23 -1.36 16 27 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 28 C -0.14 -1.66 8.56 37.15 0.32 -1.34 16 29 C 0.12 1.20 5.82 -3.73 -0.02 1.17 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.72 6.32 -51.93 -0.33 0.39 16 39 H 0.08 0.83 7.43 -51.93 -0.39 0.45 16 40 H 0.08 0.98 6.34 -51.92 -0.33 0.66 16 41 H 0.35 5.58 7.95 -39.29 -0.31 5.27 16 42 H 0.08 1.31 7.41 -51.93 -0.39 0.92 16 43 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 46 H 0.07 0.96 7.58 -51.93 -0.39 0.57 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -33.09 406.75 -8.41 -41.50 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.11 Total: 10.74 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.25 Total: 4.77 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.32 Total: -55.15 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.09 -8.41 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496341932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.185 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds