Wall clock time and date at job start Tue Mar 31 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 C 1.47199 * 109.46590 * 119.99990 * 2 1 3 5 5 C 2.64598 * 109.46720 * 120.00187 * 2 1 3 6 6 C 4.07798 * 109.46859 * 120.00122 * 2 1 3 7 7 O 1.21617 * 120.00057 * 119.77942 * 6 5 4 8 8 N 1.34771 * 120.00239 * 299.77732 * 6 5 4 9 9 C 1.46924 * 120.63299 * 359.97438 * 8 6 5 10 10 C 1.53189 * 108.78103 * 233.63152 * 9 8 6 11 11 C 1.53039 * 109.31140 * 305.36723 * 10 9 8 12 12 H 1.08993 * 109.46115 * 301.35344 * 11 10 9 13 13 N 1.46904 * 109.45613 * 181.38305 * 11 10 9 14 14 C 1.46899 * 111.00029 * 85.00080 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99577 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47514 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46914 * 120.00413 * 22 20 18 25 25 H 1.48498 * 109.47071 * 239.99704 * 22 20 18 26 26 C 1.53038 * 109.53918 * 61.36585 * 11 10 9 27 27 H 1.09005 * 109.49694 * 178.68667 * 26 11 10 28 28 C 1.52992 * 109.50028 * 58.58324 * 26 11 10 29 29 C 1.46927 * 120.63144 * 180.02562 * 8 6 5 30 30 H 1.09007 * 109.47088 * 59.99633 * 1 2 3 31 31 H 1.08998 * 109.47580 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46886 * 300.00200 * 1 2 3 33 33 H 1.09002 * 109.46886 * 239.99800 * 2 1 3 34 34 H 1.08999 * 109.47054 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47344 * 299.99706 * 3 2 1 36 36 H 1.09002 * 109.47359 * 60.00089 * 3 2 1 37 37 H 1.08998 * 109.58656 * 113.84237 * 9 8 6 38 38 H 1.09003 * 109.58496 * 353.42096 * 9 8 6 39 39 H 1.09000 * 109.49908 * 185.40934 * 10 9 8 40 40 H 1.09007 * 109.49544 * 65.31334 * 10 9 8 41 41 H 1.00908 * 110.99583 * 208.94993 * 13 11 10 42 42 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 43 43 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 44 44 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 45 45 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.47357 * 60.00217 * 28 26 11 47 47 H 1.09006 * 109.47319 * 180.02562 * 28 26 11 48 48 H 1.09003 * 109.47497 * 299.99840 * 28 26 11 49 49 H 1.09003 * 109.58357 * 246.15470 * 29 8 6 50 50 H 1.09000 * 109.58738 * 6.57990 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4118 -1.2474 2.1604 6 6 2.8892 -1.9225 3.3297 7 8 3.9499 -2.5166 3.2984 8 7 2.1630 -1.8995 4.4648 9 6 0.8800 -1.1856 4.5183 10 6 0.9101 -0.2047 5.6947 11 6 1.2616 -0.9628 6.9768 12 1 0.5243 -1.7469 7.1488 13 7 1.2588 -0.0310 8.1125 14 6 -0.0962 0.1330 8.6557 15 6 -0.0591 1.0931 9.8168 16 8 0.9926 1.5913 10.1584 17 7 -1.1945 1.3973 10.4762 18 6 -1.1609 2.2710 11.5320 19 1 -0.2246 2.7153 11.8357 20 6 -2.3317 2.5850 12.2114 21 7 -3.4709 2.0441 11.8422 22 14 -2.2857 3.7751 13.6506 23 1 -0.8918 4.2405 13.8639 24 1 -3.1570 4.9412 13.3566 25 1 -2.7722 3.0901 14.8751 26 6 2.6500 -1.5907 6.8359 27 1 2.9095 -2.1108 7.7581 28 6 3.6807 -0.4943 6.5598 29 6 2.6398 -2.5869 5.6726 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.0695 -1.9007 4.6595 38 1 0.7281 -0.6369 3.5888 39 1 -0.0689 0.2618 5.8045 40 1 1.6608 0.5634 5.5087 41 1 1.9017 -0.3328 8.8294 42 1 -0.7535 0.5256 7.8799 43 1 -0.4709 -0.8327 8.9951 44 1 -2.0356 0.9985 10.2031 45 1 -4.2881 2.2630 12.3168 46 1 3.6858 0.2162 7.3865 47 1 4.6695 -0.9420 6.4590 48 1 3.4214 0.0242 5.6367 49 1 1.9732 -3.4165 5.9081 50 1 3.6491 -2.9627 5.5047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496341932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:32 Heat of formation + Delta-G solvation = -50.954625 kcal Electronic energy + Delta-G solvation = -28641.413827 eV Core-core repulsion = 24668.583629 eV Total energy + Delta-G solvation = -3972.830198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57292 -40.18606 -39.18169 -37.34951 -36.37993 -35.78646 -34.06750 -33.24437 -32.67798 -32.07580 -28.53818 -28.18603 -28.05285 -26.48204 -25.21482 -24.38598 -23.44178 -22.16889 -21.08780 -20.05673 -19.84648 -19.10285 -17.94050 -17.45018 -16.96110 -16.74988 -16.67852 -16.36516 -16.18523 -15.64411 -15.57605 -15.36490 -15.34498 -15.14438 -14.63636 -14.38102 -14.26486 -13.89755 -13.71062 -13.49841 -13.30551 -13.09556 -12.99799 -12.90472 -12.80970 -12.72068 -12.48223 -12.39174 -12.38174 -12.31993 -12.18347 -12.11774 -11.72355 -11.51028 -11.44470 -11.35519 -11.33853 -11.04366 -10.32001 -10.00335 -9.81722 -9.28392 -8.46389 -5.94580 0.44997 1.20835 1.36598 1.42117 1.55935 1.88290 2.07088 2.29248 2.40805 2.89019 2.95741 3.21315 3.47986 3.64210 3.72096 3.94050 4.03200 4.07466 4.10922 4.17666 4.22438 4.30961 4.40515 4.45086 4.48867 4.53590 4.60295 4.65436 4.69653 4.74989 4.77492 4.79950 4.92032 4.93120 4.96378 5.04699 5.09579 5.12945 5.28028 5.32981 5.36133 5.37961 5.41990 5.49109 5.92428 6.13681 6.15792 6.18486 6.42835 6.61458 6.88694 7.13996 7.58011 8.13655 8.71200 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.002135 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.822569 B =13109.090084 C =14246.967882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.004 3.996 3 C -0.146 4.146 4 C -0.046 4.046 5 C -0.268 4.268 6 C 0.631 3.369 7 O -0.573 6.573 8 N -0.590 5.590 9 C 0.112 3.888 10 C -0.122 4.122 11 C 0.095 3.905 12 H 0.065 0.935 13 N -0.675 5.675 14 C 0.067 3.933 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.100 4.100 27 H 0.096 0.904 28 C -0.134 4.134 29 C 0.121 3.879 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.345 0.655 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.044 0.956 49 H 0.096 0.904 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -8.521 -23.697 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 C -0.203 4.203 4 C -0.049 4.049 5 C -0.271 4.271 6 C 0.421 3.579 7 O -0.454 6.454 8 N -0.321 5.321 9 C -0.010 4.010 10 C -0.161 4.161 11 C -0.014 4.014 12 H 0.083 0.917 13 N -0.308 5.308 14 C -0.065 4.065 15 C 0.226 3.774 16 O -0.511 6.511 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.120 4.120 27 H 0.114 0.886 28 C -0.191 4.191 29 C -0.001 4.001 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.165 0.835 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.320 -7.925 -23.746 25.404 hybrid contribution -0.376 -0.325 1.389 1.475 sum 3.944 -8.251 -22.357 24.155 Atomic orbital electron populations 1.21865 0.91361 1.03058 1.03886 1.18841 0.97309 0.95416 0.89801 1.21862 1.01353 0.93302 1.03823 1.23437 0.94619 0.92120 0.94699 1.20593 1.04379 1.04487 0.97660 1.14976 0.82777 0.78861 0.81299 1.90801 1.23800 1.46125 1.84689 1.47981 1.21905 1.51977 1.10250 1.21930 0.84137 0.95229 0.99692 1.21943 1.02989 0.98017 0.93146 1.21567 0.96452 0.92656 0.90742 0.91747 1.60096 1.06741 1.52135 1.11811 1.21580 0.92714 0.97349 0.94899 1.20947 0.83717 0.86300 0.86484 1.90497 1.31873 1.58174 1.70525 1.41940 1.09082 1.41054 1.29079 1.19670 0.95443 1.22154 1.08855 0.90503 1.26008 0.94101 0.99749 1.01413 1.69668 0.99214 1.44616 1.42586 0.84901 0.78200 0.77852 0.77570 1.19943 1.19610 1.19598 1.21632 0.94977 0.96456 0.98908 0.88580 1.21679 0.97736 0.98391 1.01334 1.21781 1.01950 0.94337 0.82056 0.89118 0.92019 0.92230 0.86375 0.92730 0.88817 0.92552 0.88547 0.89054 0.89770 0.92079 0.83547 0.87748 0.91422 0.76931 0.91319 0.92698 0.93204 0.93733 0.88555 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.15 71.98 0.66 -0.33 16 2 C 0.00 0.04 3.30 -12.60 -0.04 0.00 16 3 C -0.15 -1.27 9.15 71.98 0.66 -0.62 16 4 C -0.05 -0.81 12.50 31.13 0.39 -0.42 16 5 C -0.27 -6.11 11.57 30.02 0.35 -5.76 16 6 C 0.63 16.48 7.55 85.49 0.65 17.13 16 7 O -0.57 -19.00 16.50 -4.08 -0.07 -19.07 16 8 N -0.59 -12.12 2.41 -827.94 -1.99 -14.11 16 9 C 0.11 1.81 6.33 86.36 0.55 2.36 16 10 C -0.12 -2.40 5.25 30.67 0.16 -2.24 16 11 C 0.10 1.99 2.15 44.94 0.10 2.09 16 12 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 13 N -0.68 -19.71 5.25 -495.44 -2.60 -22.31 16 14 C 0.07 2.13 5.96 85.56 0.51 2.64 16 15 C 0.44 20.29 7.82 87.66 0.69 20.97 16 16 O -0.62 -34.21 15.78 -3.05 -0.05 -34.26 16 17 N -0.57 -28.89 5.29 -306.99 -1.62 -30.52 16 18 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 22 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 C -0.10 -1.99 2.58 -10.73 -0.03 -2.02 16 27 H 0.10 1.73 8.10 -2.38 -0.02 1.71 16 28 C -0.13 -3.24 8.56 71.98 0.62 -2.62 16 29 C 0.12 2.26 5.82 86.35 0.50 2.77 16 30 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.40 6.32 -2.39 -0.02 1.38 16 39 H 0.08 1.58 7.43 -2.39 -0.02 1.57 16 40 H 0.06 1.46 6.34 -2.38 -0.02 1.45 16 41 H 0.34 10.81 7.95 -89.69 -0.71 10.10 16 42 H 0.10 2.96 7.41 -2.39 -0.02 2.94 16 43 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 44 H 0.40 18.82 7.90 -92.70 -0.73 18.09 16 45 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 46 H 0.05 1.51 7.58 -2.39 -0.02 1.49 16 47 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.04 1.15 5.97 -2.39 -0.01 1.14 16 49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.09 1.88 7.00 -2.39 -0.02 1.86 16 Total: -1.00 -73.73 406.75 2.52 -71.20 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.48 Total: 37.20 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 7.03 Total: 15.85 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -5.94 Total: -115.63 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.12 Total: -53.33 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.73 2.52 -71.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496341932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds