Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.47203 * 109.47255 * 240.00227 * 2 1 3 5 5 C 2.64604 * 109.47002 * 240.00205 * 2 1 3 6 6 C 4.07798 * 109.47130 * 240.00192 * 2 1 3 7 7 O 1.21616 * 120.00366 * 59.14883 * 6 5 4 8 8 N 1.34779 * 119.99938 * 239.14337 * 6 5 4 9 9 C 1.46934 * 120.62983 * 0.02562 * 8 6 5 10 10 C 1.53190 * 108.77486 * 126.36663 * 9 8 6 11 11 C 1.53037 * 109.31458 * 54.63233 * 10 9 8 12 12 H 1.09000 * 109.46002 * 58.65690 * 11 10 9 13 13 N 1.46901 * 109.46350 * 178.62509 * 11 10 9 14 14 C 1.46896 * 111.00249 * 275.00384 * 13 11 10 15 15 C 1.50697 * 109.47214 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99777 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00190 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00070 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00435 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99844 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47070 * 60.00287 * 22 20 18 24 24 H 1.48502 * 109.47016 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47202 * 300.00076 * 22 20 18 26 26 C 1.53038 * 109.53941 * 298.63879 * 11 10 9 27 27 H 1.09009 * 109.49855 * 181.35058 * 26 11 10 28 28 C 1.53003 * 109.49493 * 301.40895 * 26 11 10 29 29 C 1.46921 * 120.63372 * 179.72226 * 8 6 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08995 * 109.58571 * 246.15022 * 9 8 6 38 38 H 1.09000 * 109.58262 * 6.43477 * 9 8 6 39 39 H 1.08996 * 109.49759 * 174.58936 * 10 9 8 40 40 H 1.09003 * 109.49676 * 294.68346 * 10 9 8 41 41 H 1.00895 * 111.00262 * 151.04684 * 13 11 10 42 42 H 1.08994 * 109.47447 * 299.99700 * 14 13 11 43 43 H 1.09006 * 109.47025 * 59.99804 * 14 13 11 44 44 H 0.97003 * 119.99920 * 359.97438 * 17 15 14 45 45 H 0.97002 * 119.99572 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.47060 * 60.00265 * 28 26 11 47 47 H 1.09000 * 109.46938 * 180.02562 * 28 26 11 48 48 H 1.09003 * 109.47108 * 300.00232 * 28 26 11 49 49 H 1.09007 * 109.58540 * 353.42369 * 29 8 6 50 50 H 1.08997 * 109.59097 * 113.84185 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 6 2.4120 -1.2473 -2.1605 6 6 2.8893 -1.9223 -3.3297 7 8 2.2248 -1.9180 -4.3483 8 7 4.0752 -2.5622 -3.3014 9 6 4.8891 -2.5765 -2.0782 10 6 5.2233 -4.0293 -1.7254 11 6 5.8859 -4.7030 -2.9292 12 1 6.7888 -4.1558 -3.2001 13 7 6.2376 -6.0868 -2.5834 14 6 7.5426 -6.1461 -1.9116 15 6 7.8684 -7.5778 -1.5726 16 8 7.0902 -8.4619 -1.8626 17 7 9.0244 -7.8760 -0.9471 18 6 9.3210 -9.1786 -0.6392 19 1 8.6282 -9.9658 -0.8974 20 6 10.5131 -9.4860 0.0051 21 7 11.3564 -8.5282 0.3188 22 14 10.9170 -11.2608 0.4254 23 1 10.9650 -12.0661 -0.8214 24 1 12.2365 -11.3209 1.1040 25 1 9.8708 -11.8063 1.3270 26 6 4.9160 -4.7043 -4.1130 27 1 5.3796 -5.2056 -4.9627 28 6 3.6341 -5.4424 -3.7220 29 6 4.5755 -3.2643 -4.4911 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 5.8111 -2.0200 -2.2463 38 1 4.3299 -2.1193 -1.2619 39 1 5.9058 -4.0496 -0.8758 40 1 4.3071 -4.5615 -1.4693 41 1 6.2245 -6.6782 -3.4007 42 1 8.3104 -5.7453 -2.5732 43 1 7.5072 -5.5553 -0.9962 44 1 9.6469 -7.1690 -0.7156 45 1 12.1888 -8.7430 0.7683 46 1 3.1702 -4.9402 -2.8732 47 1 2.9438 -5.4435 -4.5656 48 1 3.8752 -6.4698 -3.4490 49 1 3.8085 -3.2631 -5.2657 50 1 5.4713 -2.7651 -4.8603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496341933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = -29.178487 kcal Electronic energy + Delta-G solvation = -28485.101085 eV Core-core repulsion = 24513.215172 eV Total energy + Delta-G solvation = -3971.885914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66312 -38.65721 -37.86392 -36.80209 -35.16746 -33.91911 -33.11297 -31.92695 -31.29920 -31.01333 -27.69290 -27.27296 -27.07541 -25.00636 -24.01665 -23.57193 -22.53756 -21.43303 -19.40237 -19.00029 -18.19783 -17.87490 -16.96151 -16.28375 -15.95046 -15.75227 -15.31181 -15.15642 -15.04655 -14.55782 -14.42758 -14.35841 -13.92550 -13.86309 -13.84930 -13.45782 -13.12318 -12.75541 -12.74155 -12.48642 -12.32977 -12.03171 -11.99125 -11.89725 -11.83937 -11.71503 -11.57460 -11.36573 -11.25702 -11.03079 -10.78799 -10.64928 -10.61344 -10.45598 -10.42174 -10.23074 -10.22102 -9.51140 -8.94480 -8.46079 -8.08197 -7.97130 -6.42950 -3.83739 1.30275 1.98856 2.68363 3.19218 3.24892 3.26657 3.29417 3.65994 3.89655 4.05173 4.26863 4.44648 4.48302 4.52879 4.60452 4.65753 4.81374 4.93194 4.97505 5.03711 5.12182 5.13831 5.23066 5.26273 5.29872 5.34085 5.37318 5.43441 5.47665 5.54694 5.57701 5.65554 5.69559 5.72175 5.75744 5.84824 5.93961 5.97883 6.03296 6.20596 6.25692 6.28539 6.45474 6.93085 7.03244 7.22183 7.53872 7.64621 7.80857 8.05033 8.60100 9.16718 9.53110 10.04677 10.74693 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.002010 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.676087 B =13923.886097 C =14888.123415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.219 4.219 6 C 0.635 3.365 7 O -0.528 6.528 8 N -0.595 5.595 9 C 0.108 3.892 10 C -0.126 4.126 11 C 0.093 3.907 12 H 0.044 0.956 13 N -0.661 5.661 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.108 4.108 27 H 0.085 0.915 28 C -0.140 4.140 29 C 0.120 3.880 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.351 0.649 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.098 0.902 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 20.538 -2.023 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 C -0.203 4.203 4 C -0.079 4.079 5 C -0.222 4.222 6 C 0.423 3.577 7 O -0.406 6.406 8 N -0.328 5.328 9 C -0.015 4.015 10 C -0.165 4.165 11 C -0.018 4.018 12 H 0.062 0.938 13 N -0.294 5.294 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.127 4.127 27 H 0.103 0.897 28 C -0.198 4.198 29 C -0.002 4.002 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.171 0.829 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.116 0.884 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.290 19.901 -2.101 25.184 hybrid contribution 1.471 -0.295 -0.214 1.516 sum -13.819 19.606 -2.315 24.098 Atomic orbital electron populations 1.21856 0.92797 1.02951 1.02859 1.18531 0.96380 0.95279 0.90851 1.21840 1.01765 0.93795 1.02915 1.22641 0.96825 0.94014 0.94441 1.20606 1.02910 1.02803 0.95838 1.14738 0.80591 0.77943 0.84394 1.90840 1.56553 1.61243 1.32009 1.47896 1.19081 1.51836 1.13962 1.21849 0.95352 0.98105 0.86236 1.21991 1.02491 0.93531 0.98500 1.21483 0.96231 0.90217 0.93832 0.93778 1.60085 1.29868 1.07194 1.32272 1.21720 0.89951 0.97019 0.99485 1.19816 0.83593 0.89631 0.84367 1.90526 1.49527 1.48673 1.57974 1.41860 1.17347 1.09322 1.51530 1.19651 1.03602 0.84560 1.35103 0.87990 1.25263 0.95743 0.99790 0.97164 1.69603 1.10759 1.32541 1.41455 0.85916 0.77503 0.81979 0.78809 1.19930 1.20985 1.19878 1.21608 0.97600 0.95378 0.98128 0.89687 1.21771 0.95648 1.01365 1.00978 1.21637 1.00060 0.91312 0.87219 0.91897 0.91143 0.91948 0.87936 0.92000 0.91066 0.91905 0.90926 0.89652 0.90306 0.90073 0.82869 0.93944 0.89734 0.77492 0.91831 0.92665 0.93256 0.90949 0.88403 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.15 37.16 0.34 -0.43 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.26 16 3 C -0.15 -0.69 9.15 37.16 0.34 -0.35 16 4 C -0.08 -0.71 12.50 -37.12 -0.46 -1.18 16 5 C -0.22 -2.51 11.57 -38.84 -0.45 -2.95 16 6 C 0.63 8.20 7.55 -14.34 -0.11 8.09 16 7 O -0.53 -8.46 16.50 5.26 0.09 -8.37 16 8 N -0.60 -6.38 2.42 -175.93 -0.43 -6.81 16 9 C 0.11 0.97 6.33 -3.71 -0.02 0.95 16 10 C -0.13 -1.35 5.25 -26.61 -0.14 -1.49 16 11 C 0.09 1.06 2.15 -67.67 -0.15 0.92 16 12 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 13 N -0.66 -10.03 5.25 -107.95 -0.57 -10.59 16 14 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 15 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 16 O -0.58 -15.63 15.78 5.54 0.09 -15.54 16 17 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 22 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.11 -1.13 2.58 -90.74 -0.23 -1.36 16 27 H 0.08 0.83 8.10 -51.92 -0.42 0.41 16 28 C -0.14 -1.67 8.55 37.16 0.32 -1.35 16 29 C 0.12 1.20 5.78 -3.96 -0.02 1.18 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.72 6.31 -51.93 -0.33 0.39 16 39 H 0.08 0.84 7.43 -51.93 -0.39 0.45 16 40 H 0.08 0.99 6.34 -51.93 -0.33 0.66 16 41 H 0.35 5.59 7.95 -39.29 -0.31 5.27 16 42 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 43 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.05 0.70 5.97 -51.93 -0.31 0.39 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.96 7.58 -51.93 -0.39 0.57 16 49 H 0.10 1.07 7.00 -51.92 -0.36 0.71 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -33.07 406.71 -8.41 -41.49 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.11 Total: 10.80 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.25 Total: 4.74 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.33 Total: -55.18 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.07 -8.41 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496341933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.308 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds